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ORCIDCédric Chauve
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- affiliation: Simon Fraser University, Department of Mathematics
- affiliation: Université du Québec à Montréal, Computer Science Department
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2020 – today
- 2024
[j55]Aniket C. Mane, Haley Sanderson, Aaron P. White, Rahat Zaheer, Robert Beiko, Cédric Chauve:
Plaseval: a framework for comparing and evaluating plasmid detection tools. BMC Bioinform. 25(1): 365 (2024)- [i20]Cédric Chauve, Caroline Colijn, Louxin Zhang:
A Vector Representation for Phylogenetic Trees. CoRR abs/2405.07110 (2024) - 2023
- [j54]Aniket C. Mane, Mahsa Faizrahnemoon, Tomás Vinar, Brona Brejová
, Cédric Chauve:
PlasBin-flow: a flow-based MILP algorithm for plasmid contigs binning. Bioinform. 39(Supplement-1): 288-296 (2023) - 2022
- [c42]Aniket C. Mane, Mahsa Faizrahnemoon, Cédric Chauve:
A Mixed Integer Linear Programming Algorithm for Plasmid Binning. RECOMB-CG 2022: 279-292 - 2021
- [j53]Daniel Doerr, Cédric Chauve:
Small parsimony for natural genomes in the DCJ-indel model. J. Bioinform. Comput. Biol. 19(6): 2140009:1-2140009:15 (2021) - [c41]Cédric Chauve, Marni Mishna, France Paquet-Nadeau:
Refined Upper Bounds on the Size of the Condensed Neighbourhood of Sequences. Stringology 2021: 30-40 - [i19]Daniel Doerr, Cédric Chauve:
Small Parsimony for Natural Genomes in the DCJ-Indel Model. CoRR abs/2108.04297 (2021) - 2020
- [j52]Aniket C. Mane, Manuel Lafond, Pedro Cipriano Feijão, Cédric Chauve:
The distance and median problems in the single-cut-or-join model with single-gene duplications. Algorithms Mol. Biol. 15(1): 8 (2020) - [j51]Haitao Jiang, Hong Liu, Cédric Chauve, Binhai Zhu:
Breakpoint distance and PQ-trees. Inf. Comput. 275: 104584 (2020) - [c40]Mohsen Katebi, Pedro Feijão, Julius Booth, Mehrdad Mansouri, Sean La, Alex Sweeten, Reza Miraskarshahi, Matthew Nguyen, Johnathan Wong, William Hsiao, Cédric Chauve, Leonid Chindelevitch:
PathOGiST: A Novel Method for Clustering Pathogen Isolates by Combining Multiple Genotyping Signals. AlCoB 2020: 108-124 - [c39]Yoann Dufresne, Chen Sun, Pierre Marijon, Dominique Lavenier, Cédric Chauve, Rayan Chikhi:
A Graph-Theoretic Barcode Ordering Model for Linked-Reads. WABI 2020: 11:1-11:17
2010 – 2019
- 2019
- [j50]Baraa Orabi, Emre Erhan, Brian McConeghy, Stanislav V. Volik, Stephane Le Bihan, Robert Bell, Colin C. Collins, Cédric Chauve, Faraz Hach:
Alignment-free clustering of UMI tagged DNA molecules. Bioinform. 35(11): 1829-1836 (2019) - [j49]Robert Müller, Cédric Chauve:
HyAsP, a greedy tool for plasmids identification. Bioinform. 35(21): 4436-4439 (2019) - [j48]Guo Liang Gan, Elijah Willie, Cédric Chauve, Leonid Chindelevitch:
Deconvoluting the diversity of within-host pathogen strains in a multi-locus sequence typing framework. BMC Bioinform. 20-S(20): 637 (2019) - [j47]Nina Luhmann, Manuel Lafond, Annelyse Thévenin, Aïda Ouangraoua, Roland Wittler, Cédric Chauve:
The SCJ Small Parsimony Problem for Weighted Gene Adjacencies. IEEE ACM Trans. Comput. Biol. Bioinform. 16(4): 1364-1373 (2019) - [c38]Hua-Ting Yao, Cédric Chauve, Mireille Régnier, Yann Ponty:
Exponentially Few RNA Structures are Designable. BCB 2019: 289-298 - [i18]Cédric Chauve, Yann Ponty, Michael Wallner:
Counting and sampling gene family evolutionary histories in the duplication-loss and duplication-loss-transfer models. CoRR abs/1905.04971 (2019) - 2018
- [j46]Markus Lux, Ryan Remy Brinkman, Cédric Chauve, Adam Laing, Anna Lorenc, Lucie Abeler-Dörner, Barbara Hammer:
flowLearn: fast and precise identification and quality checking of cell populations in flow cytometry. Bioinform. 34(13): 2245-2253 (2018) - [j45]Yoann Anselmetti, Wandrille Duchemin, Eric Tannier, Cédric Chauve, Sèverine Bérard:
Phylogenetic signal from rearrangements in 18 Anopheles species by joint scaffolding extant and ancestral genomes. BMC Genom. 19(S2) (2018) - [j44]Cédric Chauve, Julien Courtiel, Yann Ponty:
Counting, Generating, Analyzing and Sampling Tree Alignments. Int. J. Found. Comput. Sci. 29(5): 741-767 (2018) - [j43]Manuel Lafond, Cédric Chauve, Nadia El-Mabrouk, Aïda Ouangraoua:
Gene Tree Construction and Correction Using SuperTree and Reconciliation. IEEE ACM Trans. Comput. Biol. Bioinform. 15(5): 1560-1570 (2018) - [j42]Nina Luhmann, Cédric Chauve, Jens Stoye, Roland Wittler:
Scaffolding of Ancient Contigs and Ancestral Reconstruction in a Phylogenetic Framework. IEEE ACM Trans. Comput. Biol. Bioinform. 15(6): 2094-2100 (2018) - [c37]Aniket C. Mane, Manuel Lafond, Pedro Feijão, Cédric Chauve:
The Rooted SCJ Median with Single Gene Duplications. RECOMB-CG 2018: 28-48 - [c36]Cédric Chauve, Jingxue Feng, Liangliang Wang:
Detecting Introgression in Anopheles Mosquito Genomes Using a Reconciliation-Based Approach. RECOMB-CG 2018: 163-178 - [c35]Mehrdad Mansouri, Julian Booth, Margaryta Vityaz, Cédric Chauve, Leonid Chindelevitch:
PRINCE: Accurate Approximation of the Copy Number of Tandem Repeats. WABI 2018: 20:1-20:13 - 2017
- [j41]Daniel Doerr, Metin Balaban, Pedro Feijão, Cédric Chauve:
The gene family-free median of three. Algorithms Mol. Biol. 12(1): 14:1-14:14 (2017) - [j40]Benedikt Löwes, Cédric Chauve, Yann Ponty, Robert Giegerich:
The BRaliBase dent - a tale of benchmark design and interpretation. Briefings Bioinform. 18(2): 306-311 (2017) - [j39]Sean La, Ehsan Haghshenas, Cédric Chauve:
LRCstats, a tool for evaluating long reads correction methods. Bioinform. 33(22): 3652-3654 (2017) - [j38]Ashok Rajaraman, João Paulo Pereira Zanetti, Ján Manuch, Cédric Chauve:
Algorithms and Complexity Results for Genome Mapping Problems. IEEE ACM Trans. Comput. Biol. Bioinform. 14(2): 418-430 (2017) - [c34]Cédric Chauve, Éric Fusy, Jérémie O. Lumbroso:
An Exact Enumeration of Distance-Hereditary Graphs. ANALCO 2017: 31-45 - [c33]Pedro Feijão, Aniket C. Mane, Cédric Chauve:
A Tractable Variant of the Single Cut or Join Distance with Duplicated Genes. RECOMB-CG 2017: 14-30 - [c32]Cédric Chauve, Mark Jones, Manuel Lafond, Céline Scornavacca, Mathias Weller:
Constructing a Consensus Phylogeny from a Leaf-Removal Distance (Extended Abstract). SPIRE 2017: 129-143 - [i17]Cédric Chauve, Mark Jones, Manuel Lafond, Céline Scornavacca, Mathias Weller:
Constructing a Consensus Phylogeny from a Leaf-Removal Distance. CoRR abs/1705.05295 (2017) - 2016
- [j37]Edwin Jacox, Cédric Chauve, Gergely J. Szöllosi, Yann Ponty, Céline Scornavacca:
ecceTERA: comprehensive gene tree-species tree reconciliation using parsimony. Bioinform. 32(13): 2056-2058 (2016) - [j36]Ehsan Haghshenas, Faraz Hach, Süleyman Cenk Sahinalp, Cédric Chauve:
CoLoRMap: Correcting Long Reads by Mapping short reads. Bioinform. 32(17): 545-551 (2016) - [c31]Cédric Chauve, Julien Courtiel, Yann Ponty:
Counting, Generating and Sampling Tree Alignments. AlCoB 2016: 53-64 - [c30]Nina Luhmann, Annelyse Thévenin, Aïda Ouangraoua, Roland Wittler, Cédric Chauve:
The SCJ Small Parsimony Problem for Weighted Gene Adjacencies. ISBRA 2016: 200-210 - [c29]Daniel Doerr, Pedro Feijão, Metin Balaban, Cédric Chauve:
The Gene Family-Free Median of Three. WABI 2016: 102-120 - [i16]Nina Luhmann, Annelyse Thévenin, Aïda Ouangraoua, Roland Wittler, Cédric Chauve:
The SCJ small parsimony problem for weighted gene adjacencies (Extended version). CoRR abs/1603.08819 (2016) - [i15]Daniel Doerr, Pedro Feijão, Metin Balaban, Cédric Chauve:
The gene family-free median of three. CoRR abs/1606.05910 (2016) - [i14]Cédric Chauve, Éric Fusy, Jérémie O. Lumbroso:
An Exact Enumeration of Distance-Hereditary Graphs. CoRR abs/1608.01464 (2016) - [i13]Manuel Lafond, Cédric Chauve, Nadia El-Mabrouk, Aïda Ouangraoua:
Gene Tree Construction and Correction using SuperTree and Reconciliation. CoRR abs/1610.05068 (2016) - 2015
- [j35]Cédric Chauve, Yann Ponty, João Paulo Pereira Zanetti:
Evolution of genes neighborhood within reconciled phylogenies: an ensemble approach. BMC Bioinform. 16(S19): S6 (2015) - [j34]Laetitia Bourgeade, Cédric Chauve, Julien Allali:
Chaining Sequence/Structure Seeds for Computing RNA Similarity. J. Comput. Biol. 22(3): 205-217 (2015) - [c28]Ashok Rajaraman, Cédric Chauve, Yann Ponty:
Assessing the Robustness of Parsimonious Predictions for Gene Neighborhoods from Reconciled Phylogenies: Supplementary Material. ISBRA 2015: 260-271 - [c27]Andrew W. McPherson, Andrew Roth, Cédric Chauve, Süleyman Cenk Sahinalp:
Joint Inference of Genome Structure and Content in Heterogeneous Tumor Samples. RECOMB 2015: 256-258 - [c26]Julien Allali, Cédric Chauve, Laetitia Bourgeade:
Chaining Fragments in Sequences: to Sweep or Not (Extended Abstract). SPIRE 2015: 116-123 - [i12]Andrew W. McPherson, Andrew Roth, Gavin Ha, Sohrab P. Shah, Cédric Chauve, Süleyman Cenk Sahinalp:
Joint Inference of Genome Structure and Content in Heterogeneous Tumour Samples. CoRR abs/1504.03080 (2015) - [i11]Cédric Chauve, Julien Courtiel, Yann Ponty:
An Unambiguous And Complete Dynamic Programming Algorithm For Tree Alignment. CoRR abs/1505.05983 (2015) - [i10]Julien Allali, Laetitia Bourgeade, Cédric Chauve:
Chaining fragments in sequences: to sweep or not. CoRR abs/1506.07458 (2015) - 2014
- [j33]Manuel Lafond, Cédric Chauve, Riccardo Dondi, Nadia El-Mabrouk:
Polytomy refinement for the correction of dubious duplications in gene trees. Bioinform. 30(17): 519-526 (2014) - [c25]Laetitia Bourgeade, Julien Allali, Cédric Chauve:
Chaining Sequence/Structure Seeds for Computing RNA Similarity. CMSR@ECCB 2014: 1-12 - [c24]Cédric Chauve, Yann Ponty, João Paulo Pereira Zanetti:
Evolution of Genes Neighborhood within Reconciled Phylogenies: An Ensemble Approach. BSB 2014: 49-56 - [c23]Nina Luhmann, Cédric Chauve, Jens Stoye, Roland Wittler:
Scaffolding of Ancient Contigs and Ancestral Reconstruction in a Phylogenetic Framework. BSB 2014: 135-143 - 2013
- [j32]Ashok Rajaraman, Eric Tannier, Cédric Chauve:
FPSAC: fast phylogenetic scaffolding of ancient contigs. Bioinform. 29(23): 2987-2994 (2013) - [c22]Cédric Chauve, Murray Patterson, Ashok Rajaraman:
Hypergraph Covering Problems Motivated by Genome Assembly Questions. IWOCA 2013: 428-432 - [p2]Cédric Chauve, Nadia El-Mabrouk, Laurent Guéguen, Magali Semeria, Eric Tannier:
Duplication, Rearrangement and Reconciliation: A Follow-Up 13 Years Later. Models and Algorithms for Genome Evolution 2013: 47-62 - [p1]Marília D. V. Braga, Cédric Chauve, Daniel Doerr, Katharina Jahn, Jens Stoye, Annelyse Thévenin, Roland Wittler:
The Potential of Family-Free Genome Comparison. Models and Algorithms for Genome Evolution 2013: 287-307 - [e1]Cédric Chauve, Nadia El-Mabrouk, Eric Tannier:
Models and Algorithms for Genome Evolution. Springer 2013, ISBN 978-1-4471-5297-2 [contents] - [i9]Ján Manuch, Murray Patterson, Roland Wittler, Cédric Chauve, Eric Tannier:
Linearization of ancestral multichromosomal genomes. CTW 2013: 169-173 - [i8]Cédric Chauve, Murray Patterson, Ashok Rajaraman:
Hypergraph covering problems motivated by genome assembly questions. CoRR abs/1306.4353 (2013) - 2012
- [j31]Julien Allali, Cédric Saule, Cédric Chauve, Yves D'Aubenton-Carafa, Alain Denise, Christine Drevet, Pascal Ferraro, Daniel Gautheret, Claire Herrbach, Fabrice Leclerc, Antoine de Monte, Aïda Ouangraoua, Marie-France Sagot, Michel Termier, Claude Thermes, Hélène Touzet:
BRASERO: A Resource for Benchmarking RNA Secondary Structure Comparison Algorithms. Adv. Bioinformatics 2012: 893048:1-893048:5 (2012) - [j30]Bradley R. Jones, Ashok Rajaraman, Eric Tannier, Cédric Chauve:
ANGES: reconstructing ANcestral GEnomeS maps. Bioinform. 28(18): 2388-2390 (2012) - [j29]Ján Manuch, Murray Patterson, Roland Wittler, Cédric Chauve, Eric Tannier:
Linearization of ancestral multichromosomal genomes. BMC Bioinform. 13(S-19): S11 (2012) - [j28]Ján Manuch, Murray Patterson, Cédric Chauve:
Hardness results on the gapped consecutive-ones property problem. Discret. Appl. Math. 160(18): 2760-2768 (2012) - [j27]Mehrnoush Malekesmaeili, Cédric Chauve, Tamon Stephen:
A tight bound on the length of odd cycles in the incompatibility graph of a non-C1P matrix. Inf. Process. Lett. 112(20): 799-803 (2012) - [j26]Julien Allali, Cédric Chauve, Pascal Ferraro, Anne-Laure Gaillard:
Efficient chaining of seeds in ordered trees. J. Discrete Algorithms 14: 107-118 (2012) - [j25]Jean-Philippe Doyon, Sylvie Hamel, Cédric Chauve:
An Efficient Method for Exploring the Space of Gene Tree/Species Tree Reconciliations in a Probabilistic Framework. IEEE ACM Trans. Comput. Biol. Bioinform. 9(1): 26-39 (2012) - [i7]Mathilde Bouvel, Cédric Chauve, Marni Mishna, Dominique Rossin:
Average-case analysis of perfect sorting by reversals (Journal Version). CoRR abs/1201.0940 (2012) - 2011
- [j24]Haris Gavranovic, Cédric Chauve, Jérôme Salse, Eric Tannier:
Mapping ancestral genomes with massive gene loss: A matrix sandwich problem. Bioinform. 27(13): 257-265 (2011) - [j23]Aïda Ouangraoua, Eric Tannier, Cédric Chauve:
Reconstructing the architecture of the ancestral amniote genome. Bioinform. 27(19): 2664-2671 (2011) - [j22]Roland Wittler, Cédric Chauve:
Consistency-based detection of potential tumor-specific deletions in matched normal/tumor genomes. BMC Bioinform. 12(S-9): S21 (2011) - [j21]Mathilde Bouvel, Cédric Chauve, Marni Mishna, Dominique Rossin:
Average-Case Analysis of Perfect Sorting by Reversals. Discret. Math. Algorithms Appl. 3(3): 369-392 (2011) - [j20]Aïda Ouangraoua, Krister M. Swenson, Cédric Chauve:
A 2-Approximation for the Minimum Duplication Speciation Problem. J. Comput. Biol. 18(9): 1041-1053 (2011) - [j19]Aïda Ouangraoua, Valentin Guignon, Sylvie Hamel, Cédric Chauve:
A new algorithm for aligning nested arc-annotated sequences under arbitrary weight schemes. Theor. Comput. Sci. 412(8-10): 753-764 (2011) - [c21]Cédric Chauve, Ján Manuch, Murray Patterson, Roland Wittler:
Tractability Results for the Consecutive-Ones Property with Multiplicity. CPM 2011: 90-103 - [i6]Mehrnoush Malekesmaeili, Cédric Chauve, Tamon Stephen:
A tight bound on the length of odd cycles in the incompatibility graph of a non-C1P matrix. CoRR abs/1109.0562 (2011) - [i5]Ahmad Mahmoody-Ghaidary, Cédric Chauve, Ladislav Stacho:
Tractability results for the Double-Cut-and-Join circular median problem. CoRR abs/1111.5872 (2011) - 2010
- [j18]Cédric Chauve, Haris Gavranovic, Aïda Ouangraoua, Eric Tannier:
Yeast Ancestral Genome Reconstructions: The Possibilities of Computational Methods II. J. Comput. Biol. 17(9): 1097-1112 (2010) - [j17]Cédric Chauve, Utz-Uwe Haus, Tamon Stephen, Vivija P. You:
Minimal Conflicting Sets for the Consecutive Ones Property in Ancestral Genome Reconstruction. J. Comput. Biol. 17(9): 1167-1181 (2010) - [c20]Haitao Jiang, Cédric Chauve, Binhai Zhu:
Breakpoint Distance and PQ-Trees. CPM 2010: 112-124 - [c19]Julien Allali, Cédric Chauve, Pascal Ferraro, Anne-Laure Gaillard:
Efficient Chaining of Seeds in Ordered Trees. IWOCA 2010: 260-273 - [c18]Aïda Ouangraoua, Krister M. Swenson, Cédric Chauve:
An Approximation Algorithm for Computing a Parsimonious First Speciation in the Gene Duplication Model. RECOMB-CG 2010: 290-301
2000 – 2009
- 2009
- [j16]Cédric Chauve, Ján Manuch, Murray Patterson:
On the Gapped Consecutive-Ones Property. Electron. Notes Discret. Math. 34: 121-125 (2009) - [j15]Sèverine Bérard, Annie Chateau, Cédric Chauve, Christophe Paul, Eric Tannier:
Computation of Perfect DCJ Rearrangement Scenarios with Linear and Circular Chromosomes. J. Comput. Biol. 16(10): 1287-1309 (2009) - [j14]Jean-Philippe Doyon, Cédric Chauve, Sylvie Hamel:
Space of Gene/Species Trees Reconciliations and Parsimonious Models. J. Comput. Biol. 16(10): 1399-1418 (2009) - [c17]Mathilde Bouvel, Cédric Chauve, Marni Mishna, Dominique Rossin:
Average-Case Analysis of Perfect Sorting by Reversals. CPM 2009: 314-325 - [c16]Aïda Ouangraoua, Frédéric Boyer, Andrew W. McPherson, Eric Tannier, Cédric Chauve:
Prediction of Contiguous Regions in the Amniote Ancestral Genome. ISBRA 2009: 173-185 - [c15]Cédric Chauve, Nadia El-Mabrouk:
New Perspectives on Gene Family Evolution: Losses in Reconciliation and a Link with Supertrees. RECOMB 2009: 46-58 - [c14]Cédric Chauve, Utz-Uwe Haus, Tamon Stephen, Vivija P. You:
Minimal Conflicting Sets for the Consecutive Ones Property in Ancestral Genome Reconstruction. RECOMB-CG 2009: 48-58 - [i4]Mathilde Bouvel, Cédric Chauve, Marni Mishna, Dominique Rossin:
Average-case analysis of perfect sorting by reversals. CoRR abs/0901.2847 (2009) - [i3]Cédric Chauve, Aïda Ouangraoua:
A 3-approximation algorithm for computing a parsimonious first speciation in the gene duplication model. CoRR abs/0904.1645 (2009) - [i2]Cédric Chauve, Ján Manuch, Murray Patterson:
Hardness Results for the Gapped Consecutive-Ones Property. CoRR abs/0912.0309 (2009) - [i1]Cédric Chauve, Utz-Uwe Haus, Tamon Stephen, Vivija P. You:
Minimal Conflicting Sets for the Consecutive Ones Property in ancestral genome reconstruction. CoRR abs/0912.4196 (2009) - 2008
- [j13]Sèverine Bérard, Cédric Chauve, Christophe Paul:
A more efficient algorithm for perfect sorting by reversals. Inf. Process. Lett. 106(3): 90-95 (2008) - [j12]Cédric Chauve, Jean-Philippe Doyon, Nadia El-Mabrouk:
Gene Family Evolution by Duplication, Speciation, and Loss. J. Comput. Biol. 15(8): 1043-1062 (2008) - [j11]Cédric Chauve, Eric Tannier:
A Methodological Framework for the Reconstruction of Contiguous Regions of Ancestral Genomes and Its Application to Mammalian Genomes. PLoS Comput. Biol. 4(11) (2008) - [j10]Anne Bergeron, Cédric Chauve, Fabien de Montgolfier, Mathieu Raffinot:
Computing Common Intervals of K Permutations, with Applications to Modular Decomposition of Graphs. SIAM J. Discret. Math. 22(3): 1022-1039 (2008) - [c13]Jean-Philippe Doyon, Cédric Chauve, Sylvie Hamel:
Algorithms for Exploring the Space of Gene Tree/Species Tree Reconciliations. RECOMB-CG 2008: 1-13 - [c12]Sèverine Bérard, Annie Chateau, Cédric Chauve, Christophe Paul, Eric Tannier:
Perfect DCJ Rearrangement. RECOMB-CG 2008: 158-169 - 2007
- [j9]Guylaine Poisson, Cédric Chauve, Xin Chen, Anne Bergeron:
FragAnchor: A Large-Scale Predictor of Glycosylphosphatidylinositol Anchors in Eukaryote Protein Sequences by Qualitative Scoring. Genom. Proteom. Bioinform. 5(2): 121-130 (2007) - [j8]Sèverine Bérard, Anne Bergeron, Cédric Chauve, Christophe Paul:
Perfect Sorting by Reversals Is Not Always Difficult. IEEE ACM Trans. Comput. Biol. Bioinform. 4(1): 4-16 (2007) - [j7]Guillaume Blin, Cédric Chauve, Guillaume Fertin, Romeo Rizzi, Stéphane Vialette:
Comparing Genomes with Duplications: A Computational Complexity Point of View. IEEE ACM Trans. Comput. Biol. Bioinform. 4(4): 523-534 (2007) - [c11]Mahdi Belcaid, Anne Bergeron, Annie Chateau, Cédric Chauve, Yannick Gingras, Guylaine Poisson, M. Vendette:
Exploring Genome Rearrangements using Virtual Hybridization. APBC 2007: 205-214 - [c10]Cédric Chauve, Jean-Philippe Doyon, Nadia El-Mabrouk:
Inferring a Duplication, Speciation and Loss History from a Gene Tree (Extended Abstract). RECOMB-CG 2007: 45-57 - 2006
- [c9]Cédric Chauve, Guillaume Fertin, Romeo Rizzi, Stéphane Vialette:
Genomes Containing Duplicates Are Hard to Compare. International Conference on Computational Science (2) 2006: 783-790 - [c8]Guillaume Blin, Annie Chateau, Cédric Chauve, Yannick Gingras:
Inferring Positional Homologs with Common Intervals of Sequences. Comparative Genomics 2006: 24-38 - 2005
- [c7]Anne Bergeron, Cédric Chauve, Fabien de Montgolfier, Mathieu Raffinot:
Computing Common Intervals of K Permutations, with Applications to Modular Decomposition of Graphs. ESA 2005: 779-790 - [c6]Guillaume Blin, Cédric Chauve, Guillaume Fertin:
Genes Order and Phylogenetic Reconstruction: Application to gamma-Proteobacteria. Comparative Genomics 2005: 11-20 - [c5]Valentin Guignon, Cédric Chauve, Sylvie Hamel:
An Edit Distance Between RNA Stem-Loops. SPIRE 2005: 335-347 - [c4]Sèverine Bérard, Anne Bergeron, Cédric Chauve, Christophe Paul:
Perfect Sorting by Reversals Is Not Always Difficult. WABI 2005: 228-238 - 2004
- [j6]Cédric Chauve, Guillaume Fertin:
On maximal instances for the original syntenic distance. Theor. Comput. Sci. 326(1-3): 29-43 (2004) - [c3]Sèverine Bérard, Anne Bergeron, Cédric Chauve:
Conservation of Combinatorial Structures in Evolution Scenarios. Comparative Genomics 2004: 1-14 - [c2]Anne Bergeron, Mathieu Blanchette, Annie Chateau, Cédric Chauve:
Reconstructing Ancestral Gene Orders Using Conserved Intervals. WABI 2004: 14-25 - 2003
- [j5]