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ORCID3rd ISBRA 2007: Atlanta, GA, USA
- Ion I. Mandoiu
, Alexander Zelikovsky:
Bioinformatics Research and Applications, Third International Symposium, ISBRA 2007, Atlanta, GA, USA, May 7-10, 2007, Proceedings. Lecture Notes in Computer Science 4463, Springer 2007, ISBN 978-3-540-72030-0 - Xubo Fei, Shiyong Lu, Horia F. Pop, Lily R. Liang:
GFBA: A Biclustering Algorithm for Discovering Value-Coherent Biclusters. 1-12 - Fang-Xiang Wu:
Significance Analysis of Time-Course Gene Expression Profiles. 13-24 - Juntao Li, Jianhua Liu, Karuturi R. Krishna Murthy:
Data-Driven Smoothness Enhanced Variance Ratio Test to Unearth Responsive Genes in 0-Time Normalized Time-Course Microarray Data. 25-36 - Srinath Sridhar, Fumei Lam, Guy E. Blelloch, R. Ravi, Russell Schwartz:
Efficiently Finding the Most Parsimonious Phylogenetic Tree Via Linear Programming. 37-48 - Róbert Busa-Fekete, András Kocsor, Csaba Bagyinka:
A Multi-Stack Based Phylogenetic Tree Building Method. 49-60 - Guohua Jin, Luay Nakhleh, Sagi Snir, Tamir Tuller:
A New Linear-Time Heuristic Algorithm for Computing the Parsimony Score of Phylogenetic Networks: Theoretical Bounds and Empirical Performance. 61-72 - Qihua Tan, Jesper Dahlgaard, Basem M. Abdallah, Werner Vach, Moustapha Kassem, Torben Arvid Kruse:
A Bootstrap Correspondence Analysis for Factorial Microarray Experiments with Replications. 73-84 - Roy Varshavsky, David Horn, Michal Linial:
Clustering Algorithms Optimizer: A Framework for Large Datasets. 85-96 - Jahangheer S. Shaik, Mohammed Yeasin:
Ranking Function Based on Higher Order Statistics (RF-HOS) for Two-Sample Microarray Experiments. 97-108 - Patricia Buendia, Giri Narasimhan:
Searching for Recombinant Donors in a Phylogenetic Network of Serial Samples. 109-120 - Arvind Gupta, Ján Manuch, Ladislav Stacho, Xiaohong Zhao:
Algorithm for Haplotype Inferring Via Galled-Tree Networks with Simple Galls. 121-132 - Frederick Cohan, Danny Krizanc, Yun Lu:
Estimating Bacterial Diversity from Environmental DNA: A Maximum Likelihood Approach. 133-144 - Ming Li:
Invited Talk: Modern Homology Search. 145 - Pramod K. Gupta, Ryo Yoshida, Seiya Imoto, Rui Yamaguchi, Satoru Miyano:
Statistical Absolute Evaluation of Gene Ontology Terms with Gene Expression Data. 146-157 - Italo Zoppis, Daniele Merico, Marco Antoniotti, Bud Mishra, Giancarlo Mauri:
Discovering Relations Among GO-Annotated Clusters by Graph Kernel Methods. 158-169 - George Lee, Carlos Rodriguez, Anant Madabhushi:
An Empirical Comparison of Dimensionality Reduction Methods for Classifying Gene and Protein Expression Datasets. 170-181 - Robert J. Calin-Jageman, Chao Xie, Yi Pan, Art Vandenberg, Paul S. Katz:
NEURONgrid: A Toolkit for Generating Parameter-Space Maps Using NEURON in a Grid Environment. 182-191 - Leonid Zaslavsky, Yiming Bao, Tatiana A. Tatusova:
An Adaptive Resolution Tree Visualization of Large Influenza Virus Sequence Datasets. 192-202 - Gordana Derado, F. DuBois Bowman, Rajan Patel, Mary Newell, Brani Vidakovic:
Wavelet Image Interpolation (WII): A Wavelet-Based Approach to Enhancement of Digital Mammography Images. 203-214 - Yanchao Wang, Rajshekhar Sunderraman, Piyaphol Phoungphol:
High Level Programming Environment System for Protein Structure Data. 215-226 - Kung-Hua Chang, Yong Kyun Kwon, Douglas Stott Parker Jr.:
Finding Minimal Sets of Informative Genes in Microarray Data. 227-236 - Li Chen, Dmitry B. Goldgof, Lawrence O. Hall, Steven Eschrich:
Noise-Based Feature Perturbation as a Selection Method for Microarray Data. 237-247 - Igor Trajkovski, Nada Lavrac:
Efficient Generation of Biologically Relevant Enriched Gene Sets. 248-259 - Sudha Balla, Sanguthevar Rajasekaran:
Space and Time Efficient Algorithms to Discover Endogenous RNAi Patterns in Complete Genome Data. 260-269 - Scott F. Smith:
A Fast Approximate Covariance-Model-Based Database Search Method for Non-coding RNA. 270-281 - Raja Loganantharaj:
Extensions of Naive Bayes and Their Applications to Bioinformatics. 282-292 - Marília D. V. Braga, Marie-France Sagot, Céline Scornavacca, Eric Tannier:
The Solution Space of Sorting by Reversals. 293-304 - Matthias Bernt, Daniel Merkle, Martin Middendorf:
A Fast and Exact Algorithm for the Perfect Reversal Median Problem. 305-316 - Lenwood S. Heath, Amrita Pati:
Genomic Signatures from DNA Word Graphs. 317-328 - Erliang Zeng, Giri Narasimhan:
Enhancing Motif Refinement by Incorporating Comparative Genomics Data. 329-337 - Hyunmin Kim, Katherina J. Kechris, Lawrence Hunter:
Mining Discriminative Distance Context of Transcription Factor Binding Sites on ChIP Enriched Regions. 338-349 - Allison N. Tegge, Sandra L. Rodriguez-Zas, Jonathan V. Sweedler, Bruce R. Southey:
Enhanced Prediction of Cleavage in Bovine Precursor Sequences. 350-360 - Mary Qu Yang, Laura Elnitski:
Invited Talk: A Computational Study of Bidirectional Promoters in the Human Genome. 361-371 - Mark J. Lawson, Liqing Zhang:
The Identification of Antisense Gene Pairs Through Available Software. 372-381 - Steinar Thorvaldsen, Elinor Ytterstad, Tor Flå:
Inferring Weak Adaptations and Selection Biases in Proteins from Composition and Substitution Matrices. 382-393 - Michael E. Sparks, Volker Brendel, Karin S. Dorman:
Markov Model Variants for Appraisal of Coding Potential in Plant DNA. 394-405 - Zheng Rong Yang:
Predicting Palmitoylation Sites Using a Regularised Bio-basis Function Neural Network. 406-417 - Hao Yu, Minlie Huang, Xiaoyan Zhu, Yabin Guo:
A Novel Kernel-Based Approach for Predicting Binding Peptides for HLA Class II Molecules. 418-429 - Margaret Dah-Tsyr Chang, Hao-Teng Chang, Rong-Yuan Huang, Wen-Shyong Tzou, Chih-Hong Liu, Wei-Jun Zhung, Hsien-Wei Wang, Chun-Tien Chang, Tun-Wen Pai:
A Database for Prediction of Unique Peptide Motifs as Linear Epitopes. 430-440 - Dan He:
A Novel Greedy Algorithm for the Minimum Common String Partition Problem. 441-452 - Mun-Ho Choi, In-Seon Jeong, Seung-Ho Kang, Hyeong-Seok Lim:
An Efficient Algorithm for Finding Gene-Specific Probes for DNA Microarrays. 453-464 - Chengpeng Bi:
Multiple Sequence Local Alignment Using Monte Carlo EM Algorithm. 465-476 - Hyunsoo Kim, Haesun Park:
Cancer Class Discovery Using Non-negative Matrix Factorization Based on Alternating Non-negativity-Constrained Least Squares. 477-487 - Chen Liao, Shutao Li:
A Support Vector Machine Ensemble for Cancer Classification Using Gene Expression Data. 488-495 - Xiujuan Chen, Yichuan Zhao, Yan-Qing Zhang, Robert W. Harrison:
Combining SVM Classifiers Using Genetic Fuzzy Systems Based on AUC for Gene Expression Data Analysis. 496-505 - Dandan Song, Zhidong Deng:
A BP-SCFG Based Approach for RNA Secondary Structure Prediction with Consecutive Bases Dependency and Their Relative Positions Information. 506-517 - Minghui Jiang, Martin Mayne, Joel Gillespie:
Delta: A Toolset for the Structural Analysis of Biological Sequences on a 3D Triangular Lattice. 518-529 - Xuezheng Fu, Bernard Chen, Yi Pan, Robert W. Harrison:
Statistical Estimate for the Size of the Protein Structural Vocabulary. 530-538 - Cui Lin, Shiyong Lu, Danqing Wu, Jing Hua, Otto Muzik:
Coclustering Based Parcellation of Human Brain Cortex Using Diffusion Tensor MRI. 539-550 - Hongwei Wu, Fenglou Mao, Victor Olman, Ying Xu:
An Algorithm for Hierarchical Classification of Genes of Prokaryotic Genomes. 551-563 - Mudassir Fayyaz, Asifullah Khan, Adnan Mujahid, Alex Kavokin:
Using Multi Level Nearest Neighbor Classifiers for G-Protein Coupled Receptor Sub-families Prediction. 564-576 - Mark Borodovsky:
Invited Talk: Ab Initio Gene Finding Engines: What Is Under the Hood. 577 - Marco Vassura, Luciano Margara, Filippo Medri, Pietro di Lena, Piero Fariselli, Rita Casadio:
Reconstruction of 3D Structures from Protein Contact Maps. 578-589 - Gulsah Altun, Hae-Jin Hu, Stefan Gremalschi, Robert W. Harrison, Yi Pan:
A Feature Selection Algorithm Based on Graph Theory and Random Forests for Protein Secondary Structure Prediction. 590-600 - Amin R. Mazloom, Kalyan Basu, Subhrangsu S. Mandal, Mehran Sorourian, Sajal K. Das:
DNA Sites Buried in Nucleosome Become Accessible at Room Temperature: A Discrete-Event-Simulation Based Modeling Approach. 601-614 - Shiquan Wu, Jing Li:
Comparative Analysis of Gene-Coexpression Networks Across Species. 615-626 - Jizhen Zhao, Dongsheng Che, Liming Cai:
Comparative Pathway Prediction Via Unified Graph Modeling of Genomic Structure Information. 627-637 - Roberto Barbuti, Andrea Maggiolo-Schettini, Paolo Milazzo:
Extending the Calculus of Looping Sequences to Model Protein Interaction at the Domain Level. 638-649
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