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Martin C. Herbordt
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- affiliation: Boston University, Department of Electrical and Computer Engineering, MA, USA
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Journal Articles
- 2024
- [j29]Chunshu Wu
, Chen Yang
, Sahan Bandara
, Tong Geng
, Anqi Guo
, Pouya Haghi
, Ang Li
, Martin C. Herbordt
:
FPGA-Accelerated Range-Limited Molecular Dynamics. IEEE Trans. Computers 73(6): 1544-1558 (2024) - 2023
- [j28]Jing Li
, Martin C. Herbordt
:
Introduction to the Special Section on FCCM 2022. ACM Trans. Reconfigurable Technol. Syst. 16(4): 51:1-51:2 (2023) - 2022
- [j27]Pouya Haghi
, Anqi Guo, Qingqing Xiong
, Chen Yang, Tong Geng
, Justin T. Broaddus, Ryan J. Marshall, Derek Schafer, Anthony Skjellum, Martin C. Herbordt:
Reconfigurable switches for high performance and flexible MPI collectives. Concurr. Comput. Pract. Exp. 34(6) (2022) - [j26]Christophe Bobda
, Joel Mandebi Mbongue
, Paul Chow
, Mohammad Ewais, Naif Tarafdar
, Juan Camilo Vega
, Ken Eguro
, Dirk Koch
, Suranga Handagala, Miriam Leeser
, Martin C. Herbordt, Hafsah Shahzad, H. Peter Hofstee, Burkhard Ringlein
, Jakub Szefer
, Ahmed Sanaullah, Russell Tessier
:
The Future of FPGA Acceleration in Datacenters and the Cloud. ACM Trans. Reconfigurable Technol. Syst. 15(3): 34:1-34:42 (2022) - 2021
- [j25]Tong Geng
, Ang Li, Tianqi Wang, Chunshu Wu, Yanfei Li, Runbin Shi
, Wei Wu, Martin C. Herbordt
:
O3BNN-R: An Out-of-Order Architecture for High-Performance and Regularized BNN Inference. IEEE Trans. Parallel Distributed Syst. 32(1): 199-213 (2021) - 2020
- [j24]Tianqi Wang
, Tong Geng
, Ang Li
, Xi Jin
, Martin C. Herbordt
:
FPDeep: Scalable Acceleration of CNN Training on Deeply-Pipelined FPGA Clusters. IEEE Trans. Computers 69(8): 1143-1158 (2020) - 2018
- [j23]Ahmed Sanaullah, Chen Yang, Yuri Alexeev
, Kazutomo Yoshii, Martin C. Herbordt:
Real-time data analysis for medical diagnosis using FPGA-accelerated neural networks. BMC Bioinform. 19-S(18): 19-31 (2018) - 2016
- [j22]Jie Meng, Eduard Llamosí, Fulya Kaplan, Chulian Zhang, Jiayi Sheng, Martin C. Herbordt, Gunar Schirner
, Ayse K. Coskun:
Communication and cooling aware job allocation in data centers for communication-intensive workloads. J. Parallel Distributed Comput. 96: 181-193 (2016) - [j21]Jiayi Sheng, Qingqing Xiong, Chen Yang, Martin C. Herbordt:
Collective Communication on FPGA Clusters with Static Scheduling. SIGARCH Comput. Archit. News 44(4): 2-7 (2016) - 2015
- [j20]Atabak Mahram, Martin C. Herbordt:
NCBI BLASTP on High-Performance Reconfigurable Computing Systems. ACM Trans. Reconfigurable Technol. Syst. 7(4): 33:1-33:20 (2015) - 2013
- [j19]Atabak Mahram, Martin C. Herbordt:
NCBI BLASTP on the convey HC1-EX. SIGARCH Comput. Archit. News 41(5): 41-46 (2013) - 2011
- [j18]Md. Ashfaquzzaman Khan, Martin C. Herbordt:
Parallel discrete molecular dynamics simulation with speculation and in-order commitment. J. Comput. Phys. 230(17): 6563-6582 (2011) - 2010
- [j17]Bharat Sukhwani, Martin C. Herbordt:
FPGA acceleration of rigid-molecule docking codes. IET Comput. Digit. Tech. 4(3): 184-195 (2010) - [j16]Matt Chiu, Martin C. Herbordt:
Molecular Dynamics Simulations on High-Performance Reconfigurable Computing Systems. ACM Trans. Reconfigurable Technol. Syst. 3(4): 23:1-23:37 (2010) - 2009
- [j15]Tom Van Court, Martin C. Herbordt:
Elements of High-Performance Reconfigurable Computing. Adv. Comput. 75: 113-157 (2009) - 2008
- [j14]Martin C. Herbordt, Yongfeng Gu, Tom Van Court, Josh Model, Bharat Sukhwani, Matt Chiu:
Computing Models for FPGA-Based Accelerators. Comput. Sci. Eng. 10(6): 35-45 (2008) - [j13]Yongfeng Gu, Tom Van Court, Martin C. Herbordt:
Explicit design of FPGA-based coprocessors for short-range force computations in molecular dynamics simulations. Parallel Comput. 34(4-5): 261-277 (2008) - 2007
- [j12]Martin C. Herbordt, Tom Van Court, Yongfeng Gu, Bharat Sukhwani, Al Conti, Josh Model, Douglas DiSabello:
Achieving High Performance with FPGA-Based Computing. Computer 40(3): 50-57 (2007) - [j11]Tom Van Court, Martin C. Herbordt:
Families of FPGA-based accelerators for approximate string matching. Microprocess. Microsystems 31(2): 135-145 (2007) - [j10]Martin C. Herbordt, Josh Model, Bharat Sukhwani, Yongfeng Gu, Tom Van Court:
Single pass streaming BLAST on FPGAs. Parallel Comput. 33(10-11): 741-756 (2007) - 2006
- [j9]Tom Van Court, Yongfeng Gu, Vikas Mundada, Martin C. Herbordt:
Rigid Molecule Docking: FPGA Reconfiguration for Alternative Force Laws. EURASIP J. Adv. Signal Process. 2006 (2006) - 2004
- [j8]Martin C. Herbordt, Jade Cravy, Honghai Zhang:
Array control for high-performance SIMD systems. J. Parallel Distributed Comput. 64(3): 400-413 (2004) - [j7]Tom Van Court, Martin C. Herbordt, Richard J. Barton:
Case study of a functional genomics application for an FPGA-based coprocessor. Microprocess. Microsystems 28(5-6): 213-222 (2004) - 2000
- [j6]Martin C. Herbordt, Jade Cravy, Renoy Sam, Owais Kidwai, Calvin Lin:
A System for Evaluating Performance and Cost of SIMD Array Designs. J. Parallel Distributed Comput. 60(2): 217-246 (2000) - 1999
- [j5]Bojana Obrenic, Martin C. Herbordt, Arnold L. Rosenberg, Charles C. Weems:
Using Emulations to Enhance the Performance of Parallel Architectures. IEEE Trans. Parallel Distributed Syst. 10(10): 1067-1081 (1999) - 1995
- [j4]Martin C. Herbordt, Charles C. Weems:
Enpassant: An Environment for Evaluating Massively Parallel Array Architectures for Spatially Mapped Applications. Int. J. Pattern Recognit. Artif. Intell. 9(2): 175-200 (1995) - 1994
- [j3]Martin C. Herbordt, James C. Corbett, Charles C. Weems, John Spalding:
Practical Algorithms for Online Routing on Fixed and Reconfigurable Meshes. J. Parallel Distributed Comput. 20(3): 341-356 (1994) - 1992
- [j2]Martin C. Herbordt, Charles C. Weems, Michael J. Scudder:
Nonuniform region processing on SIMD arrays using the coterie network. Mach. Vis. Appl. 5(2): 105-125 (1992) - 1991
- [j1]Martin C. Herbordt, Charles C. Weems, James C. Corbett:
Message-passing algorithms for a SIMD torus with coteries. SIGARCH Comput. Archit. News 19(1): 69-78 (1991)
Conference and Workshop Papers
- 2024
- [c117]Pouya Haghi, Cheng Tan, Anqi Guo, Chunshu Wu, Dongfang Liu, Ang Li, Anthony Skjellum, Tong Geng, Martin C. Herbordt:
SmartFuse: Reconfigurable Smart Switches to Accelerate Fused Collectives in HPC Applications. ICS 2024: 413-425 - [c116]Sahan Bandara, Ahmed Sanaullah, Zaid Tahir, Ulrich Drepper, Martin C. Herbordt:
Performance Evaluation of VirtIO Device Drivers for Host-FPGA PCIe Communication. IPDPS (Workshops) 2024: 169-176 - [c115]Zaid Tahir, Sahan Bandara, Martin C. Herbordt:
Multi-Core Multi-Rule VeBPF Firewall for Secure FPGA IoT Device Deployments. IPDPS (Workshops) 2024: 193 - [c114]Reza Sajjadinasab, Hamed Rastaghi, Hafsah Shahzad, Sanjay Arora, Ulrich Drepper, Martin C. Herbordt:
Further Optimizations and Analysis of Smith-Waterman with Vector Extensions. IPDPS (Workshops) 2024: 561-570 - [c113]Hafsah Shahzad, Ahmed Sanaullah, Sanjay Arora, Ulrich Drepper, Martin C. Herbordt:
AutoAnnotate: Reinforcement Learning based Code Annotation for High Level Synthesis. ISQED 2024: 1-9 - 2023
- [c112]Robert Munafo, Hafsah Shahzad, Ahmed Sanaullah, Sanjay Arora, Ulrich Drepper, Martin C. Herbordt:
Improved Models for Policy-Agent Learning of Compiler Directives in HLS. HPEC 2023: 1-8 - [c111]Anqi Guo
, Yuchen Hao
, Chunshu Wu
, Pouya Haghi
, Zhenyu Pan
, Min Si
, Dingwen Tao
, Ang Li
, Martin C. Herbordt
, Tong Geng
:
Software-Hardware Co-design of Heterogeneous SmartNIC System for Recommendation Models Inference and Training. ICS 2023: 336-347 - [c110]Pouya Haghi
, William Krska
, Cheng Tan
, Tong Geng
, Po-Hao Chen
, Connor Greenwood
, Anqi Guo
, Thomas M. Hines
, Chunshu Wu
, Ang Li
, Anthony Skjellum
, Martin C. Herbordt
:
FLASH: FPGA-Accelerated Smart Switches with GCN Case Study. ICS 2023: 450-462 - [c109]Chunshu Wu
, Tong Geng
, Anqi Guo
, Sahan Bandara
, Pouya Haghi
, Chuan Liu
, Ang Li
, Martin C. Herbordt
:
FASDA: An FPGA-Aided, Scalable and Distributed Accelerator for Range-Limited Molecular Dynamics. SC 2023: 98:1-98:14 - 2022
- [c108]Anqi Guo, Tong Geng, Yongan Zhang, Pouya Haghi, Chunshu Wu, Cheng Tan, Yingyan Lin, Ang Li, Martin C. Herbordt:
FCsN: A FPGA-Centric SmartNIC Framework for Neural Networks. FCCM 2022: 1-2 - [c107]Rushi Patel, Pouya Haghi, Shweta Jain, Andriy Kot, Venkata Krishnan, Mayank Varia, Martin C. Herbordt:
COPA Use Case: Distributed Secure Joint Computation. FCCM 2022: 1-2 - [c106]Anqi Guo, Tong Geng, Yongan Zhang, Pouya Haghi, Chunshu Wu, Cheng Tan, Yingyan Lin, Ang Li, Martin C. Herbordt:
A Framework for Neural Network Inference on FPGA-Centric SmartNICs. FPL 2022: 1-8 - [c105]Chunshu Wu, Sahan Bandara, Tong Geng, Anqi Guo, Pouya Haghi, Vipin Sachdeva, Woody Sherman, Martin C. Herbordt:
Optimized Mappings for Symmetric Range-Limited Molecular Force Calculations on FPGAs. FPL 2022: 101-108 - [c104]Chengming Zhang, Tong Geng, Anqi Guo, Jiannan Tian, Martin C. Herbordt, Ang Li, Dingwen Tao:
H-GCN: A Graph Convolutional Network Accelerator on Versal ACAP Architecture. FPL 2022: 200-208 - [c103]Sahan Bandara, Ahmed Sanaullah, Zaid Tahir, Ulrich Drepper, Martin C. Herbordt:
Enabling VirtIO Driver Support on FPGAs. H2RC@SC 2022: 1-8 - [c102]Po-Hao Chen, Pouya Haghi, Jae Yoon Chung, Tong Geng, Richard West, Anthony Skjellum, Martin C. Herbordt:
The Viability of Using Online Prediction to Perform Extra Work while Executing BSP Applications. HPEC 2022: 1-7 - [c101]Rushi Patel, Pouya Haghi, Shweta Jain, Andriy Kot, Venkata Krishnan, Mayank Varia, Martin C. Herbordt:
Distributed Hardware Accelerated Secure Joint Computation on the COPA Framework. HPEC 2022: 1-7 - [c100]Hafsah Shahzad, Ahmed Sanaullah, Sanjay Arora, Robert Munafo, Xiteng Yao, Ulrich Drepper, Martin C. Herbordt:
Reinforcement Learning Strategies for Compiler Optimization in High level Synthesis. LLVM-HPC@SC 2022: 13-22 - 2021
- [c99]Michael Zink, David E. Irwin, Emmanuel Cecchet, Hakan Saplakoglu, Orran Krieger, Martin C. Herbordt, Michael Daitzman, Peter Desnoyers, Miriam Leeser, Suranga Handagala:
The Open Cloud Testbed (OCT): A Platform for Research into new Cloud Technologies. CloudNet 2021: 140-147 - [c98]Chunshu Wu, Tong Geng, Sahan Bandara, Chen Yang, Vipin Sachdeva, Woody Sherman, Martin C. Herbordt:
Upgrade of FPGA Range-Limited Molecular Dynamics to Handle Hundreds of Processors. FCCM 2021: 142-151 - [c97]Lawrence C. Stewart, Carlo Pascoe, Emery Davis, Brian W. Sherman, Martin C. Herbordt, Vipin Sachdeva:
Particle Mesh Ewald for Molecular Dynamics in OpenCL on an FPGA Cluster. FCCM 2021: 270 - [c96]Tong Geng, Chunshu Wu, Cheng Tan, Chenhao Xie, Anqi Guo, Pouya Haghi, Sarah Yuan He, Jiajia Li
, Martin C. Herbordt, Ang Li:
A Survey: Handling Irregularities in Neural Network Acceleration with FPGAs. HPEC 2021: 1-8 - [c95]Pouya Haghi, Anqi Guo, Tong Geng, Anthony Skjellum, Martin C. Herbordt:
Workload Imbalance in HPC Applications: Effect on Performance of In-Network Processing. HPEC 2021: 1-8 - [c94]Hafsah Shahzad, Ahmed Sanaullah, Martin C. Herbordt:
Survey and Future Trends for FPGA Cloud Architectures. HPEC 2021: 1-10 - [c93]Chunshu Wu, Sahan Bandara, Tong Geng, Vipin Sachdeva, Woody Sherman, Martin C. Herbordt:
System-Level Modeling of GPU/FPGA Clusters for Molecular Dynamics Simulations. HPEC 2021: 1-8 - [c92]Tong Geng, Chunshu Wu, Yongan Zhang, Cheng Tan
, Chenhao Xie, Haoran You, Martin C. Herbordt, Yingyan Lin, Ang Li:
I-GCN: A Graph Convolutional Network Accelerator with Runtime Locality Enhancement through Islandization. MICRO 2021: 1051-1063 - 2020
- [c91]Pouya Haghi
, Tong Geng, Anqi Guo, Tianqi Wang, Martin C. Herbordt:
FP-AMG: FPGA-Based Acceleration Framework for Algebraic Multigrid Solvers. FCCM 2020: 148-156 - [c90]Qingqing Xiong, Chen Yang, Pouya Haghi
, Anthony Skjellum, Martin C. Herbordt:
Accelerating MPI Collectives with FPGAs in the Network and Novel Communicator Support. FCCM 2020: 215 - [c89]Pierre-Francois Wolfe
, Rushi Patel, Robert Munafo, Mayank Varia, Martin C. Herbordt:
Secret Sharing MPC on FPGAs in the Datacenter. FPL 2020: 236-242 - [c88]Tong Geng, Chunshu Wu, Cheng Tan
, Bo Fang, Ang Li, Martin C. Herbordt:
CQNN: a CGRA-based QNN Framework. HPEC 2020: 1-7 - [c87]Pouya Haghi
, Anqi Guo, Qingqing Xiong, Rushi Patel, Chen Yang, Tong Geng, Justin T. Broaddus, Ryan J. Marshall, Anthony Skjellum, Martin C. Herbordt:
FPGAs in the Network and Novel Communicator Support Accelerate MPI Collectives. HPEC 2020: 1-10 - [c86]Carlo Pascoe, Lawrence C. Stewart, Brian W. Sherman, Vipin Sachdeva, Martin C. Herbordt:
Execution of Complete Molecular Dynamics Simulations on Multiple FPGAs. HPEC 2020: 1-2 - [c85]Rushi Patel, Pierre-Francois Wolfe
, Robert Munafo, Mayank Varia, Martin C. Herbordt:
Arithmetic and Boolean Secret Sharing MPC on FPGAs in the Data Center. HPEC 2020: 1-8 - [c84]Chunshu Wu, Tong Geng, Chen Yang, Vipin Sachdeva, Woody Sherman, Martin C. Herbordt:
A Communication-Efficient Multi-Chip Design for Range-Limited Molecular Dynamics. HPEC 2020: 1-8 - [c83]Pouya Haghi
, Anqi Guo, Tong Geng, Justin T. Broaddus, Derek Schafer, Anthony Skjellum, Martin C. Herbordt:
A Reconfigurable Compute-in-the-Network FPGA Assistant for High-Level Collective Support with Distributed Matrix Multiply Case Study. FPT 2020: 159-164 - [c82]Runbin Shi, Peiyan Dong, Tong Geng, Yuhao Ding, Xiaolong Ma, Hayden Kwok-Hay So
, Martin C. Herbordt, Ang Li, Yanzhi Wang:
CSB-RNN: a faster-than-realtime RNN acceleration framework with compressed structured blocks. ICS 2020: 24:1-24:12 - [c81]Tong Geng, Ang Li, Runbin Shi, Chunshu Wu, Tianqi Wang, Yanfei Li, Pouya Haghi
, Antonino Tumeo, Shuai Che, Steven K. Reinhardt, Martin C. Herbordt:
AWB-GCN: A Graph Convolutional Network Accelerator with Runtime Workload Rebalancing. MICRO 2020: 922-936 - 2019
- [c80]Tong Geng, Tianqi Wang, Chunshu Wu, Chen Yang, Shuaiwen Leon Song, Ang Li, Martin C. Herbordt:
LP-BNN: Ultra-low-Latency BNN Inference with Layer Parallelism. ASAP 2019: 9-16 - [c79]Tianqi Wang, Tong Geng, Xi Jin, Martin C. Herbordt:
Accelerating AP3M-Based Computational Astrophysics Simulations with Reconfigurable Clusters. ASAP 2019: 181-184 - [c78]Chen Yang, Tong Geng, Tianqi Wang, Charles Lin, Jiayi Sheng, Vipin Sachdeva
, Woody Sherman
, Martin C. Herbordt:
Molecular Dynamics Range-Limited Force Evaluation Optimized for FPGAs. ASAP 2019: 263-271 - [c77]Tianqi Wang, Tong Geng, Xi Jin, Martin C. Herbordt:
FP-AMR: A Reconfigurable Fabric Framework for Adaptive Mesh Refinement Applications. FCCM 2019: 245-253 - [c76]Qingqing Xiong, Rushi Patel, Chen Yang, Tong Geng, Anthony Skjellum, Martin C. Herbordt:
GhostSZ: A Transparent FPGA-Accelerated Lossy Compression Framework. FCCM 2019: 258-266 - [c75]Tong Geng, Tianqi Wang, Chunshu Wu, Chen Yang, Wei Wu
, Ang Li, Martin C. Herbordt:
O3BNN: an out-of-order architecture for high-performance binarized neural network inference with fine-grained pruning. ICS 2019: 461-472 - [c74]Ang Li, Tong Geng, Tianqi Wang, Martin C. Herbordt, Shuaiwen Leon Song, Kevin J. Barker
:
BSTC: a novel binarized-soft-tensor-core design for accelerating bit-based approximated neural nets. SC 2019: 38:1-38:30 - [c73]Chen Yang, Tong Geng, Tianqi Wang, Rushi Patel, Qingqing Xiong, Ahmed Sanaullah, Chunshu Wu, Jiayi Sheng, Charles Lin, Vipin Sachdeva
, Woody Sherman
, Martin C. Herbordt:
Fully integrated FPGA molecular dynamics simulations. SC 2019: 67:1-67:31 - 2018
- [c72]Tong Geng, Tianqi Wang, Ahmed Sanaullah, Chen Yang, Rui Xu, Rushi Patel, Martin C. Herbordt:
FPDeep: Acceleration and Load Balancing of CNN Training on FPGA Clusters. FCCM 2018: 81-84 - [c71]Jiayi Sheng, Chen Yang, Tianqi Wang, Martin C. Herbordt:
High Performance Dynamic Communication on Reconfigurable Clusters. FCCM 2018: 219 - [c70]Qingqing Xiong, Anthony Skjellum, Martin C. Herbordt:
Accelerating MPI Message Matching through FPGA Offload. FPL 2018: 191-195 - [c69]Jiayi Sheng, Chen Yang, Martin C. Herbordt:
High Performance Communication on Reconfigurable Clusters. FPL 2018: 219-223 - [c68]Tong Geng, Tianqi Wang, Ahmed Sanaullah, Chen Yang, Rushi Patel, Martin C. Herbordt:
A Framework for Acceleration of CNN Training on Deeply-Pipelined FPGA Clusters with Work and Weight Load Balancing. FPL 2018: 394-398 - [c67]Ahmed Sanaullah, Rushi Patel, Martin C. Herbordt:
An Empirically Guided Optimization Framework for FPGA OpenCL. FPT 2018: 46-53 - [c66]Ahmed Sanaullah, Martin C. Herbordt:
FPGA HPC using OpenCL: Case Study in 3D FFT. HEART 2018: 7:1-7:6 - [c65]Tong Geng, Erkan Diken, Tianqi Wang, Lech Józwiak, Martin C. Herbordt:
An Access-Pattern-Aware On-Chip Vector Memory System with Automatic Loading for SIMD Architectures. HPEC 2018: 1-7 - [c64]Peter Jamieson, Ahmed Sanaullah, Martin C. Herbordt:
Benchmarking Heterogeneous HPC Systems Including Reconfigurable Fabrics: Community Aspirations for Ideal Comparisons. HPEC 2018: 1-6 - [c63]Ahmed Sanaullah, Martin C. Herbordt:
Unlocking Performance-Programmability by Penetrating the Intel FPGA OpenCL Toolflow. HPEC 2018: 1-8 - [c62]Ahmed Sanaullah, Chen Yang, Yuri Alexeev, Kazutomo Yoshii, Martin C. Herbordt:
Application Aware Tuning of Reconfigurable Multi-Layer Perceptron Architectures. HPEC 2018: 1-9 - [c61]Zikun Xiang, Tianqi Wang, Tong Geng, Tian Xiang, Xi Jin, Martin C. Herbordt:
Soft-Core. Multiple-Lane, FPGA-based ADCs for a Liquid Helium Environment. HPEC 2018: 1-6 - [c60]Qingqing Xiong, Emre Ates
, Martin C. Herbordt, Ayse K. Coskun:
Tangram: Colocating HPC Applications with Oversubscription. HPEC 2018: 1-7 - [c59]Qingqing Xiong, Purushotham V. Bangalore, Anthony Skjellum, Martin C. Herbordt:
MPI Derived Datatypes: Performance and Portability Issues. EuroMPI 2018: 15:1-15:10 - 2017
- [c58]Qingqing Xiong, Martin C. Herbordt:
Bonded Force Computations on FPGAs. FCCM 2017: 72-75 - [c57]Jiayi Sheng, Chen Yang, Ahmed Sanaullah, Michael Papamichael, Adrian M. Caulfield, Martin C. Herbordt:
HPC on FPGA clouds: 3D FFTs and implications for molecular dynamics. FPL 2017: 1-4 - [c56]Chen Yang, Jiayi Sheng, Rushi Patel, Ahmed Sanaullah, Vipin Sachdeva
, Martin C. Herbordt:
OpenCL for HPC with FPGAs: Case study in molecular electrostatics. HPEC 2017: 1-8 - [c55]Chen Yang, Jiayi Sheng, Aravind Sridhar, Martin C. Herbordt, Catherine Nicoloff
, James B. R. Battat:
An FPGA-based data acquisition system for directional dark matter detection. HPEC 2017: 1-8 - 2016
- [c54]Ahmed Sanaullah, Arash Khoshparvar, Martin C. Herbordt:
FPGA-Accelerated Particle-Grid Mapping. FCCM 2016: 192-195 - [c53]Jiayi Sheng, Qingqing Xiong, Chen Yang, Martin C. Herbordt:
Application-Aware Collective Communication (Extended Abstract). FCCM 2016: 197 - [c52]Alan D. George, Martin C. Herbordt, Herman Lam, Abhijeet G. Lawande, Jiayi Sheng, Chen Yang:
Novo-G#: Large-scale reconfigurable computing with direct and programmable interconnects. HPEC 2016: 1-7 - [c51]Yinan Liu, Jiayi Sheng, Martin C. Herbordt:
A hardware design for in-brain neural spike sorting. HPEC 2016: 1-6 - [c50]Ahmed Sanaullah, Saiful A. Mojumder, Kathleen M. Lewis, Martin C. Herbordt:
GPU-accelerated charge mapping. HPEC 2016: 1-7 - 2015
- [c49]Jiayi Sheng, Chen Yang, Martin C. Herbordt:
Hardware-efficient compressed sensing encoder designs for WBSNs. HPEC 2015: 1-7 - 2014
- [c48]Benjamin Humphries, Hansen Zhang, Jiayi Sheng, Raphael Landaverde, Martin C. Herbordt:
3D FFTs on a Single FPGA. FCCM 2014: 68-71 - [c47]Raphael Landaverde, Martin C. Herbordt:
GPU optimizations for a production molecular docking code. HPEC 2014: 1-6 - [c46]Raphael Landaverde, Tiansheng Zhang
, Ayse K. Coskun, Martin C. Herbordt:
An investigation of Unified Memory Access performance in CUDA. HPEC 2014: 1-6 - [c45]Jiayi Sheng, Ben Humphries, Hansen Zhang, Martin C. Herbordt:
Design of 3D FFTs with FPGA clusters. HPEC 2014: 1-6 - 2013
- [c44]Martin C. Herbordt:
Architecture/algorithm codesign of molecular dynamics processors. ACSSC 2013: 1442-1446 - [c43]Ben Humphries, Martin C. Herbordt:
3D FFT for FPGAs. HPEC 2013: 1-2 - 2012
- [c42]Atabak Mahram, Martin C. Herbordt:
FMSA: FPGA-Accelerated ClustalW-Based Multiple Sequence Alignment through Pipelined Prefiltering. FCCM 2012: 177-183 - [c41]Atabak Mahram, Martin C. Herbordt:
CAAD BLASTP 2.0: NCBI BLASTP accelerated with pipelined filters. FPL 2012: 217-223 - 2011
- [c40]Matt Chiu, Md. Ashfaquzzaman Khan, Martin C. Herbordt:
Efficient Calculation of Pairwise Nonbonded Forces. FCCM 2011: 73-76 - [c39]Md. Ashfaquzzaman Khan, Can Hankendi, Ayse Kivilcim Coskun, Martin C. Herbordt:
Software optimization for performance, energy, and thermal distribution: Initial case studies. IGCC 2011: 1-6 - 2010
- [c38]Atabak Mahram, Martin C. Herbordt:
Fast and accurate NCBI BLASTP: acceleration with multiphase FPGA-based prefiltering. ICS 2010: 73-82 - [c37]Bharat Sukhwani, Martin C. Herbordt:
Fast binding site mapping using GPUs and CUDA. IPDPS Workshops 2010: 1-8 - [c36]Jin H. Park, Yunfei Qiu, Martin C. Herbordt:
CAAD BLASTn: Accelerated NCBI BLASTn with FPGA prefiltering. ISCAS 2010: 3797-3800 - [c35]Matt Chiu, Martin C. Herbordt:
Towards production FPGA-accelerated molecular dynamics: Progress and challenges. HPRCTA@SC 2010: 1-8 - 2009
- [c34]Martin C. Herbordt, Md. Ashfaquzzaman Khan, Tony Dean:
Parallel Discrete Event Simulation of Molecular Dynamics Through Event-Based Decomposition. ASAP 2009: 129-136 - [c33]Bharat Sukhwani, Martin C. Herbordt:
GPU acceleration of a production molecular docking code. GPGPU 2009: 19-27 - [c32]Jin H. Park, Yunfei Qiu, Martin C. Herbordt:
CAAD BLASTP: NCBI BLASTP Accelerated with FPGA-Based Accelerated Pre-Filtering. FCCM 2009: 81-87 - [c31]Matt Chiu, Martin C. Herbordt:
Efficient particle-pair filtering for acceleration of molecular dynamics simulation. FPL 2009: 345-352 - [c30]Bharat Sukhwani, Martin C. Herbordt:
FPGA-based acceleration of CHARMM-potential minimization. HPRCTA@SC 2009: 1-10 - 2008
- [c29]Martin C. Herbordt, Francois Kosie, Josh Model:
An Efficient O(1) Priority Queue for Large FPGA-Based Discrete Event Simulations of Molecular Dynamics. FCCM 2008: 248-257 - [c28]Bharat Sukhwani, Martin C. Herbordt:
Acceleration of a production rigid molecule docking code. FPL 2008: 341-346 - [c27]Matt Chiu, Martin C. Herbordt, Martin Langhammer:
Performance potential of molecular dynamics simulations on high performance reconfigurable computing systems. HPRCTA@SC 2008: 1-10 - 2007
- [c26]Yongfeng Gu, Martin C. Herbordt:
FPGA-Based Multigrid Computation for Molecular Dynamics Simulations. FCCM 2007: 117-126 - [c25]Josh Model, Martin C. Herbordt:
Discrete Event Simulation of Molecular Dynamics with Configurable Logic. FPL 2007: 151-158 - 2006
- [c24]Martin C. Herbordt, Josh Model, Yongfeng Gu, Bharat Sukhwani, Tom Van Court:
Single Pass, BLAST-Like, Approximate String Matching on FPGAs. FCCM 2006: 217-226 - [c23]Tom Van Court, Martin C. Herbordt:
Application-Specific Memory Interleaving Enables High Performance in FPGA-based Grid Computations. FCCM 2006: 305-306 - [c22]Yongfeng Gu, Tom Van Court, Martin C. Herbordt:
Integrating FPGA Acceleration into the Protomol Molecular Dynamics Code: Preliminary Report. FCCM 2006: 315-316 - [c21]Tom Van Court, Martin C. Herbordt:
Application-Specific Memory Interleaving for FPGA-Based Grid Computations: A General Design Technique. FPL 2006: 1-7 - [c20]Tom Van Court, Martin C. Herbordt:
Sizing of Processing Arrays for FPGA-Based Computation. FPL 2006: 1-6 - [c19]Yongfeng Gu, Tom Van Court, Martin C. Herbordt:
Improved Interpolation and System Integration for FPGA-Based Molecular Dynamics Simulations. FPL 2006: 1-8 - 2005
- [c18]Tom Van Court, Yongfeng Gu, Martin C. Herbordt:
Three-Dimensional Template Correlation: Object Recognition in 3D Voxel Data. CAMP 2005: 153-158 - [c17]Yongfeng Gu, Tom Van Court, Douglas DiSabello, Martin C. Herbordt:
Preliminary Report: FPGA Acceleration of Molecular Dynamics Computations. FCCM 2005: 269-270 - [c16]Yongfeng Gu, Tom Van Court, Martin C. Herbordt:
Accelerating Molecular Dynamics Simulations With Configurable Circuits. FPL 2005: 475-480 - [c15]Tom Van Court, Martin C. Herbordt:
LAMP: A Tool Suite for Families of FPGA-Based Application Accelerators. FPL 2005: 612-617 - 2004
- [c14]Tom Van Court, Martin C. Herbordt:
Families of FPGA-Based Algorithms for Approximate String Matching. ASAP 2004: 354-364 - [c13]Tom Van Court, Yongfeng Gu, Martin C. Herbordt:
FPGA Acceleration of Rigid Molecule Interactions. FCCM 2004: 300-301 - [c12]Tom Van Court, Yongfeng Gu, Martin C. Herbordt:
FPGA Acceleration of Rigid Molecule Interactions. FPL 2004: 862-867 - [c11]Albert A. Conti, Tom Van Court, Martin C. Herbordt:
Processing Repetitive Sequence Structures with Mismatches at Streaming Rate. FPL 2004: 1080-1083 - 2003
- [c10]Tom Van Court, Martin C. Herbordt, Richard J. Barton:
Case Study of a Functional Genomics Application. FPL 2003: 365-374 - 2000
- [c9]Martin C. Herbordt, Honghai Zhang, Calvin Lin, Hong Rao, Jade Cravy:
Control for High-Speed PE Arrays. ASAP 2000: 247-257 - [c8]Martin C. Herbordt, Jade Cravy, Honghai Zhang, Calvin Lin, Hong Rao:
An Array Control Unit for High Performance SIMD Arrays. CAMP 2000: 293-301 - 1997
- [c7]Martin C. Herbordt, Owais Kidwai, Charles C. Weems:
Preprototyping SIMD Coprocessors Using Virtual Machine Emulation and Trace Compilation. SIGMETRICS 1997: 88-99 - 1995
- [c6]Martin C. Herbordt, Charles C. Weems:
An empirical study of datapath, memory hierarchy, and network in SIMD array architectures. ICCD 1995: 546-551 - [c5]Martin C. Herbordt, Charles C. Weems:
Experimental Analysis of Some SIMD Array Memory Hierarchies. ICPP (1) 1995: 210-214 - 1991
- [c4]Martin C. Herbordt, Charles C. Weems, Michael J. Scudder:
A computational framework and SIMD algorithms for low-level support of intermediate level vision processing. CVPR 1991: 740-741 - [c3]Martin C. Herbordt, Charles C. Weems:
Multi-associativity: A Framework for Solving Multiple Non-uniform Problem Instances Simultaneously on SIMD Arrays. ICPP (3) 1991: 219-223 - 1990
- [c2]Martin C. Herbordt, Charles C. Weems, David B. Shu:
Routing on the CAAPP. ICPR (2) 1990: 467-471 - [c1]Martin C. Herbordt, Charles C. Weems, James C. Corbett:
Message-Passing Algorithms for a SIMD Torus with Coteries. SPAA 1990: 11-20
Parts in Books or Collections
- 2014
- [p1]Bharat Sukhwani, Martin C. Herbordt:
Increasing Parallelism and Reducing Thread Contentions in Mapping Localized N-Body Simulations to GPUs. Numerical Computations with GPUs 2014: 379-405
Informal and Other Publications
- 2023
- [i10]Pouya Haghi, Ryan J. Marshall, Po-Hao Chen, Anthony Skjellum, Martin C. Herbordt:
A Survey of Potential MPI Complex Collectives: Large-Scale Mining and Analysis of HPC Applications. CoRR abs/2305.19946 (2023) - 2022
- [i9]Tong Geng, Chunshu Wu, Yongan Zhang, Cheng Tan, Chenhao Xie, Haoran You, Martin C. Herbordt, Yingyan Lin, Ang Li:
I-GCN: A Graph Convolutional Network Accelerator with Runtime Locality Enhancement through Islandization. CoRR abs/2203.03606 (2022) - [i8]Rushi Patel, Pouya Haghi, Shweta Jain, Andriy Kot, Venkata Krishnan, Mayank Varia, Martin C. Herbordt:
Distributed Hardware Accelerated Secure Joint Computation on the COPA Framework. CoRR abs/2204.04816 (2022) - [i7]Chengming Zhang, Tong Geng, Anqi Guo, Jiannan Tian, Martin C. Herbordt, Ang Li, Dingwen Tao:
H-GCN: A Graph Convolutional Network Accelerator on Versal ACAP Architecture. CoRR abs/2206.13734 (2022) - 2020
- [i6]Runbin Shi, Peiyan Dong, Tong Geng, Yuhao Ding, Xiaolong Ma, Hayden Kwok-Hay So, Martin C. Herbordt, Ang Li, Yanzhi Wang:
CSB-RNN: A Faster-than-Realtime RNN Acceleration Framework with Compressed Structured Blocks. CoRR abs/2005.05758 (2020) - [i5]Pierre-Francois Wolfe
, Rushi Patel, Robert Munafo, Mayank Varia, Martin C. Herbordt:
Secret Sharing MPC on FPGAs in the Datacenter. CoRR abs/2007.00826 (2020) - [i4]Lawrence C. Stewart, Carlo Pascoe, Brian W. Sherman, Martin C. Herbordt, Vipin Sachdeva:
An OpenCL 3D FFT for Molecular Dynamics Simulations on Multiple FPGAs. CoRR abs/2009.12617 (2020) - 2019
- [i3]Tong Geng, Tianqi Wang, Ang Li, Xi Jin, Martin C. Herbordt:
A Scalable Framework for Acceleration of CNN Training on Deeply-Pipelined FPGA Clusters with Weight and Workload Balancing. CoRR abs/1901.01007 (2019) - [i2]Chen Yang, Tong Geng, Tianqi Wang, Rushi Patel, Qingqing Xiong, Ahmed Sanaullah, Jiayi Sheng, Charles Lin, Vipin Sachdeva, Woody Sherman, Martin C. Herbordt:
Fully Integrated On-FPGA Molecular Dynamics Simulations. CoRR abs/1905.05359 (2019) - [i1]Tong Geng, Ang Li, Tianqi Wang, Chunshu Wu, Yanfei Li, Antonino Tumeo, Martin C. Herbordt:
UWB-GCN: Hardware Acceleration of Graph-Convolution-Network through Runtime Workload Rebalancing. CoRR abs/1908.10834 (2019)
Coauthor Index
![](https://dblp.dagstuhl.de/img/cog.dark.24x24.png)
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