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2020 – today
- 2020
[j14]Charlotte A. Darby
, Ravi Gaddipati, Michael C. Schatz, Ben Langmead:
Vargas: heuristic-free alignment for assessing linear and graph read aligners. Bioinform. 36(12): 3712-3718 (2020)
2010 – 2019
- 2019
- [j13]Sergey Aganezov, Ilya Zban, Vitaly Aksenov, Nikita Alexeev, Michael C. Schatz:
Recovering rearranged cancer chromosomes from karyotype graphs. BMC Bioinform. 20-S(20): 641 (2019) - 2017
- [j12]Gregory W. Vurture, Fritz J. Sedlazeck, Maria Nattestad, Charles J. Underwood, Han Fang, James Gurtowski, Michael C. Schatz:
GenomeScope: fast reference-free genome profiling from short reads. Bioinform. 33(14): 2202-2204 (2017) - 2016
- [j11]Maria Nattestad, Michael C. Schatz:
Assemblytics: a web analytics tool for the detection of variants from an assembly. Bioinform. 32(19): 3021-3023 (2016) - [c3]Mohammad Ruhul Amin, Steven Skiena, Michael C. Schatz:
NanoBLASTer: Fast alignment and characterization of Oxford Nanopore single molecule sequencing reads. ICCABS 2016: 1-6 - 2014
- [j10]Shoshana Marcus, Hayan Lee, Michael C. Schatz:
SplitMEM: a graphical algorithm for pan-genome analysis with suffix skips. Bioinform. 30(24): 3476-3483 (2014) - [j9]Matthew A. Titmus, James Gurtowski, Michael C. Schatz:
Answering the demands of digital genomics. Concurr. Comput. Pract. Exp. 26(4): 917-928 (2014) - [j8]Ivan Iossifov, Brian J. O'Roak, Stephan J. Sanders, Michael Ronemus, Niklas Krumm, Dan Levy, Holly A. Stessman, Kali T. Witherspoon, Laura Vives, Karynne E. Patterson, Joshua D. Smith, Bryan Paeper, Deborah A. Nickerson, Jeanselle Dea, Shan Dong, Luis E. Gonzalez, Jeffrey D. Mandell, Shrikant M. Mane, Michael T. Murtha, Catherine A. Sullivan, Michael F. Walker, Zainulabedin Waqar, Liping Wei, A. Jeremy Willsey, Boris Yamrom, Yoon-ha Lee, Ewa Grabowska, Ertugrul Dalkic, Zi-Hua Wang, Steven Marks, Peter Andrews, Anthony Leotta, Jude Kendall, Inessa Hakker, Julie Rosenbaum, Beicong Ma, Linda Rodgers, Jennifer Troge, Giuseppe Narzisi, Seungtai Yoon, Michael C. Schatz, Kenny Ye, W. Richard McCombie, Jay Shendure, Evan E. Eichler, Matthew W. State, Michael Wigler:
The contribution of de novo coding mutations to autism spectrum disorder. Nat. 515(7526): 216-221 (2014) - [c2]Giuseppe Narzisi, Bud Mishra, Michael C. Schatz:
On Algorithmic Complexity of Biomolecular Sequence Assembly Problem. AlCoB 2014: 183-195 - [c1]Philip D. Blood, Shoshana Marcus, Michael C. Schatz:
Large-scale Sequencing and Assembly of Cereal Genomes Using Blacklight. XSEDE 2014: 20:1-20:6 - 2013
- [j7]Michael C. Schatz, Adam M. Phillippy, Daniel D. Sommer, Arthur L. Delcher, Daniela Puiu, Giuseppe Narzisi, Steven L. Salzberg, Mihai Pop:
Hawkeye and AMOS: visualizing and assessing the quality of genome assemblies. Briefings Bioinform. 14(2): 213-224 (2013) - 2012
- [j6]Hayan Lee, Michael C. Schatz:
Genomic dark matter: the reliability of short read mapping illustrated by the genome mappability score. Bioinform. 28(16): 2097-2105 (2012) - 2010
- [j5]Carl Kingsford, Michael C. Schatz, Mihai Pop:
Assembly complexity of prokaryotic genomes using short reads. BMC Bioinform. 11: 21 (2010)
2000 – 2009
- 2009
- [j4]Michael C. Schatz:
CloudBurst: highly sensitive read mapping with MapReduce. Bioinform. 25(11): 1363-1369 (2009) - [j3]Saket Navlakha, Michael C. Schatz, Carl Kingsford:
Revealing Biological Modules via Graph Summarization. J. Comput. Biol. 16(2): 253-264 (2009) - [j2]Cole Trapnell, Michael C. Schatz:
Optimizing data intensive GPGPU computations for DNA sequence alignment. Parallel Comput. 35(8-9): 429-440 (2009) - 2007
- [j1]Michael C. Schatz, Cole Trapnell, Arthur L. Delcher, Amitabh Varshney:
High-throughput sequence alignment using Graphics Processing Units. BMC Bioinform. 8 (2007)
Coauthor Index
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