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ORCIDDongqing Wei
Dong-Qing Wei – Dongqing-Wei
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Journal Articles
- 2024
[j77]Abdul Nasir, Abdus Samad, Sami Ullah, Arif Ali, Dong-Qing Wei
, Bai Qian:
Omicron variant (B.1.1.529) challenge the integrity of blood brain barrier: Evidence from protein structural analysis. Comput. Biol. Medicine 169: 107906 (2024)- [j76]Muhammad Shahab, Muhammad Waleed Iqbal, Abbas Ahmad, Fahad M. Alshabrmi, Dong-Qing Wei, Abbas Khan, Guojun Zheng:
Immunoinformatics-driven In silico vaccine design for Nipah virus (NPV): Integrating machine learning and computational epitope prediction. Comput. Biol. Medicine 170: 108056 (2024) - [j75]Yufang Zhang, Jiayi Li, Shenggeng Lin, Jianwei Zhao, Yi Xiong, Dong-Qing Wei:
An end-to-end method for predicting compound-protein interactions based on simplified homogeneous graph convolutional network and pre-trained language model. J. Cheminformatics 16(1): 67 (2024) - [j74]Aamir Mehmood, Aman Chandra Kaushik, Dong-Qing Wei:
DDSBC: A Stacking Ensemble Classifier-Based Approach for Breast Cancer Drug-Pair Cell Synergy Prediction. J. Chem. Inf. Model. 64(16): 6421-6431 (2024) - [j73]Chen Zhang, Junhui Gao, Hong-Yu Chen, Lingxin Kong, Guangshuo Cao, Xiangyu Guo, Wei Liu, Bin Ren, Dong-Qing Wei:
STGIC: A graph and image convolution-based method for spatial transcriptomic clustering. PLoS Comput. Biol. 20(2) (2024) - 2023
- [j72]Hongwei Chen, Yunpeng Cai, Chaojie Ji, Gurudeeban Selvaraj, Dongqing Wei, Hongyan Wu:
AdaPPI: identification of novel protein functional modules via adaptive graph convolution networks in a protein-protein interaction network. Briefings Bioinform. 24(1) (2023) - [j71]Yitian Fang, Fan Xu, Lesong Wei, Yi Jiang, Jie Chen, Leyi Wei, Dong-Qing Wei:
AFP-MFL: accurate identification of antifungal peptides using multi-view feature learning. Briefings Bioinform. 24(1) (2023) - [j70]Jing Zhao, Bowen Zhao, Xiaotong Song, Chujun Lyu, Weizhi Chen, Yi Xiong, Dong-Qing Wei:
Subtype-DCC: decoupled contrastive clustering method for cancer subtype identification based on multi-omics data. Briefings Bioinform. 24(2) (2023) - [j69]Asma Sindhoo Nangraj, Saima Sipy, Abbas Khan, Gurudeeban Selvaraj, Abdulrahman Alshammari, Mark E. Casida, Dong-Qing Wei:
ESOMIR: a curated database of biomarker genes and miRNAs associated with esophageal cancer. Database J. Biol. Databases Curation 2023 (2023) - [j68]Yitian Fang, Yi Jiang, Leyi Wei, Qin Ma, Zhixiang Ren, Qianmu Yuan, Dong-Qing Wei:
DeepProSite: structure-aware protein binding site prediction using ESMFold and pretrained language model. Bioinform. 39(12) (2023) - [j67]Zhaobin Xu, Dongqing Wei, Qiangcheng Zeng, Hongmei Zhang, Yinghui Sun, Jacques Demongeot:
More or less deadly? A mathematical model that predicts SARS-CoV-2 evolutionary direction. Comput. Biol. Medicine 153: 106510 (2023) - [j66]Abbas Khan, Shoaib Adil, Hafiza Ayesha Qudsia, Yasir Waheed, Fahad M. Alshabrmi, Dong-Qing Wei:
Structure-based design of promising natural products to inhibit thymidylate kinase from Monkeypox virus and validation using free energy calculations. Comput. Biol. Medicine 158: 106797 (2023) - [j65]Yifan Jin, Addeela Fayyaz, Ayesha Liaqat, Abbas Khan, Abdulrahman Alshammari, Yanjing Wang, Ruo-Xu Gu, Dong-Qing Wei:
Proteomics-based vaccine targets annotation and design of subunit and mRNA-based vaccines for Monkeypox virus (MPXV) against the recent outbreak. Comput. Biol. Medicine 159: 106893 (2023) - [j64]Wenfeng Li, Farah Bano, Abbas Khan, Dong-Qing Wei, Abdulrahman Alshammari, Bin Xu, Yanjing Wang:
Inhibition of cMYC-MAX transcription factors hetero-dimerization with structurally engineered omoMYC to downregulate oncogenic pathways in renal carcinoma. Comput. Biol. Medicine 164: 107257 (2023) - [j63]Jie Chen, Zhiwei Nie, Yu Wang, Kai Wang, Fan Xu, Zhiheng Hu, Bing Zheng, Zhennan Wang, Guoli Song, Jingyi Zhang, Jie Fu, Xiansong Huang, Zhongqi Wang, Zhixiang Ren, Qiankun Wang, Daixi Li, Dongqing Wei, Bin Zhou, Chao Yang, Yonghong Tian:
Running ahead of evolution - AI-based simulation for predicting future high-risk SARS-CoV-2 variants. Int. J. High Perform. Comput. Appl. 37(6): 650-665 (2023) - [j62]Heqi Sun, Jianmin Wang, Hongyan Wu, Shenggeng Lin, Junwei Chen, Jinghua Wei, Shuai Lv, Yi Xiong, Dong-Qing Wei:
A Multimodal Deep Learning Framework for Predicting PPI-Modulator Interactions. J. Chem. Inf. Model. 63(23): 7363-7372 (2023) - 2022
- [j61]Shenggeng Lin, Yanjing Wang, Lingfeng Zhang, Yanyi Chu, Yatong Liu, Yitian Fang, Mingming Jiang, Qiankun Wang, Bowen Zhao, Yi Xiong, Dong-Qing Wei:
MDF-SA-DDI: predicting drug-drug interaction events based on multi-source drug fusion, multi-source feature fusion and transformer self-attention mechanism. Briefings Bioinform. 23(1) (2022) - [j60]Yaning Yang, Xiaoqi Wang, Deshan Zhou, Dong-Qing Wei, Shaoliang Peng:
SVPath: an accurate pipeline for predicting the pathogenicity of human exon structural variants. Briefings Bioinform. 23(2) (2022) - [j59]Yi Cao, Zhen-Qun Yang, Xu-Lu Zhang, Wenqi Fan, Yaowei Wang, Jiajun Shen, Dong-Qing Wei, Qing Li, Xiao-Yong Wei:
Identifying the kind behind SMILES - anatomical therapeutic chemical classification using structure-only representations. Briefings Bioinform. 23(5) (2022) - [j58]Fahad Humayun, Yutong Cai, Abbas Khan, Syed Ali Farhan, Fatima Khan, Usman Ishrat Rana, Anum binte Qamar, Nasim Fawad, Shazia Shamas, Dongqing-Wei:
Structure-guided design of multi-epitopes vaccine against variants of concern (VOCs) of SARS-CoV-2 and validation through In silico cloning and immune simulations. Comput. Biol. Medicine 140: 105122 (2022) - [j57]Fahad Humayun, Abbas Khan, Sajjad Ahmad, Yuchen Wang, Guoshen Wei, N. Nizam-Uddin, Zahid Hussain, Wajid Khan, Nasib Zaman, Muhammad Rizwan, Muhammad Waseem, Dong-Qing Wei:
Abrogation of SARS-CoV-2 interaction with host (NRP1) neuropilin-1 receptor through high-affinity marine natural compounds to curtail the infectivity: A structural-dynamics data. Comput. Biol. Medicine 141: 104714 (2022) - [j56]Abbas Khan, Sarfaraz Hussain, Sajjad Ahmad, Muhammad Suleman, Imrana Bukhari, Taimoor Khan, Farooq Rashid, Abul Kalam Azad, Muhammad Waseem, Wajid Khan, Zahid Hussain, Asghar Khan, Syed Shujait Ali, Qiyao Qin, Dong-Qing Wei:
Computational modelling of potentially emerging SARS-CoV-2 spike protein RBDs mutations with higher binding affinity towards ACE2: A structural modelling study. Comput. Biol. Medicine 141: 105163 (2022) - [j55]Abdullah Shah, Saira Rehmat, Iqra Aslam, Muhmmad Suleman, Farah Batool, Abdul Aziz, Farooq Rashid, Midrarullah, Muhmmad Asif Nawaz, Syed Shujait Ali, Muhammad Junaid, Abbas Khan, Dong-Qing Wei:
Comparative mutational analysis of SARS-CoV-2 isolates from Pakistan and structural-functional implications using computational modelling and simulation approaches. Comput. Biol. Medicine 141: 105170 (2022) - [j54]Aamir Mehmood, Sadia Nawab, Yanjing Wang, Aman Chandra Kaushik, Dong-Qing Wei:
Discovering potent inhibitors against the Mpro of the SARS-CoV-2. A medicinal chemistry approach. Comput. Biol. Medicine 143: 105235 (2022) - [j53]Ismail Shah, Sehrooz Jamil, Saira Rehmat, Hammad Ahmad Butt, Syed Shujait Ali, Muhammad Idrees, Yifei Zhan, Zahid Hussain, Shahid Ali, Muhammad Waseem, Arshad Iqbal, Sajjad Ahmad, Abbas Khan, Yanjing Wang, Dong-Qing Wei:
Evaluation and identification of essential therapeutic proteins and vaccinomics approach towards multi-epitopes vaccine designing against Legionella pneumophila for immune response instigation. Comput. Biol. Medicine 143: 105291 (2022) - [j52]Imtiaz Ali, Abbas Khan, Zhang Fa, Taimoor Khan, Dong-Qing Wei, Jianting Zheng:
Crystal structure of Acetyl-CoA carboxylase (AccB) from Streptomyces antibioticus and insights into the substrate-binding through in silico mutagenesis and biophysical investigations. Comput. Biol. Medicine 145: 105439 (2022) - [j51]Taimoor Khan, Muhammad Suleman, Syed Shujait Ali, Muhammad Farhan Sarwar, Imtiaz Ali, Liaqat Ali, Abbas Khan, Bakht Rokhan, Yanjing Wang, Ruili Zhao, Dong-Qing Wei:
Subtractive proteomics assisted therapeutic targets mining and designing ensemble vaccine against Candida auris for immune response induction. Comput. Biol. Medicine 145: 105462 (2022) - [j50]Abbas Khan, Wenfeng Li, Amna Ambreen, Dong-Qing Wei, Yanjing Wang, Yuanshen Mao:
A protein coupling and molecular simulation analysis of the clinical mutants of androgen receptor revealed a higher binding for Leupaxin, to increase the prostate cancer invasion and motility. Comput. Biol. Medicine 146: 105537 (2022) - [j49]Athar Shafiq, Farrukh Zubair, Amna Ambreen, Muhammad Suleman, Qudsia Yousafi, Zahid Rasul Niazi, Zeeshan Anwar, Abbas Khan, Anwar Mohammad, Dong-Qing Wei:
Investigation of the binding and dynamic features of A.30 variant revealed higher binding of RBD for hACE2 and escapes the neutralizing antibody: A molecular simulation approach. Comput. Biol. Medicine 146: 105574 (2022) - [j48]Muhammad Suleman, Uzair Asad, Shafia Arshad, Ayaz ur Rahman, Fazal Akbar, Haji Khan, Zahid Hussain, Syed Shujait Ali, Anwar Mohammad, Abbas Khan, Liaqat Ali, Dong-Qing Wei:
Screening of immune epitope in the proteome of the Dabie bandavirus, SFTS, to design a protein-specific and proteome-wide vaccine for immune response instigation using an immunoinformatics approaches. Comput. Biol. Medicine 148: 105893 (2022) - [j47]Shenggeng Lin, Guangwei Zhang, Dong-Qing Wei, Yi Xiong:
DeepPSE: Prediction of polypharmacy side effects by fusing deep representation of drug pairs and attention mechanism. Comput. Biol. Medicine 149: 105984 (2022) - [j46]Shenggeng Lin, Weizhi Chen, Gengwang Chen, Songchi Zhou, Dong-Qing Wei, Yi Xiong:
MDDI-SCL: predicting multi-type drug-drug interactions via supervised contrastive learning. J. Cheminformatics 14(1): 81 (2022) - [j45]Yanyi Chu, Yan Zhang, Qiankun Wang, Lingfeng Zhang, Xuhong Wang, Yanjing Wang, Dennis Russell Salahub, Qin Xu, Jianmin Wang, Xue Jiang, Yi Xiong, Dong-Qing Wei:
A transformer-based model to predict peptide-HLA class I binding and optimize mutated peptides for vaccine design. Nat. Mach. Intell. 4(3): 300-311 (2022) - 2021
- [j44]Zhiwen Shi, Yanyi Chu, Yonghong Zhang, Yanjing Wang, Dong-Qing Wei:
Prediction of Blood-Brain Barrier Permeability of Compounds by Fusing Resampling Strategies and eXtreme Gradient Boosting. IEEE Access 9: 9557-9566 (2021) - [j43]Nagina Inayat, Mukhtaj Khan, Nadeem Iqbal, Salman Khan, Mushtaq Raza, Dost Muhammad Khan, Abbas Khan, Dong-Qing Wei:
iEnhancer-DHF: Identification of Enhancers and Their Strengths Using Optimize Deep Neural Network With Multiple Features Extraction Methods. IEEE Access 9: 40783-40796 (2021) - [j42]Nazia Azim, Nadeem Iqbal, Jamil Ahmad, Mukhtaj Khan, Amnah Siddiqa, Javaria Ashraf, Abbas Khan, Dong-Qing Wei:
A Static Analysis of Wnt/β-Catenin and Wnt/Ca2+ Biological Regulatory Networks for ARVC Using Automata Network Model. IEEE Access 9: 107611-107624 (2021) - [j41]Yanyi Chu, Aman Chandra Kaushik, Xiangeng Wang, Wei Wang, Yufang Zhang, Xiaoqi Shan, Dennis Russell Salahub, Yi Xiong, Dong-Qing Wei:
DTI-CDF: a cascade deep forest model towards the prediction of drug-target interactions based on hybrid features. Briefings Bioinform. 22(1): 451-462 (2021) - [j40]Yanyi Chu, Xiaoqi Shan, Tianhang Chen, Mingming Jiang, Yanjing Wang, Qiankun Wang, Dennis Russell Salahub, Yi Xiong, Dong-Qing Wei:
DTI-MLCD: predicting drug-target interactions using multi-label learning with community detection method. Briefings Bioinform. 22(3) (2021) - [j39]Aman Chandra Kaushik, Yanjing Wang, Xiangeng Wang, Dong-Qing Wei:
Irinotecan and vandetanib create synergies for treatment of pancreatic cancer patients with concomitant TP53 and KRAS mutations. Briefings Bioinform. 22(3) (2021) - [j38]Wei Wang, Qiuying Dai, Fang Li, Yi Xiong, Dong-Qing Wei:
MLCDForest: multi-label classification with deep forest in disease prediction for long non-coding RNAs. Briefings Bioinform. 22(3) (2021) - [j37]Yanyi Chu, Xuhong Wang, Qiuying Dai, Yanjing Wang, Qiankun Wang, Shaoliang Peng, Xiaoyong Wei, Jingfei Qiu, Dennis Russell Salahub, Yi Xiong, Dong-Qing Wei:
MDA-GCNFTG: identifying miRNA-disease associations based on graph convolutional networks via graph sampling through the feature and topology graph. Briefings Bioinform. 22(6) (2021) - [j36]Mingming Jiang, Bowen Zhao, Shenggan Luo, Qiankun Wang, Yanyi Chu, Tianhang Chen, Xueying Mao, Yatong Liu, Yanjing Wang, Xue Jiang, Dong-Qing Wei, Yi Xiong:
NeuroPpred-Fuse: an interpretable stacking model for prediction of neuropeptides by fusing sequence information and feature selection methods. Briefings Bioinform. 22(6) (2021) - [j35]Aman Chandra Kaushik, Qiqi Wu, Li Lin, Haibo Li, Longqi Zhao, Zilu Wen, Yanzheng Song, Qihang Wu, Jin Wang, Xiaokui Guo, Hualin Wang, Xiaoli Yu, Dongqing Wei, Shulin Zhang:
Exosomal ncRNAs profiling of mycobacterial infection identified miRNA-185-5p as a novel biomarker for tuberculosis. Briefings Bioinform. 22(6) (2021) - [j34]Abbas Khan, Taimoor Khan, Syed Nouman Nasir, Syed Shujait Ali, Muhammad Suleman, Muhammad Rizwan, Muhammad Waseem, Shahid Ali, Xia Zhao, Dong-Qing Wei:
BC-TFdb: a database of transcription factor drivers in breast cancer. Database J. Biol. Databases Curation 2021 (2021) - [j33]Taimoor Khan, Abbas Khan, Dong-Qing Wei:
MMV-db: vaccinomics and RNA-based therapeutics database for infectious hemorrhagic fever-causing mammarenaviruses. Database J. Biol. Databases Curation 2021 (2021) - [j32]Adnan Zeb, Syed Shujait Ali, Abul Kalam Azad, Muhammad Safdar, Zeeshan Anwar, Muhammad Suleman, N. Nizam-Uddin, Abbas Khan, Dong-Qing Wei:
Genome-wide screening of vaccine targets prioritization and reverse vaccinology aided design of peptides vaccine to enforce humoral immune response against Campylobacter jejuni. Comput. Biol. Medicine 133: 104412 (2021) - [j31]Abbas Khan, Shahzeb Khan, Shoaib Saleem, N. Nizam-Uddin, Anwar Mohammad, Taimoor Khan, Sajjad Ahmad, Muhammad Arshad, Syed Shujait Ali, Muhammad Suleman, Dong-Qing Wei:
Immunogenomics guided design of immunomodulatory multi-epitope subunit vaccine against the SARS-CoV-2 new variants, and its validation through in silico cloning and immune simulation. Comput. Biol. Medicine 133: 104420 (2021) - [j30]Taimoor Khan, Abbas Khan, Syed Nouman Nasir, Sajjad Ahmad, Syed Shujait Ali, Dong-Qing Wei:
CytomegaloVirusDb: Multi-omics knowledge database for cytomegaloviruses. Comput. Biol. Medicine 135: 104563 (2021) - [j29]Qiuying Dai, Yanyi Chu, Zhiqi Li, Yusong Zhao, Xueying Mao, Yanjing Wang, Yi Xiong, Dong-Qing Wei:
MDA-CF: Predicting MiRNA-Disease associations based on a cascade forest model by fusing multi-source information. Comput. Biol. Medicine 136: 104706 (2021) - [j28]Muhammad Tahir Ul Qamar, Sajjad Ahmad, Abbas Khan, Muhammad Usman Mirza, Sarfraz Ahmad, Asma Abro, Ling-Ling Chen, Ahmad Almatroudi, Dong-Qing Wei:
Structural probing of HapR to identify potent phytochemicals to control Vibrio cholera through integrated computational approaches. Comput. Biol. Medicine 138: 104929 (2021) - [j27]Muhammad Suleman, Qudsia Yousafi, Javaid Ali, Syed Shujait Ali, Zahid Hussain, Shahid Ali, Muhammad Waseem, Arshad Iqbal, Sajjad Ahmad, Abbas Khan, Yanjing Wang, Dong-Qing Wei:
Bioinformatics analysis of the differences in the binding profile of the wild-type and mutants of the SARS-CoV-2 spike protein variants with the ACE2 receptor. Comput. Biol. Medicine 138: 104936 (2021) - [j26]Aamir Mehmood, Aman Chandra Kaushik, Qiankun Wang, Cheng-Dong Li, Dong-Qing Wei:
Bringing Structural Implications and Deep Learning-Based Drug Identification for KRAS Mutants. J. Chem. Inf. Model. 61(2): 571-586 (2021) - [j25]Dong-Qing Wei, Aman Chandra Kaushik, Gurudeeban Selvaraj, Yi Pan:
Editorial: Computational Genomics and Molecular Medicine for Emerging COVID-19. IEEE ACM Trans. Comput. Biol. Bioinform. 18(4): 1227-1229 (2021) - [j24]Deshan Zhou, Shaoliang Peng, Dong-Qing Wei, Wu Zhong, Yutao Dou, Xiaolan Xie:
LUNAR : Drug Screening for Novel Coronavirus Based on Representation Learning Graph Convolutional Network. IEEE ACM Trans. Comput. Biol. Bioinform. 18(4): 1290-1298 (2021) - [j23]Aman Chandra Kaushik, Aamir Mehmood, Gurudeeban Selvaraj, Xiaofeng Dai, Yi Pan, Dong-Qing Wei:
CoronaPep: An Anti-Coronavirus Peptide Generation Tool. IEEE ACM Trans. Comput. Biol. Bioinform. 18(4): 1299-1304 (2021) - 2020
- [j22]Wei Wang, Xiaoqing Guan, Muhammad Tahir Khan, Yi Xiong, Dong-Qing Wei:
LMI-DForest: A deep forest model towards the prediction of lncRNA-miRNA interactions. Comput. Biol. Chem. 89: 107406 (2020) - [j21]Shaozhen Ding, Yu Tian, Pengli Cai, Dachuan Zhang, Xingxiang Cheng, Dandan Sun, Le Yuan, Junni Chen, Weizhong Tu, Dong-Qing Wei, Qian-Nan Hu:
novoPathFinder: a webserver of designing novel-pathway with integrating GEM-model. Nucleic Acids Res. 48(Webserver-Issue): W477-W487 (2020) - [j20]Shaoliang Peng, Xiaoyu Zhang, Wenhe Su, Dong Dong, Yutong Lu, Xiangke Liao, Kai Lu, Canqun Yang, Jie Liu, Weiliang Zhu, Dongqing Wei:
High-Scalable Collaborated Parallel Framework for Large-Scale Molecular Dynamic Simulation on Tianhe-2 Supercomputer. IEEE ACM Trans. Comput. Biol. Bioinform. 17(3): 804-816 (2020) - 2019
- [j19]Satyavani Kaliamurthi, Gurudeeban Selvaraj, Sathishkumar Chinnasamy, Qian Wang, Asma Sindhoo Nangraj, William C. S. Cho, Keren Gu, Dong-Qing Wei:
Immunomics Datasets and Tools: To Identify Potential Epitope Segments for Designing Chimeric Vaccine Candidate to Cervix Papilloma. Data 4(1): 31 (2019) - [j18]Cheng-Dong Li, Muhammad Junaid, Hui Chen, Arif Ali, Dong-Qing Wei:
Helix-Switch Enables C99 Dimer Transition between the Multiple Conformations. J. Chem. Inf. Model. 59(1): 339-350 (2019) - [j17]Muhammad Junaid, Muhammad Tahir Khan, Shaukat Iqbal Malik, Dong-Qing Wei:
Insights into the Mechanisms of the Pyrazinamide Resistance of Three Pyrazinamidase Mutants N11K, P69T, and D126N. J. Chem. Inf. Model. 59(1): 498-508 (2019) - [j16]Xiaoqi Shan, Xiangeng Wang, Cheng-Dong Li, Yanyi Chu, Yufang Zhang, Yi Xiong, Dong-Qing Wei:
Prediction of CYP450 Enzyme-Substrate Selectivity Based on the Network-Based Label Space Division Method. J. Chem. Inf. Model. 59(11): 4577-4586 (2019) - 2018
- [j15]Ling Liu, Yi Xiong, Hongyun Gao, Dong-Qing Wei, Julie C. Mitchell, Xiaolei Zhu:
dbAMEPNI: a database of alanine mutagenic effects for protein-nucleic acid interactions. Database J. Biol. Databases Curation 2018: bay034 (2018) - [j14]Abbas Khan, Arif Ali, Muhammad Junaid, Chang Liu, Aman Chandra Kaushik, William C. S. Cho, Dong-Qing Wei:
Identification of novel drug targets for diamond-blackfan anemia based on RPS19 gene mutation using protein-protein interaction network. BMC Syst. Biol. 12(4): 5-16 (2018) - [j13]Gurudeeban Selvaraj, Satyavani Kaliamurthi, Aman Chandra Kaushik, Abbas Khan, Yong-Kai Wei, William C. S. Cho, Keren Gu, Dong-Qing Wei:
Identification of target gene and prognostic evaluation for lung adenocarcinoma using gene expression meta-analysis, network analysis and neural network algorithms. J. Biomed. Informatics 86: 120-134 (2018) - 2017
- [j12]Shuang Hou, Ruo-Xu Gu, Dong-Qing Wei:
Inhibition of β-Amyloid Channels with a Drug Candidate wgx-50 Revealed by Molecular Dynamics Simulations. J. Chem. Inf. Model. 57(11): 2811-2821 (2017) - [j11]Weizhong Tu, Shaozhen Ding, Ling Wu, Zhe Deng, Hui Zhu, Xiaotong Xu, Chen Lin, Chaonan Ye, Minlu Han, Mengna Zhao, Juan Liu, Zixin Deng, Junni Chen, Dong-Qing Wei, Qian-Nan Hu:
SynBioEcoli: a comprehensive metabolism network of engineered E. coli in three dimensional visualization. Quant. Biol. 5(1): 99-104 (2017) - 2015
- [j10]Miaomiao Zhao, Yunpeng Cai, Jiankui He, Guanyu Wang, Dongqing Wei, Yanjie Wei, Caiwan Zhang, Fengfeng Zhou:
Personalized clinical data screening: Special issue on health informatics. Comput. Biol. Medicine 61: 161-162 (2015) - 2013
- [j9]Qi Chen, John K. Buolamwini, Jeremy C. Smith, Aixiu Li, Qin Xu, Xiaolin Cheng, Dongqing Wei:
Impact of Resistance Mutations on Inhibitor Binding to HIV-1 Integrase. J. Chem. Inf. Model. 53(12): 3297-3307 (2013) - 2012
- [j8]Ying Wang, Xiaolin Wu, Dong-Qing Wei, Yi-Xue Li, Jing-Fang Wang:
Autoinhibitory Mechanism for the Mutation-Induced Impaired FGF9 Signaling. J. Chem. Inf. Model. 52(9): 2422-2429 (2012) - [j7]Juan Huo, Alan F. Murray, Dongqing Wei:
Adaptive Visual and Auditory Map Alignment in Barn Owl Superior Colliculus and Its Neuromorphic Implementation. IEEE Trans. Neural Networks Learn. Syst. 23(9): 1486-1497 (2012) - 2011
- [j6]Tao Zhang, Limin Angela Liu, David F. V. Lewis, Dong-Qing Wei:
Long-Range Effects of a Peripheral Mutation on the Enzymatic Activity of Cytochrome P450 1A2. J. Chem. Inf. Model. 51(6): 1336-1346 (2011) - [j5]Jue Li, Dong-Qing Wei, Jing-Fang Wang, Yi-Xue Li:
A Negative Cooperativity Mechanism of Human CYP2E1 Inferred from Molecular Dynamics Simulations and Free Energy Calculations. J. Chem. Inf. Model. 51(12): 3217-3225 (2011) - 2010
- [j4]Zhiyuan Xie, Tao Zhang, Jing-Fang Wang, Kuo-Chen Chou, Dongqing Wei:
The computational model to predict accurately inhibitory activity for inhibitors towardsCYP3A4. Comput. Biol. Medicine 40(11-12): 845-852 (2010) - [j3]Ying Wang, Dongqing Wei, Jing-Fang Wang:
Molecular Dynamics Studies on T1 Lipase: Insight into a Double-Flap Mechanism. J. Chem. Inf. Model. 50(5): 875-878 (2010) - 2005
- [j2]Suzanne W. Sirois, George E. Hatzakis, Dongqing Wei, Qishi Du, Kuo-Chen Chou:
Assessment of chemical libraries for their druggability. Comput. Biol. Chem. 29(1): 55-67 (2005) - 2004
- [j1]Suzanne W. Sirois, Dongqing Wei, Qishi Du, Kuo-Chen Chou:
Virtual Screening for SARS-CoV Protease Based on KZ7088 Pharmacophore Points. J. Chem. Inf. Model. 44(3): 1111-1122 (2004)
Conference and Workshop Papers
- 2023
- [c6]Keliang Zhao, Jovial Niyogisubizo, Linxia Xiao, Yi Pan, Dongqing Wei, Didi Rosiyadi, Yanjie Wei:
A Novel Deep Learning Approach Featuring Graph-Based Algorithm for Cell Segmentation and Tracking. BIBM 2023: 1752-1757 - 2022
- [c5]Tianyu Wang, Wenming Yang, Jie Chen, Yonghong Tian, Dong-Qing Wei:
ConformerDTI: Local Features Coupling Global Representations for Drug-Target Interaction Prediction. BIBM 2022: 1227-1234 - 2021
- [c4]Aman Chandra Kaushik, Aamir Mehmood, Ajay Kumar, Ankit Babu, Dong-Qing Wei, Zhongming Zhao:
Mining Cancer Cell Line-Based Drugs to Benefit KRAS(G12D) Pancreatic Adenocarcinoma Patients. BIBM 2021: 2423-2428 - [c3]Bin Xin, Yaning Yang, Dongqing Wei, Shaoliang Peng:
CFCN: A Multi-scale Fully Convolutional Network with Dilated Convolution for Nuclei Classification and Localization. ISBRA 2021: 314-323 - 2020
- [c2]Xiaoyi Feng, Shaoliang Peng, Fei Li, Ying Xu, Xiangxiang Zeng, Dong-Qing Wei, Yunhao Liu:
A drug information embedding method based on graph convolution neural network. HealthCom 2020: 1-6 - 2016
- [c1]Shaoliang Peng, Xiaoyu Zhang, Yutong Lu, Xiangke Liao, Kai Lu, Canqun Yang, Jie Liu, Weiliang Zhu, Dongqing Wei:
mAMBER: A CPU/MIC collaborated parallel framework for AMBER on Tianhe-2 supercomputer. BIBM 2016: 651-657
Editorship
- 2011
- [e1]Limin Angela Liu, Dong-Qing Wei, Yixue Li, Huimin Lei:
Handbook of Research on Computational and Systems Biology - Interdisciplinary Applications. IGI Global 2011, ISBN 978-1-60960-491-2 [contents]
Coauthor Index
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last updated on 2024-10-11 17:29 CEST by the dblp team
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