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2020 – today
- 2025
[j13]Xihao Li, Han Chen, Margaret Sunitha Selvaraj, Eric Van Buren, Hufeng Zhou, Yuxuan Wang, Ryan Sun, Zachary R. McCaw, Zhi Yu, Min-Zhi Jiang, Daniel DiCorpo, Sheila M. Gaynor, Rounak Dey, Donna K. Arnett, Emelia J. Benjamin, Joshua C. Bis, John Blangero, Eric Boerwinkle, Donald W. Bowden, Jennifer A. Brody, Brian E. Cade, April P. Carson, Jenna C. Carlson, Nathalie Chami, Yii-Der Ida Chen, Joanne E. Curran, Paul S. de Vries, Myriam Fornage, Nora Franceschini, Barry I. Freedman, Charles Gu, Nancy L. Heard-Costa, Jiang He, Lifang Hou, Yi-Jen Hung, Marguerite R. Irvin, Robert C. Kaplan, Sharon L. R. Kardia, Tanika N. Kelly, Iain R. Konigsberg, Charles L. Kooperberg, Brian G. Kral, Changwei Li, Yun Li, Honghuang Lin, Ching-Ti Liu, Ruth J. F. Loos, Michael C. Mahaney, Lisa W. Martin, Rasika A. Mathias, Braxton D. Mitchell, May E. Montasser, Alanna C. Morrison, Take Naseri, Kari E. North, Nicholette D. Palmer, Patricia A. Peyser, Bruce M. Psaty, Susan Redline, Alexander P. Reiner, Stephen S. Rich, Colleen M. Sitlani, Jennifer A. Smith, Kent D. Taylor, Hemant K. Tiwari, Ramachandran S. Vasan, Satupa'itea Viali, Zhe Wang, Jennifer Wessel, Lisa R. Yanek, Bing Yu, NHLBI Trans-Omics for Precision Medicine Consortium, Josée Dupuis, James B. Meigs, Paul L. Auer, Laura M. Raffield, Alisa K. Manning, Kenneth M. Rice, Jerome I. Rotter, Gina M. Peloso, Pradeep Natarajan, Zilin Li, Zhonghua Liu, Xihong Lin:
A statistical framework for multi-trait rare variant analysis in large-scale whole-genome sequencing studies. Nat. Comput. Sci. 5(2): 125-143 (2025)- [j12]Hongru Du, Yang Zhao, Jianan Zhao, Shaochong Xu
, Xihong Lin, Yiran Chen, Lauren M. Gardner, Hao (Frank) Yang:
Advancing real-time infectious disease forecasting using large language models. Nat. Comput. Sci. 5(6): 467-480 (2025) - [i3]Xiangru Tang, Zhuoyun Yu, Jiapeng Chen, Yan Cui, Daniel Shao, Weixu Wang, Fang Wu, Yuchen Zhuang, Wenqi Shi, Zhi Huang, Arman Cohan, Xihong Lin, Fabian J. Theis, Smita Krishnaswamy, Mark Gerstein:
CellForge: Agentic Design of Virtual Cell Models. CoRR abs/2508.02276 (2025) - 2024
- [c1]Xihong Lin:
Empower an End-to-end Scalable and Interpretable Data Science Ecosystem using Statistics, AI and Domain Science. KDD 2024: 3-4 - [i2]Hongru Du, Jianan Zhao, Yang Zhao, Shaochong Xu, Xihong Lin, Yiran Chen, Lauren M. Gardner, Hao (Frank) Yang:
Advancing Real-time Pandemic Forecasting Using Large Language Models: A COVID-19 Case Study. CoRR abs/2404.06962 (2024) - 2023
- [j11]Hufeng Zhou, Theodore Arapoglou, Xihao Li, Zilin Li, Xiuwen Zheng, Jill Moore, Abhijith Asok, Sushant Kumar, Elizabeth E. Blue, Steven Buyske, Nancy J. Cox, Adam Felsenfeld, Mark Gerstein, Eimear Kenny, Bingshan Li, Tara Cox Matise, Anthony Philippakis, Heidi L. Rehm, Heidi J. Sofia, Grace Snyder, Zhiping Weng, Benjamin M. Neale, Shamil R. Sunyaev, Xihong Lin:
FAVOR: functional annotation of variants online resource and annotator for variation across the human genome. Nucleic Acids Res. 51(D1): 1300-1311 (2023) - 2022
- [j10]Andy Shi, Sheila M. Gaynor, Rounak Dey, Haoyu Zhang, Corbin Quick, Xihong Lin:
COVID-19 Spread Mapper: a multi-resolution, unified framework and open-source tool. Bioinform. 38(9): 2661-2663 (2022) - [j9]Sheila M. Gaynor, Kenneth E. Westerman, Lea L. Ackovic, Xihao Li, Zilin Li, Alisa Manning, Anthony A. Philippakis, Xihong Lin:
STAAR workflow: a cloud-based workflow for scalable and reproducible rare variant analysis. Bioinform. 38(11): 3116-3117 (2022) - [i1]Yu Xie, Xihong Lin, Ju Li, Qian He, Junming Huang:
Caught in the Crossfire: Fears of Chinese-American Scientists. CoRR abs/2209.10642 (2022)
2010 – 2019
- 2019
- [j8]Sheila M. Gaynor, Ryan Sun, Xihong Lin, John Quackenbush:
Identification of differentially expressed gene sets using the Generalized Berk-Jones statistic. Bioinform. 35(22): 4568-4576 (2019) - 2017
- [j7]Xuefeng Wang, Zhenyu Zhang, Nathan Morris, Tianxi Cai, Seunggeun Lee, Chaolong Wang, Timothy W. Yu, Christopher A. Walsh, Xihong Lin:
Rare variant association test in family-based sequencing studies. Briefings Bioinform. 18(6): 954-961 (2017) - [j6]Nezamoddin Nezamoddini-Kachouie, Xihong Lin, Armin Schwartzman:
FDR control of detected regions by multiscale matched filtering. Commun. Stat. Simul. Comput. 46(1): 127-144 (2017) - 2016
- [j5]Jun Chen, Allan C. Just, Joel Schwartz, Lifang Hou, Nadereh Jafari, Zhifu Sun, Jean-Pierre A. Kocher, Andrea A. Baccarelli, Xihong Lin:
CpGFilter: model-based CpG probe filtering with replicates for epigenome-wide association studies. Bioinform. 32(3): 469-471 (2016) - 2013
- [j4]Yen-Tsung Huang, Xihong Lin:
Gene set analysis using variance component tests. BMC Bioinform. 14: 210 (2013)
2000 – 2009
- 2009
- [j3]Michael C. Wu, Lingsong Zhang, Zhaoxi Wang, David Christiani, Xihong Lin:
Sparse linear discriminant analysis for simultaneous testing for the significance of a gene set/pathway and gene selection. Bioinform. 25(9): 1145-1151 (2009) - 2008
- [j2]Dawei Liu, Debashis Ghosh, Xihong Lin:
Estimation and testing for the effect of a genetic pathway on a disease outcome using logistic kernel machine regression via logistic mixed models. BMC Bioinform. 9 (2008) - 2007
- [j1]Jaroslaw Harezlak, Mike Wang, David Christiani, Xihong Lin:
Quantitative quality-assessment techniques to compare fractionation and depletion methods in SELDI-TOF mass spectrometry experiments. Bioinform. 23(18): 2441-2448 (2007)
Coauthor Index
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