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ORCIDFarzad Farnoud
Farzad Farnoud Hassanzadeh
Person information
- affiliation: University of Virginia, VA, USA
- affiliation (former): California Institute of Technology, Department of Electrical Engineering, Pasadena, CA, USA
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Journal Articles
- 2024
[j25]Shuche Wang
, Yuanyuan Tang, Jin Sima, Ryan Gabrys, Farzad Farnoud:
Non-Binary Codes for Correcting a Burst of at Most t Deletions. IEEE Trans. Inf. Theory 70(2): 964-979 (2024)- 2023
- [j24]Yuanyuan Tang, Shuche Wang, Hao Lou, Ryan Gabrys, Farzad Farnoud:
Low-Redundancy Codes for Correcting Multiple Short-Duplication and Edit Errors. IEEE Trans. Inf. Theory 69(5): 2940-2954 (2023) - 2022
- [j23]Yuanyuan Tang, Farzad Farnoud:
Error-Correcting Codes for Short Tandem Duplication and Edit Errors. IEEE Trans. Inf. Theory 68(2): 871-880 (2022) - [j22]Hao Lou, Farzad Farnoud:
Data Deduplication With Random Substitutions. IEEE Trans. Inf. Theory 68(10): 6941-6963 (2022) - 2021
- [j21]Yuanyuan Tang, Farzad Farnoud:
Error-Correcting Codes for Noisy Duplication Channels. IEEE Trans. Inf. Theory 67(6): 3452-3463 (2021) - 2020
- [j20]Hao Lou, Moshe Schwartz, Jehoshua Bruck, Farzad Farnoud:
Evolution of $k$ -Mer Frequencies and Entropy in Duplication and Substitution Mutation Systems. IEEE Trans. Inf. Theory 66(5): 3171-3186 (2020) - [j19]Yuanyuan Tang, Yonatan Yehezkeally, Moshe Schwartz, Farzad Farnoud:
Single-Error Detection and Correction for Duplication and Substitution Channels. IEEE Trans. Inf. Theory 66(11): 6908-6919 (2020) - 2019
- [j18]Farzad Farnoud, Moshe Schwartz, Jehoshua Bruck:
Estimation of duplication history under a stochastic model for tandem repeats. BMC Bioinform. 20(1): 64 (2019) - [j17]Ryan Gabrys, Farzad Farnoud:
Reconciling Similar Sets of Data. IEEE Trans. Commun. 67(8): 5217-5229 (2019) - [j16]Ohad Elishco, Farzad Farnoud Hassanzadeh, Moshe Schwartz, Jehoshua Bruck:
The Entropy Rate of Some Pólya String Models. IEEE Trans. Inf. Theory 65(12): 8180-8193 (2019) - 2017
- [j15]Farzad Farnoud Hassanzadeh, Olgica Milenkovic, Gregory J. Puleo, Lili Su:
Computing similarity distances between rankings. Discret. Appl. Math. 232: 157-175 (2017) - [j14]Siddharth Jain, Farzad Farnoud Hassanzadeh, Moshe Schwartz, Jehoshua Bruck:
Duplication-Correcting Codes for Data Storage in the DNA of Living Organisms. IEEE Trans. Inf. Theory 63(8): 4996-5010 (2017) - [j13]Siddharth Jain, Farzad Farnoud Hassanzadeh, Jehoshua Bruck:
Capacity and Expressiveness of Genomic Tandem Duplication. IEEE Trans. Inf. Theory 63(10): 6129-6138 (2017) - [j12]Noga Alon, Jehoshua Bruck, Farzad Farnoud Hassanzadeh, Siddharth Jain:
Duplication Distance to the Root for Binary Sequences. IEEE Trans. Inf. Theory 63(12): 7793-7803 (2017) - 2016
- [j11]Minji Kim, Xiejia Zhang, Jonathan G. Ligo, Farzad Farnoud, Venugopal V. Veeravalli, Olgica Milenkovic:
MetaCRAM: an integrated pipeline for metagenomic taxonomy identification and compression. BMC Bioinform. 17: 94 (2016) - [j10]Farzad Farnoud, Eitan Yaakobi, Jehoshua Bruck:
Approximate sorting of data streams with limited storage. J. Comb. Optim. 32(4): 1133-1164 (2016) - [j9]Ryan Gabrys, Eitan Yaakobi, Farzad Farnoud, Frederic Sala, Jehoshua Bruck, Lara Dolecek:
Codes Correcting Erasures and Deletions for Rank Modulation. IEEE Trans. Inf. Theory 62(1): 136-150 (2016) - [j8]Farzad Farnoud Hassanzadeh, Moshe Schwartz, Jehoshua Bruck:
Bounds for Permutation Rate-Distortion. IEEE Trans. Inf. Theory 62(2): 703-712 (2016) - [j7]Farzad Farnoud Hassanzadeh, Moshe Schwartz, Jehoshua Bruck:
The Capacity of String-Duplication Systems. IEEE Trans. Inf. Theory 62(2): 811-824 (2016) - 2015
- [j6]Minji Kim, Farzad Farnoud, Olgica Milenkovic:
HyDRA: gene prioritization via hybrid distance-score rank aggregation. Bioinform. 31(7): 1034-1043 (2015) - 2014
- [j5]Farzad Farnoud Hassanzadeh, Olgica Milenkovic:
Multipermutation Codes in the Ulam Metric for Nonvolatile Memories. IEEE J. Sel. Areas Commun. 32(5): 919-932 (2014) - [j4]Farzad Farnoud Hassanzadeh, Olgica Milenkovic:
An Axiomatic Approach to Constructing Distances for Rank Comparison and Aggregation. IEEE Trans. Inf. Theory 60(10): 6417-6439 (2014) - 2013
- [j3]Farzad Farnoud, Vitaly Skachek, Olgica Milenkovic:
Error-Correction in Flash Memories via Codes in the Ulam Metric. IEEE Trans. Inf. Theory 59(5): 3003-3020 (2013) - 2012
- [j2]Farzad Farnoud, Olgica Milenkovic:
Sorting of Permutations by Cost-Constrained Transpositions. IEEE Trans. Inf. Theory 58(1): 3-23 (2012) - 2010
- [j1]S. M. Sadegh Tabatabaei Yazdi, Serap A. Savari, Gerhard Kramer, Kelli Carlson, Farzad Farnoud:
On the multimessage capacity region for undirected ring networks. IEEE Trans. Inf. Theory 56(4): 1930-1947 (2010)
Conference and Workshop Papers
- 2023
- [c51]Sarvin Motamen, Hao Lou, Farzad Farnoud:
A Statistical Analysis of Duplication Errors in the Nanopore Sequencing Channel. ACSSC 2023: 970-974 - [c50]Kallie Whritenour, Mete Civelek, Farzad Farnoud:
Constrained Code for Data Storage in DNA via Nanopore Sequencing. ACSSC 2023: 975-981 - [c49]Yuting Li, Farzad Farnoud:
Linial's Algorithm and Systematic Deletion-Correcting Codes. ISIT 2023: 2703-2707 - [c48]Yuanyuan Tang, Sarvin Motamen, Hao Lou, Kallie Whritenour, Shuche Wang, Ryan Gabrys, Farzad Farnoud:
Correcting a substring edit error of bounded length. ISIT 2023: 2720-2725 - 2022
- [c47]Yue Wu, Tao Jin, Hao Lou, Pan Xu, Farzad Farnoud, Quanquan Gu:
Adaptive Sampling for Heterogeneous Rank Aggregation from Noisy Pairwise Comparisons. AISTATS 2022: 11014-11036 - [c46]Shuche Wang, Yuanyuan Tang, Ryan Gabrys, Farzad Farnoud:
Permutation Codes for Correcting a Burst of at Most $t$ Deletions. Allerton 2022: 1-6 - [c45]Hao Lou, Farzad Farnoud:
Universal Compression of Large Alphabets with Constrained Compressors. ISIT 2022: 67-72 - [c44]Yuanyuan Tang, Shuche Wang, Ryan Gabrys, Farzad Farnoud:
Correcting multiple short duplication and substitution errors. ISIT 2022: 1797-1802 - [c43]Hao Lou, Tao Jin, Yue Wu, Pan Xu, Quanquan Gu, Farzad Farnoud:
Active Ranking without Strong Stochastic Transitivity. NeurIPS 2022 - 2021
- [c42]Yuanyuan Tang, Hao Lou, Farzad Farnoud:
Error-correcting codes for short tandem duplications and at most $p$ substitutions. ISIT 2021: 1835-1840 - [c41]Shuche Wang, Jin Sima, Farzad Farnoud:
Non-binary Codes for Correcting a Burst of at Most 2 Deletions. ISIT 2021: 2804-2809 - [c40]Hao Lou, Farzad Farnoud Hassanzadeh:
Asymptotic Analysis of Data Deduplication with a Constant Number of Substitutions. ISIT 2021: 3296-3301 - [c39]Yuanyuan Tang, Farzad Farnoud:
Correcting deletion errors in DNA data storage with enzymatic synthesis. ITW 2021: 1-6 - 2020
- [c38]Tao Jin, Pan Xu, Quanquan Gu, Farzad Farnoud:
Rank Aggregation via Heterogeneous Thurstone Preference Models. AAAI 2020: 4353-4360 - [c37]Yiming Wang, Hao Lou, Pankaj Kumar, Anindya Dutta, Farzad Farnoud:
Efficient Search of Circular Repeats and MicroDNA Reintegration in DNA Sequences. BIBE 2020: 89-96 - [c36]Siddharth Jain, Farzad Farnoud, Moshe Schwartz, Jehoshua Bruck:
Coding for Optimized Writing Rate in DNA Storage. ISIT 2020: 711-716 - [c35]Yuanyuan Tang, Farzad Farnoud:
Error-correcting Codes for Short Tandem Duplication and Substitution Errors. ISIT 2020: 734-739 - [c34]Hao Lou, Farzad Farnoud:
Data Deduplication with Random Substitutions. ISIT 2020: 2377-2382 - 2019
- [c33]Hao Lou, Farzad Farnoud Hassanzadeh:
Finite-Time Behavior of k-mer Frequencies and Waiting Times in Noisy-Duplication Systems. ACSSC 2019: 1379-1383 - [c32]Yuanyuan Tang, Farzad Farnoud Hassanzadeh:
Error-correcting Codes for Noisy Duplication Channels. Allerton 2019: 140-146 - [c31]Mohammad Khairul Bashar, Richard Hrdy, Antik Mallick, Farzad Farnoud Hassanzadeh, Nikhil Shukla:
Solving the Maximum Independent Set Problem using Coupled Relaxation Oscillators. DRC 2019: 187-188 - [c30]Yuanyuan Tang, Yonatan Yehezkeally, Moshe Schwartz, Farzad Farnoud Hassanzadeh:
Single-Error Detection and Correction for Duplication and Substitution Channels. ISIT 2019: 300-304 - 2018
- [c29]Hao Lou, Moshe Schwartz, Farzad Farnoud Hassanzadeh:
Evolution of N-Gram Frequencies Under Duplication and Substitution Mutations. ISIT 2018: 2246-2250 - 2017
- [c28]Ryan Gabrys, Farzad Farnoud Hassanzadeh:
Reconciling similar sets. Allerton 2017: 1139-1144 - [c27]Siddharth Jain, Farzad Farnoud Hassanzadeh, Moshe Schwartz, Jehoshua Bruck:
Noise and uncertainty in string-duplication systems. ISIT 2017: 3120-3124 - 2016
- [c26]Noga Alon, Jehoshua Bruck, Farzad Farnoud, Siddharth Jain:
On the duplication distance of binary strings. ISIT 2016: 260-264 - [c25]Ohad Elishco, Farzad Farnoud, Moshe Schwartz, Jehoshua Bruck:
The capacity of some Pólya string models. ISIT 2016: 270-274 - [c24]Siddharth Jain, Farzad Farnoud, Moshe Schwartz, Jehoshua Bruck:
Duplication-correcting codes for data storage in the DNA of living organisms. ISIT 2016: 1028-1032 - 2015
- [c23]Farzad Farnoud, Moshe Schwartz, Jehoshua Bruck:
A stochastic model for genomic interspersed duplication. ISIT 2015: 904-908 - [c22]Siddharth Jain, Farzad Farnoud, Jehoshua Bruck:
Capacity and expressiveness of genomic tandem duplication. ISIT 2015: 1946-1950 - [c21]Ryan Gabrys, Farzad Farnoud:
Reconciling similar sets of data. ISIT 2015: 2837-2841 - 2014
- [c20]Farzad Farnoud Hassanzadeh, Eitan Yaakobi, Jehoshua Bruck:
Approximate Sorting of Data Streams with Limited Storage. COCOON 2014: 465-476 - [c19]Farzad Farnoud, Moshe Schwartz, Jehoshua Bruck:
Bounds for permutation rate-distortion. ISIT 2014: 6-10 - [c18]Farzad Farnoud, Moshe Schwartz, Jehoshua Bruck:
The capacity of string-duplication systems. ISIT 2014: 1301-1305 - [c17]Lili Su, Farzad Farnoud, Olgica Milenkovic:
Similarity distances between permutations. ISIT 2014: 2267-2271 - [c16]Farzad Farnoud, Olgica Milenkovic:
Multipermutation codes in the Ulam metric. ISIT 2014: 2754-2758 - [c15]Ryan Gabrys, Eitan Yaakobi, Farzad Farnoud, Jehoshua Bruck:
Codes correcting erasures and deletions for rank modulation. ISIT 2014: 2759-2763 - [c14]Ryan Gabrys, Eitan Yaakobi, Farzad Farnoud, Frederic Sala, Jehoshua Bruck, Lara Dolecek:
Single-deletion-correcting codes over permutations. ISIT 2014: 2764-2768 - 2013
- [c13]Behrouz Touri, Farzad Farnoud, Angelia Nedic, Olgica Milenkovic:
A general framework for distributed vote aggregation. ACC 2013: 3827-3832 - [c12]Minji Kim, Fardad Raisali, Farzad Farnoud, Olgica Milenkovic:
Gene prioritization via weighted Kendall rank aggregation. CAMSAP 2013: 184-187 - [c11]Minji Kim, Jonathan G. Ligo, Amin Emad, Farzad Farnoud, Olgica Milenkovic, Venugopal V. Veeravalli:
MetaPar: Metagenomic sequence assembly via iterative reclassification. GlobalSIP 2013: 43-46 - [c10]Farzad Farnoud Hassanzadeh, Eitan Yaakobi, Behrouz Touri, Olgica Milenkovic, Jehoshua Bruck:
Building consensus via iterative voting. ISIT 2013: 1082-1086 - [c9]Fardad Raisali, Farzad Farnoud Hassanzadeh, Olgica Milenkovic:
Weighted rank aggregation via relaxed integer programming. ISIT 2013: 2765-2769 - [c8]Farzad Farnoud Hassanzadeh, Olgica Milenkovic:
Aggregating rankings with positional constraints. ITW 2013: 1-5 - 2012
- [c7]Farzad Farnoud, Narayana P. Santhanam, Olgica Milenkovic:
Alternating Markov chains for distribution estimation in the presence of errors. ISIT 2012: 2017-2021 - [c6]Farzad Farnoud, Vitaly Skachek, Olgica Milenkovic:
Rank modulation for translocation error correction. ISIT 2012: 2988-2992 - 2011
- [c5]Farzad Farnoud, Olgica Milenkovic:
Decomposing permutations via cost-constrained transpositions. ISIT 2011: 2095-2099 - 2010
- [c4]Farzad Farnoud, Chien-Yu Chen, Olgica Milenkovic, Navin Kashyap:
A graphical model for computing the minimum cost transposition distance. ITW 2010: 1-5 - 2009
- [c3]Farzad Farnoud, Shahrokh Valaee:
Reliable Broadcast of Safety Messages in Vehicular Ad Hoc Networks. INFOCOM 2009: 226-234 - [c2]Farzad Farnoud, Olgica Milenkovic, Narayana P. Santhanam:
Small-sample distribution estimation over sticky channels. ISIT 2009: 1125-1129 - 2007
- [c1]S. M. Sadegh Tabatabaei Yazdi, Serap A. Savari, Farzad Farnoud, Gerhard Kramer:
A Multimessage Capacity Region for Undirected Ring Networks. ISIT 2007: 1091-1095
Informal and Other Publications
- 2023
- [i27]Yue Wu, Tao Jin, Hao Lou, Farzad Farnoud, Quanquan Gu:
Borda Regret Minimization for Generalized Linear Dueling Bandits. CoRR abs/2303.08816 (2023) - [i26]Qiwei Di, Tao Jin, Yue Wu, Heyang Zhao, Farzad Farnoud, Quanquan Gu:
Variance-Aware Regret Bounds for Stochastic Contextual Dueling Bandits. CoRR abs/2310.00968 (2023) - 2022
- [i25]Yuanyuan Tang, Shuche Wang, Hao Lou, Ryan Gabrys, Farzad Farnoud:
Low-redundancy codes for correcting multiple short-duplication and edit errors. CoRR abs/2208.02330 (2022) - [i24]Shuche Wang, Yuanyuan Tang, Jin Sima, Ryan Gabrys, Farzad Farnoud:
Non-binary Codes for Correcting a Burst of at Most t Deletions. CoRR abs/2210.11818 (2022) - 2021
- [i23]Hao Lou, Farzad Farnoud:
Data Deduplication with Random Substitutions. CoRR abs/2107.00490 (2021) - [i22]Yue Wu, Tao Jin, Hao Lou, Pan Xu, Farzad Farnoud, Quanquan Gu:
Adaptive Sampling for Heterogeneous Rank Aggregation from Noisy Pairwise Comparisons. CoRR abs/2110.04136 (2021) - 2020
- [i21]Siddharth Jain, Farzad Farnoud, Moshe Schwartz, Jehoshua Bruck:
Coding for Optimized Writing Rate in DNA Storage. CoRR abs/2005.03248 (2020) - [i20]Yuanyuan Tang, Farzad Farnoud:
Error-correcting Codes for Noisy Duplication Channels. CoRR abs/2008.08174 (2020) - [i19]Yuanyuan Tang, Farzad Farnoud:
Error-correcting Codes for Short Tandem Duplication and Substitution Errors. CoRR abs/2011.05896 (2020) - 2019
- [i18]Yuanyuan Tang, Yonatan Yehezkeally, Moshe Schwartz, Farzad Farnoud:
Single-Error Detection and Correction for Duplication and Substitution Channels. CoRR abs/1911.05413 (2019) - [i17]Tao Jin, Pan Xu, Quanquan Gu, Farzad Farnoud:
Rank Aggregation via Heterogeneous Thurstone Preference Models. CoRR abs/1912.01211 (2019) - 2018
- [i16]Ohad Elishco, Farzad Farnoud, Moshe Schwartz, Jehoshua Bruck:
The Capacity of Some Pólya String Models. CoRR abs/1808.06062 (2018) - [i15]Ryan Gabrys, Farzad Farnoud:
Reconciling Similar Sets of Data. CoRR abs/1809.04702 (2018) - [i14]Hao Lou, Farzad Farnoud, Moshe Schwartz, Jehoshua Bruck:
Evolution of k-mer Frequencies and Entropy in Duplication and Substitution Mutation Systems. CoRR abs/1812.02250 (2018) - 2016
- [i13]Siddharth Jain, Farzad Farnoud, Moshe Schwartz, Jehoshua Bruck:
Duplication-Correcting Codes for Data Storage in the DNA of Living Organisms. CoRR abs/1606.00397 (2016) - [i12]Noga Alon, Jehoshua Bruck, Farzad Farnoud, Siddharth Jain:
Duplication Distance to the Root for Binary Sequences. CoRR abs/1611.05537 (2016) - 2015
- [i11]Siddharth Jain, Farzad Farnoud, Jehoshua Bruck:
Capacity and Expressiveness of Genomic Tandem Duplication. CoRR abs/1509.06029 (2015) - 2014
- [i10]Farzad Farnoud, Moshe Schwartz, Jehoshua Bruck:
Rate-Distortion for Ranking with Incomplete Information. CoRR abs/1401.3093 (2014) - [i9]Farzad Farnoud, Moshe Schwartz, Jehoshua Bruck:
The Capacity of String-Replication Systems. CoRR abs/1401.4634 (2014) - 2013
- [i8]Lili Su, Farzad Farnoud, Olgica Milenkovic:
Computing Similarity Distances Between Rankings. CoRR abs/1307.4339 (2013) - [i7]Farzad Farnoud, Olgica Milenkovic:
Multipermutation Codes in the Ulam Metric for Nonvolatile Memories. CoRR abs/1312.2163 (2013) - 2012
- [i6]Farzad Farnoud, Narayana P. Santhanam, Olgica Milenkovic:
Alternating Markov Chains for Distribution Estimation in the Presence of Errors. CoRR abs/1202.0925 (2012) - [i5]Farzad Farnoud, Vitaly Skachek, Olgica Milenkovic:
Rank Modulation for Translocation Error Correction. CoRR abs/1202.0932 (2012) - [i4]Farzad Farnoud, Behrouz Touri, Olgica Milenkovic:
Nonuniform Vote Aggregation Algorithms. CoRR abs/1206.5343 (2012) - [i3]Farzad Farnoud, Olgica Milenkovic, Behrouz Touri:
A Novel Distance-Based Approach to Constrained Rank Aggregation. CoRR abs/1212.1471 (2012) - [i2]Behrouz Touri, Farzad Farnoud, Angelia Nedic, Olgica Milenkovic:
A General Framework for Distributed Vote Aggregation. CoRR abs/1212.2607 (2012) - 2010
- [i1]Farzad Farnoud, Olgica Milenkovic:
Sorting of Permutations by Cost-Constrained Transpositions. CoRR abs/1007.4236 (2010)
Coauthor Index
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