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Helena F. Deus
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2010 – 2019
- 2019
- [r1]Helena F. Deus:
Big Semantic Data Processing in the Life Sciences Domain. Encyclopedia of Big Data Technologies 2019 - 2018
- [c11]Michael Lauruhn, Paul Groth, Corey A. Harper, Helena F. Deus:
Use of Internal Testing Data to Help Determine Compensation for Crowdsourcing Tasks. HumL@ISWC 2018: 27-37 - 2017
- [c10]Helena F. Deus
, Corey A. Harper, Darin McBeath, Ron Daniel Jr.:
Combining pattern matching with word embeddings for the extraction of experimental variables from scientific literature. IEEE BigData 2017: 4287-4292 - 2014
- [j14]Muhammad Saleem, Shanmukha S. Padmanabhuni
, Axel-Cyrille Ngonga Ngomo
, Aftab Iqbal, Jonas S. Almeida, Stefan Decker
, Helena F. Deus
:
TopFed: TCGA Tailored Federated Query Processing and Linking to LOD. J. Biomed. Semant. 5: 47 (2014) - [j13]Maulik R. Kamdar
, Dimitris Zeginis, Ali Hasnain
, Stefan Decker
, Helena F. Deus
:
ReVeaLD: A user-driven domain-specific interactive search platform for biomedical research. J. Biomed. Informatics 47: 112-130 (2014) - [j12]Dimitris Zeginis, Ali Hasnain
, Nikolaos Loutas, Helena Futscher Deus
, Ronan Fox, Konstantinos A. Tarabanis
:
A collaborative methodology for developing a semantic model for interlinking Cancer Chemoprevention linked-data sources. Semantic Web 5(2): 127-142 (2014) - [j11]Muhammad Saleem, Maulik R. Kamdar
, Aftab Iqbal, Shanmukha S. Padmanabhuni
, Helena F. Deus
, Axel-Cyrille Ngonga Ngomo
:
Big linked cancer data: Integrating linked TCGA and PubMed. J. Web Semant. 27-28: 34-41 (2014) - [c9]Ali Hasnain
, Syeda Sana e Zainab
, Maulik R. Kamdar, Qaiser Mehmood, Claude N. Warren Jr., Qurratal Ain Fatimah, Helena F. Deus
, Muntazir Mehdi, Stefan Decker
:
A Roadmap for Navigating the Life Sciences Linked Open Data Cloud. JIST 2014: 97-112 - [c8]Ali Hasnain, Maulik R. Kamdar, Panagiotis Hasapis, Dimitris Zeginis, Claude N. Warren Jr., Helena F. Deus, Dimitrios Ntalaperas, Konstantinos A. Tarabanis, Muntazir Mehdi, Stefan Decker:
Linked Biomedical Dataspace: Lessons Learned Integrating Data for Drug Discovery. ISWC (1) 2014: 114-130 - 2013
- [j10]David E. Robbins, Alexander Grüneberg, Helena F. Deus
, Murat M. Tanik, Jonas S. Almeida:
A self-updating road map of The Cancer Genome Atlas. Bioinform. 29(10): 1333-1340 (2013) - [j9]Arlin Stoltzfus
, Hilmar Lapp
, Naim Matasci
, Helena F. Deus
, Brian Sidlauskas
, Christian M. Zmasek, Gaurav Vaidya
, Enrico Pontelli
, Karen Cranston, Rutger A. Vos
, Campbell O. Webb
, Luke J. Harmon, Meg Pirrung, Brian C. O'Meara
, Matthew W. Pennell, Siavash Mirarab
, Michael S. Rosenberg
, James P. Balhoff
, Holly M. Bik
, Tracy A. Heath
, Peter E. Midford, Joseph W. Brown
, Emily Jane McTavish
, Jeet Sukumaran, Mark Westneat, Michael E. Alfaro
, Aaron Steele, Greg Jordan:
Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient. BMC Bioinform. 14: 158 (2013) - [c7]David E. Robbins, Alexander Grüneberg, Helena F. Deus
, Murat M. Tanik, Jonas S. Almeida:
TCGA Toolbox: an Open Web App Framework for Distributing Big Data Analysis Pipelines for Cancer Genomics. BCB 2013: 62 - [c6]Laleh Kazemzadeh, Helena F. Deus, Michel Dumontier, Frank Barry:
Looking into Reactome through Biopax Lens. CSWS 2013: 37-40 - [c5]Muhammad Saleem, Shanmukha S. Padmanabhuni, Axel-Cyrille Ngonga Ngomo
, Jonas S. Almeida, Stefan Decker
, Helena F. Deus
:
Linked cancer genome atlas database. I-SEMANTICS 2013: 129-134 - [c4]Muhammad Saleem, Axel-Cyrille Ngonga Ngomo, Josiane Xavier Parreira, Helena F. Deus
, Manfred Hauswirth:
DAW: Duplicate-AWare Federated Query Processing over the Web of Data. ISWC (1) 2013: 574-590 - 2012
- [j8]Helena F. Deus
, Eric Prud'hommeaux, Michael Miller, Jun Zhao
, James Malone, Tomasz Adamusiak
, Jamie P. McCusker
, Sudeshna Das, Philippe Rocca-Serra, Ronan Fox, M. Scott Marshall:
Translating standards into practice - One Semantic Web API for Gene Expression. J. Biomed. Informatics 45(4): 782-794 (2012) - [j7]M. Scott Marshall, Richard D. Boyce, Helena F. Deus
, Jun Zhao, Egon L. Willighagen
, Matthias Samwald
, Elgar Pichler, Janos G. Hajagos
, Eric Prud'hommeaux, Susie Stephens:
Emerging practices for mapping and linking life sciences data using RDF - A case series. J. Web Semant. 14: 2-13 (2012) - [c3]Andrea Splendiani, Andra Waagmeester, Carina Haupt, Helena F. Deus:
SemScape: Visualizating Semantic Web Data Landscapes with Cytoscape 3.0. SWAT4LS 2012 - 2011
- [j6]Helena F. Deus
, Miria C. Correa, Romesh Stanislaus, Maria Miragaia
, Wolfgang Maass, Hermínia de Lencastre, Ronan Fox, Jonas S. Almeida:
S3QL: A distributed domain specific language for controlled semantic integration of life sciences data. BMC Bioinform. 12: 285 (2011) - [c2]Helena F. Deus
, Jun Zhao, Jamie P. McCusker
, Ronan Fox, Eric Prud'hommeaux, James Malone, Sudeshna Das, Michael Miller, Tomasz Adamusiak, Philippe Rocca-Serra, M. Scott Marshall:
Translating standards into practice: one semantic web API for gene expression. SWAT4LS 2011: 6-7 - 2010
- [j5]Jonas S. Almeida, Helena F. Deus
, Wolfgang Maass
:
S3DB core: a framework for RDF generation and management in bioinformatics infrastructures. BMC Bioinform. 11: 387 (2010) - [j4]Helena F. Deus
, Diogo F. Veiga
, Pablo R. Freire, John N. Weinstein
, Gordon B. Mills, Jonas S. Almeida:
Exposing the cancer genome atlas as a SPARQL endpoint. J. Biomed. Informatics 43(6): 998-1008 (2010) - [j3]Miria C. Correa, Helena F. Deus
, Ana Tereza Ribeiro de Vasconcelos
, Yuki Hayashi, Jaffer A. Ajani, Srikrishna V. Patnana
, Jonas S. Almeida:
AGUIA: autonomous graphical user interface assembly for clinical trials semantic data services. BMC Medical Informatics Decis. Mak. 10: 65 (2010) - [c1]Helena F. Deus, Jun Zhao, Satya S. Sahoo, Matthias Samwald, Eric Prud'hommeaux, Michael Miller, M. Scott Marshall, Kei-Hoi Cheung:
Provenance of Microarray Experiments for a Better Understanding of Experiment Results. SWPM@ISWC 2010
2000 – 2009
- 2009
- [j2]Diogo F. Veiga
, Helena F. Deus
, Caner Akdemir, Ana Tereza Ribeiro de Vasconcelos
, Jonas S. Almeida:
DASMiner: discovering and integrating data from DAS sources. BMC Syst. Biol. 3: 109 (2009) - 2008
- [j1]Romesh Stanislaus, Mark Carey, Helena F. Deus
, Kevin R. Coombes
, Bryan T. J. Hennessy
, Gordon B. Mills, Jonas S. Almeida:
RPPAML/RIMS: A metadata format and an information management system for reverse phase protein arrays. BMC Bioinform. 9 (2008)
Coauthor Index
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