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Books and Theses
- 2011
[b1]Vincent Gardeux:
Conception d'heuristiques d'optimisation pour les problèmes de grande dimension : application à l'analyse de données de puces à ADN. (Heuristics implementation for high-dimensional problem optimization : application in microarray data analysis). University of Paris-Est, France, 2011
Journal Articles
- 2020
- [j13]Fabrice P. A. David, Maria Litovchenko, Bart Deplancke, Vincent Gardeux
:
ASAP 2020 update: an open, scalable and interactive web-based portal for (single-cell) omics analyses. Nucleic Acids Res. 48(Webserver-Issue): W403-W414 (2020) - 2017
- [j12]Vincent Gardeux, Mahamed G. H. Omran, Rachid Chelouah, Patrick Siarry, Fred W. Glover:
Adaptive pattern search for large-scale optimization. Appl. Intell. 47(2): 319-330 (2017) - [j11]Vincent Gardeux, Fabrice P. A. David, Adrian Shajkofci, Petra C. Schwalie, Bart Deplancke:
ASAP: a web-based platform for the analysis and interactive visualization of single-cell RNA-seq data. Bioinform. 33(19): 3123-3125 (2017) - [j10]Vincent Gardeux, Joanne Berghout, Ikbel Achour, A. Grant Schissler, Qike Li, Colleen Kenost, Jianrong Li, Yuan Shang, Anthony Bosco, Donald Saner, Marilyn J. Halonen, Daniel Jackson, Haiquan Li, Fernando D. Martinez, Yves A. Lussier:
A genome-by-environment interaction classifier for precision medicine: personal transcriptome response to rhinovirus identifies children prone to asthma exacerbations. J. Am. Medical Informatics Assoc. 24(6): 1116-1126 (2017) - [j9]Qike Li, A. Grant Schissler, Vincent Gardeux, Joanne Berghout, Ikbel Achour, Colleen Kenost, Haiquan Li, Hao Helen Zhang, Yves A. Lussier:
kMEn: Analyzing noisy and bidirectional transcriptional pathway responses in single subjects. J. Biomed. Informatics 66: 32-41 (2017) - 2015
- [j8]A. Grant Schissler, Vincent Gardeux, Qike Li, Ikbel Achour, Haiquan Li, Walter W. Piegorsch, Yves A. Lussier:
Dynamic changes of RNA-sequencing expression for precision medicine: N-of-1-pathways Mahalanobis distance within pathways of single subjects predicts breast cancer survival. Bioinform. 31(12): 293-302 (2015) - [j7]Vincent Gardeux, Anthony Bosco, Jianrong Li, Marilyn J. Halonen, Daniel Jackson, Fernando D. Martinez, Yves A. Lussier:
Towards a PBMC "virogram assay" for precision medicine: Concordance between ex vivo and in vivo viral infection transcriptomes. J. Biomed. Informatics 55: 94-103 (2015) - [j6]Haiquan Li, Nima Pouladi, Ikbel Achour, Vincent Gardeux, Jianrong Li, Qike Li, Hao Helen Zhang, Fernando D. Martinez, Joe G. N. 'Skip' Garcia, Yves A. Lussier:
eQTL networks unveil enriched mRNA master integrators downstream of complex disease-associated SNPs. J. Biomed. Informatics 58: 226-234 (2015) - 2014
- [j5]Mark Maienschein-Cline, Zhengdeng Lei, Vincent Gardeux, Taimur Abbasi, Roberto F. Machado, Victor Gordeuk, Ankit A. Desai, Santosh Saraf, Neil Bahroos, Yves A. Lussier:
ARTS: automated randomization of multiple traits for study design. Bioinform. 30(11): 1637-1639 (2014) - [j4]Vincent Gardeux, Ikbel Achour, Jianrong Li, Mark Maienschein-Cline, Haiquan Li, Lorenzo L. Pesce, Gurunadh Parinandi, Neil Bahroos, Robert Winn, Ian T. Foster, Joe G. N. Garcia, Yves A. Lussier:
'N-of-1-pathways' unveils personal deregulated mechanisms from a single pair of RNA-Seq samples: towards precision medicine. J. Am. Medical Informatics Assoc. 21(6): 1015-1025 (2014) - 2013
- [j3]Andrew D. Boyd, Jianrong John Li, Mike D. Burton, Michael Jonen, Vincent Gardeux, Ikbel Achour, Roger Q. Luo, Ilir Zenku, Neil Bahroos, Stephen B. Brown, Terry L. Vanden Hoek, Yves A. Lussier:
Research and applications: The discriminatory cost of ICD-10-CM transition between clinical specialties: metrics, case study, and mitigating tools. J. Am. Medical Informatics Assoc. 20(4): 708-717 (2013) - 2012
- [j2]Stefan Bornhofen, Vincent Gardeux, Andréa Machizaud:
From Swarm Art Toward Ecosystem Art. Int. J. Swarm Intell. Res. 3(3): 1-18 (2012) - 2011
- [j1]Vincent Gardeux, Rachid Chelouah, Patrick Siarry, Fred W. Glover:
EM323: a line search based algorithm for solving high-dimensional continuous non-linear optimization problems. Soft Comput. 15(11): 2275-2285 (2011)
Conference and Workshop Papers
- 2014
- [c3]Young Ji Lee, Andrew D. Boyd, Jianrong Li, Vincent Gardeux, Colleen Kenost, Donald Saner, Haiquan Li, Ivo L. Abraham, Jerry A. Krishnan, Yves A. Lussier:
COPD Hospitalization Risk Increased with Distinct Patterns of Multiple Systems Comorbidities Unveiled by Network Modeling. AMIA 2014 - 2013
- [c2]Maria Fernanda B. Wanderley, Vincent Gardeux, René Natowicz, Antônio de Pádua Braga:
GA-KDE-Bayes: an evolutionary wrapper method based on non-parametric density estimation applied to bioinformatics problems. ESANN 2013 - 2009
- [c1]Vincent Gardeux, Rachid Chelouah, Patrick Siarry, Fred W. Glover:
Unidimensional Search for Solving Continuous High-Dimensional Optimization Problems. ISDA 2009: 1096-1101
Coauthor Index
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