- Luonan Chen, Michael K. Ng:
Guest Editorial: Bioinformatics and Computational Systems Biology. IEEE ACM Trans. Comput. Biol. Bioinform. 9(4): 945-946 (2012) - Zhi-Zhong Chen, Lusheng Wang:
Algorithms for Reticulate Networks of Multiple Phylogenetic Trees. IEEE ACM Trans. Comput. Biol. Bioinform. 9(2): 372-384 (2012) - Peng Chen, Limsoon Wong, Jinyan Li:
Detection of Outlier Residues for Improving Interface Prediction in Protein Heterocomplexes. IEEE ACM Trans. Comput. Biol. Bioinform. 9(4): 1155-1165 (2012) - Jianer Chen, Alexander Zelikovsky:
Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications. IEEE ACM Trans. Comput. Biol. Bioinform. 9(4): 1002-1003 (2012) - Yi-Ming Cheng, Srinivasa Murthy Gopal, Sean M. Law, Michael Feig:
Molecular Dynamics Trajectory Compression with a Coarse-Grained Model. IEEE ACM Trans. Comput. Biol. Bioinform. 9(2): 476-486 (2012) - Ickwon Choi, Michael W. Kattan, Brian J. Wells, Changhong Yu:
A Hybrid Approach to Survival Model Building Using Integration of Clinical and Molecular Information in Censored Data. IEEE ACM Trans. Comput. Biol. Bioinform. 9(4): 1091-1105 (2012) - Eugen Czeizler, Andrzej Mizera, Elena Czeizler, Ralph-Johan Back, John E. Eriksson, Ion Petre:
Quantitative Analysis of the Self-Assembly Strategies of Intermediate Filaments from Tetrameric Vimentin. IEEE ACM Trans. Comput. Biol. Bioinform. 9(3): 885-898 (2012) - Eugen Czeizler, Vladimir Rogojin, Ion Petre:
The Phosphorylation of the Heat Shock Factor as a Modulator for the Heat Shock Response. IEEE ACM Trans. Comput. Biol. Bioinform. 9(5): 1326-1337 (2012) - Daniel DeBlasio, Jocelyne Bruand, Shaojie Zhang:
A Memory Efficient Method for Structure-Based RNA Multiple Alignment. IEEE ACM Trans. Comput. Biol. Bioinform. 9(1): 1-11 (2012) - James H. Degnan, Noah A. Rosenberg, Tanja Stadler:
A Characterization of the Set of Species Trees that Produce Anomalous Ranked Gene Trees. IEEE ACM Trans. Comput. Biol. Bioinform. 9(6): 1558-1568 (2012) - Lorenzo Dematté:
Smoldyn on Graphics Processing Units: Massively Parallel Brownian Dynamics Simulations. IEEE ACM Trans. Comput. Biol. Bioinform. 9(3): 655-667 (2012) - Jean-Philippe Doyon, Sylvie Hamel, Cédric Chauve:
An Efficient Method for Exploring the Space of Gene Tree/Species Tree Reconciliations in a Probabilistic Framework. IEEE ACM Trans. Comput. Biol. Bioinform. 9(1): 26-39 (2012) - Zachary Dwight, Robert Palais, Carl T. Wittwer:
uAnalyze: Web-Based High-Resolution DNA Melting Analysis with Comparison to Thermodynamic Predictions. IEEE ACM Trans. Comput. Biol. Bioinform. 9(6): 1805-1811 (2012) - Ola ElBakry, M. Omair Ahmad, M. N. S. Swamy:
Identification of Differentially Expressed Genes for Time-Course Microarray Data Based on Modified RM ANOVA. IEEE ACM Trans. Comput. Biol. Bioinform. 9(2): 451-466 (2012) - François Fages, Sylvain Soliman:
Guest Editors' Introduction to the Special Section on Computational Methods in Systems Biology. IEEE ACM Trans. Comput. Biol. Bioinform. 9(5): 1314-1315 (2012) - Denise Fagundes-Lima, Gerald Weber:
Comment on "SCS: Signal, Context, and Structure Features for Genome-Wide Human Promoter Recognition". IEEE ACM Trans. Comput. Biol. Bioinform. 9(3): 940-941 (2012) - Claudio Felicioli, Roberto Marangoni:
BpMatch: An Efficient Algorithm for a Segmental Analysis of Genomic Sequences. IEEE ACM Trans. Comput. Biol. Bioinform. 9(4): 1120-1127 (2012) - Zeny Z. Feng, Xiaojian Yang, Sanjeena Subedi, Paul D. McNicholas:
The LASSO and Sparse Least Squares Regression Methods for SNP Selection in Predicting Quantitative Traits. IEEE ACM Trans. Comput. Biol. Bioinform. 9(2): 629-636 (2012) - Nicoletta De Francesco, Giuseppe Lettieri, Luca Martini:
Efficient Genotype Elimination via Adaptive Allele Consolidation. IEEE ACM Trans. Comput. Biol. Bioinform. 9(4): 1180-1189 (2012) - Alvaro J. González, Li Liao, Cathy H. Wu:
Predicting Ligand Binding Residues and Functional Sites Using Multipositional Correlations with Graph Theoretic Clustering and Kernel CCA. IEEE ACM Trans. Comput. Biol. Bioinform. 9(4): 992-1001 (2012) - Elena Grassi, Federico Di Gregorio, Ivan Molineris:
KungFQ: A Simple and Powerful Approach to Compress fastq Files. IEEE ACM Trans. Comput. Biol. Bioinform. 9(6): 1837-1842 (2012) - Dániel Györffy, Péter Závodszky, András Szilágyi:
"Pull Moves" for Rectangular Lattice Polymer Models Are Not Fully Reversible. IEEE ACM Trans. Comput. Biol. Bioinform. 9(6): 1847-1849 (2012) - Blaise Hanczar, Avner Bar-Hen:
A New Measure of Classifier Performance for Gene Expression Data. IEEE ACM Trans. Comput. Biol. Bioinform. 9(5): 1379-1386 (2012) - Stephanus Daniel Handoko, Xuchang Ouyang, Chinh Tran To Su, Chee Keong Kwoh, Yew-Soon Ong:
QuickVina: Accelerating AutoDock Vina Using Gradient-Based Heuristics for Global Optimization. IEEE ACM Trans. Comput. Biol. Bioinform. 9(5): 1266-1272 (2012) - Stephanus Daniel Handoko, Xuchang Ouyang, Chinh Tran To Su, Chee Keong Kwoh, Yew-Soon Ong:
Erratum to "QuickVina: Accelerating AutoDock Vina Using Gradient-Based Heuristics for Global Optimization". IEEE ACM Trans. Comput. Biol. Bioinform. 9(6): 1853 (2012) - Seyedsasan Hashemikhabir, Eyüp Serdar Ayaz, Yusuf Kavurucu, Tolga Can, Tamer Kahveci:
Large-Scale Signaling Network Reconstruction. IEEE ACM Trans. Comput. Biol. Bioinform. 9(6): 1696-1708 (2012) - John C. Hawkins, Hongbo Zhu, Joan Teyra, M. Teresa Pisabarro:
Reduced False Positives in PDZ Binding Prediction Using Sequence and Structural Descriptors. IEEE ACM Trans. Comput. Biol. Bioinform. 9(5): 1492-1503 (2012) - Pablo H. Hennings-Yeomans, Gregory F. Cooper:
Improving the Prediction of Clinical Outcomes from Genomic Data Using Multiresolution Analysis. IEEE ACM Trans. Comput. Biol. Bioinform. 9(5): 1442-1450 (2012) - Luqman Hodgkinson, Richard M. Karp:
Algorithms to Detect Multiprotein Modularity Conserved during Evolution. IEEE ACM Trans. Comput. Biol. Bioinform. 9(4): 1046-1058 (2012) - Martin Hopfensitz, Christoph Müssel, Christian Wawra, Markus Maucher, Michael Kühl, Heiko Neumann, Hans A. Kestler:
Multiscale Binarization of Gene Expression Data for Reconstructing Boolean Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 9(2): 487-498 (2012)