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Uwe Scholz
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Books and Theses
- 2002
- [b1]Uwe Scholz:
FRIDAQ - ein Framework zur Integration molekularbiologischer Datenbestände. Otto-von-Guericke University Magdeburg, Germany, Shaker 2002, ISBN 978-3-8322-0991-9, pp. 1-171
Journal Articles
- 2022
- [j24]Manuel Feser
, Patrick König
, Anne Fiebig
, Daniel Arend
, Matthias Lange
, Uwe Scholz
:
On the way to plant data commons - a genotyping use case. J. Integr. Bioinform. 19(4) (2022) - 2021
- [j23]Gerhard Mayer
, Wolfgang Müller, Karin Schork
, Julian Uszkoreit
, Andreas Weidemann, Ulrike Wittig, Maja Rey, Christian Quast, Janine Felden, Frank Oliver Glöckner, Matthias Lange
, Daniel Arend, Sebastian Beier, Astrid Junker, Uwe Scholz, Danuta Schüler
, Hans A. Kestler
, Daniel Wibberg, Alfred Pühler, Sven Twardziok
, Jürgen Eils, Roland Eils
, Steve Hoffmann, Martin Eisenacher
, Michael Turewicz
:
Implementing FAIR data management within the German Network for Bioinformatics Infrastructure (de.NBI) exemplified by selected use cases. Briefings Bioinform. 22(5) (2021) - 2019
- [j22]Gerhard Mayer
, Christian Quast
, Janine Felden, Matthias Lange
, Manuel Prinz
, Alfred Pühler, Chris Lawerenz, Uwe Scholz
, Frank Oliver Glöckner, Wolfgang Müller, Katrin Marcus, Martin Eisenacher
:
A generally applicable lightweight method for calculating a value structure for tools and services in bioinformatics infrastructure projects. Briefings Bioinform. 20(4): 1215-1221 (2019) - [j21]Peter Selby
, Rafael Abbeloos, Jan Erik Backlund, Martin Basterrechea Salido
, Guillaume Bauchet, Omar E. Benites-Alfaro
, Clayton L. Birkett
, Viana C. Calaminos, Pierre Carceller, Guillaume Cornut, Bruno Vasques Costa, Jeremy D. Edwards
, Richard Finkers
, Star Yanxin Gao, Mehmood Ghaffar, Philip Glaser, Valentin Guignon, Puthick Hok, Andrzej Kilian
, Patrick König
, Jack Elendil B. Lagare, Matthias Lange
, Marie-Angélique Laporte
, Pierre Larmande
, David S. LeBauer
, David A Lyon
, David F. Marshall
, Dave Matthews, Iain Milne
, Naymesh Mistry, Nicolas Morales, Lukas A. Mueller, Pascal Neveu, Evangelia Papoutsoglou
, Brian Pearce, Ivan Perez-Masias
, Cyril Pommier
, Ricardo H. Ramirez-Gonzalez, Abhishek Rathore
, Angel Manica Raquel, Sebastian Raubach
, Trevor Rife
, Kelly Robbins
, Mathieu Rouard
, Chaitanya Sarma, Uwe Scholz
, Guilhem Sempéré, Paul D. Shaw
, Reinhard Simon
, Nahuel Soldevilla, Gordon Stephen
, Qi Sun, Clarysabel Tovar, Grzegorz Uszynski, Maikel Verouden
, The BrAPI consortium:
BrAPI - an application programming interface for plant breeding applications. Bioinform. 35(20): 4147-4155 (2019) - [j20]Mehmood Ghaffar
, Danuta Schüler
, Patrick König
, Daniel Arend
, Astrid Junker
, Uwe Scholz
, Matthias Lange
:
Programmatic Access to FAIRified Digital Plant Genetic Resources. J. Integr. Bioinform. 16(4) (2019) - 2018
- [j19]Jinbo Chen, Uwe Scholz
, Ruonan Zhou, Matthias Lange
:
LAILAPS-QSM: A RESTful API and JAVA library for semantic query suggestions. PLoS Comput. Biol. 14(3) (2018) - 2017
- [j18]Sebastian Beier
, Thomas Thiel, Thomas Münch, Uwe Scholz
, Martin Mascher:
MISA-web: a web server for microsatellite prediction. Bioinform. 33(16): 2583-2585 (2017) - 2016
- [j17]Daniel Arend
, Astrid Junker
, Uwe Scholz
, Danuta Schüler
, Juliane Wylie, Matthias Lange
:
PGP repository: a plant phenomics and genomics data publication infrastructure. Database J. Biol. Databases Curation 2016 (2016) - 2014
- [j16]Daniel Arend
, Matthias Lange, Jinbo Chen, Christian Colmsee
, Steffen Flemming, Denny Hecht, Uwe Scholz
:
e!DAL - a framework to store, share and publish research data. BMC Bioinform. 15: 214 (2014) - [j15]Maria Esch, Jinbo Chen, Stephan Weise
, Keywan Hassani-Pak
, Uwe Scholz
, Matthias Lange
:
A Query Suggestion Workflow for Life Science IR-Systems. J. Integr. Bioinform. 11(2) (2014) - 2013
- [j14]Martin Mascher
, Ingo Schubert
, Uwe Scholz
, Swetlana Friedel:
Patterns of nucleotide asymmetries in plant and animal genomes. Biosyst. 111(3): 181-189 (2013) - 2012
- [j13]Hendrik Mehlhorn
, Matthias Lange
, Uwe Scholz
, Falk Schreiber:
IDPredictor: predict database links in biomedical database. J. Integr. Bioinform. 9(2) (2012) - [j12]Falk Schreiber, Christian Colmsee
, Tobias Czauderna
, Eva Grafahrend-Belau, Anja Hartmann, Astrid Junker
, Björn H. Junker, Matthias Klapperstück, Uwe Scholz
, Stephan Weise
:
MetaCrop 2.0: managing and exploring information about crop plant metabolism. Nucleic Acids Res. 40(Database-Issue): 1173-1177 (2012) - 2011
- [j11]Stephan Weise
, Jinbo Chen, Björn H. Junker, Matthias Klapperstück, Matthias Lange
, Falk Schreiber, Uwe Scholz:
Das Informationssystem MetaCrop zur Unterstützung systembiologischer Forschung an Kulturpflanzen. it Inf. Technol. 53(5): 234-240 (2011) - 2010
- [j10]Matthias Lange
, Karl Spies, Joachim Bargsten, Gregor Haberhauer, Matthias Klapperstück, Michael Leps, Christian Weinel, Röbbe Wünschiers, Mandy Weißbach, Jens Stein, Uwe Scholz
:
The LAILAPS Search Engine: Relevance Ranking in Life Science Databases. J. Integr. Bioinform. 7(2) (2010) - [j9]Klaus Hippe, Christian Colmsee, Tobias Czauderna, Eva Grafahrend-Belau, Björn H. Junker, Christian Klukas, Uwe Scholz
, Falk Schreiber, Stephan Weise:
Novel Developments of the MetaCrop Information System for Facilitating Systems Biological Approaches. J. Integr. Bioinform. 7(3) (2010) - [j8]Matthias Lange
, Karl Spies, Christian Colmsee, Steffen Flemming, Matthias Klapperstück, Uwe Scholz
:
The LAILAPS Search Engine: A Feature Model for Relevance Ranking in Life Science Databases. J. Integr. Bioinform. 7(3) (2010) - 2008
- [j7]Eva Grafahrend-Belau, Stephan Weise
, Dirk Koschützki, Uwe Scholz
, Björn H. Junker, Falk Schreiber:
MetaCrop: a detailed database of crop plant metabolism. Nucleic Acids Res. 36(Database-Issue): 954-958 (2008) - 2007
- [j6]Christian Künne, Ivo Grosse, Inge Matthies, Uwe Scholz, Tatjana Sretenovic-Rajicic, Nils Stein, Andreas Stephanik, Burkhard Steuernagel, Stephan Weise
:
Using Data Warehouse Technology in Crop Plant Bioinformatics. J. Integr. Bioinform. 4(1) (2007) - [j5]Matthias Lange, Axel Himmelbach, Patrick Schweizer, Uwe Scholz:
Data Linkage Graph: computation, querying and knowledge discovery of life science database networks. J. Integr. Bioinform. 4(3) (2007) - 2006
- [j4]Stephan Weise
, Ivo Grosse, Christian Klukas, Dirk Koschützki, Uwe Scholz
, Falk Schreiber, Björn H. Junker:
Meta-All: a system for managing metabolic pathway information. BMC Bioinform. 7: 465 (2006) - 2005
- [j3]Christian Künne, Matthias Lange
, T. Funke, H. Miehe, Thomas Thiel, Ivo Grosse, Uwe Scholz
:
CR-EST: a resource for crop ESTs. Nucleic Acids Res. 33(Database-Issue): 619-621 (2005) - 2002
- [j2]Andreas Freier, Ralf Hofestädt, Matthias Lange, Uwe Scholz, Andreas Stephanik:
BioDataServer: A SQL-based service for the online integration of life science data. Silico Biol. 2(2): 37-57 (2002) - [j1]Thoralf Töpel, Uwe Scholz, Ulrike Mischke, Dagmar Scheible, Ralf Hofestädt, Friedrich Trefz:
Supporting genotype-phenotype correlation with the rare metabolic diseases database Ramedis. Silico Biol. 2(3): 407-414 (2002)
Conference and Workshop Papers
- 2015
- [c20]Christian Colmsee, Jinbo Chen, Kerstin Schneider, Uwe Scholz, Matthias Lange:
Improving search results in life science by recommendations based on semantic information. BTW Workshops 2015: 115-120 - 2014
- [c19]Daniel Arend
, Christian Colmsee, Helmut Knüpffer
, Markus Oppermann
, Uwe Scholz, Danuta Schüler
, Stephan Weise
, Matthias Lange
:
Data Management Experiences and Best Practices from the Perspective of a Plant Research Institute. DILS 2014: 41-49 - 2013
- [c18]Christian Colmsee, Tobias Czauderna, Eva Grafahrend-Belau, Anja Hartmann, Matthias Lange, Martin Mascher, Stephan Weise, Uwe Scholz, Falk Schreiber:
OPTIMAS-DW, MetaCrop and VANTED: A Case Study for Data Integration, Curation and Visualisation in Life Sciences. GI-Jahrestagung 2013: 1834-1840 - 2012
- [c17]Daniel Arend
, Matthias Lange, Christian Colmsee
, Steffen Flemming, Jinbo Chen, Uwe Scholz:
The e!DAL JAVA-API: Store, share and cite primary data in life sciences. BIBM 2012: 1-5 - [c16]Daniel Arend
, Matthias Lange
, Christian Colmsee
, Steffen Flemming, Jinbo Chen, Uwe Scholz:
The e!DAL JAVA-API: Store, share and cite primary data in life sciences. BIBM Workshops 2012: 927-929 - [c15]Matthias Lange, Jinbo Chen, Uwe Scholz:
Information Retrieval in Life Sciences: The LAILAPS Search Engine. GI-Jahrestagung 2012: 1552-1558 - 2009
- [c14]Stephan Weise
, Christian Colmsee
, Eva Grafahrend-Belau, Björn H. Junker, Christian Klukas, Matthias Lange
, Uwe Scholz, Falk Schreiber:
An Integration and Analysis Pipeline for Systems Biology in Crop Plant Metabolism. DILS 2009: 196-203 - [c13]Stephan Weise, Christian Colmsee, Eva Grafahrend-Belau, Björn H. Junker, Christian Klukas, Matthias Lange, Uwe Scholz, Falk Schreiber:
Datenaustausch und Datenintegration zur Modellierung und Analyse metabolischer Netzwerke am Beispiel von Kulturpflanzen. GI Jahrestagung 2009: 693-697 - [c12]Wolfram Schoor, Rüdiger Mecke, Udo Seiffert, Felix Bollenbeck, Uwe Scholz:
Remote Rendering of Large Biological Datasets. GRAPP 2009: 223-227 - 2004
- [c11]Sören Balko, Matthias Lange
, Roland Schnee, Uwe Scholz:
BioDataServer: an Applied Molecular Biological Data Integration Service. DILS 2004: 140-155 - 2002
- [c10]Andreas Freier, Ralf Hofestädt, Matthias Lange, Uwe Scholz:
Information Fusion and Metabolic Network Control. Gene Regulations and Metabolism 2002: 49-84 - 2001
- [c9]Matthias Lange, Andreas Freier, Uwe Scholz, Andreas Stephanik:
A Computational Support for the Access to Integrated Molecular Biology Data. German Conference on Bioinformatics 2001: 203-205 - [c8]Thoralf Töpel, Uwe Scholz, Ulrike Mischke, Dagmar Scheible, Ralf Hofestädt, Friedrich Trefz:
RAMEDIS - Rare Metabolic Diseases Publishing Tool for Genotype-Phenotype Correlation. German Conference on Bioinformatics 2001: 228-231 - [c7]Ralf Kauert, Thoralf Töpel, Uwe Scholz, Ralf Hofestädt:
Information System for the Support of Research, Diagnosis and Therapy of Inborn Metabolic Diseases. MedInfo 2001: 353-356 - [c6]Ulrike Mischke, Uwe Scholz, Thoralf Töpel, Dagmar Scheible, Ralf Hofestädt, Friedrich Trefz:
RAMEDIS - Rare Metabolic Diseases Publishing Tool for Genotype-Phenotype Correlation. MedInfo 2001: 970-974 - 1999
- [c5]Andreas Freier, Ralf Hofestädt, Matthias Lange, Uwe Scholz:
MARGBench - An Approach for Integration, Modeling and Animation of Metabolic Networks. German Conference on Bioinformatics 1999: 190-194 - [c4]Ralf Hofestädt, Ulrike Mischke, Manuela Prüß, Uwe Scholz:
Metabolic Drug Pointing and Information Processing. MIE 1999: 12-15 - 1998
- [c3]Michael Höding, Ralf Hofestädt, Gunter Saake, Uwe Scholz:
Schema Derivation for WWW Information Sources and Their Integration with Databases in Bioinformatics. ADBIS 1998: 296-304 - [c2]Ralf Hofestädt, Manuela Prüß, Uwe Scholz, Holger Urban:
The Metabolic Diseases DataBase (MDDB) - A Molecular Database Toolkit for the Detection of Inborne Errors. German Conference on Bioinformatics 1998 - [c1]Uwe Scholz, Michael Höding:
Erste Erfahrungen bei der Integration heterogener Informationssysteme in der Bioinformatik. Workshop Integration heterogener Softwaresysteme 1998: 96-101
Informal and Other Publications
- 2020
- [i2]Dennis Psaroudakis
, Feng Liu, Patrick König
, Uwe Scholz
, Astrid Junker
, Matthias Lange
, Daniel Arend
:
isa4j: a scalable Java library for creating ISA-Tab metadata. F1000Research 9: 1388 (2020) - 2019
- [i1]Daniel Wibberg
, Bérénice Batut
, Peter Belmann
, Jochen Blom, Frank Oliver Glöckner
, Björn A. Grüning
, Nils Hoffmann
, Nils Kleinbölting, René Rahn, Maja Rey, Uwe Scholz
, Malvika Sharan, Andreas Tauch, Ulrike Trojahn, Björn Usadel, Oliver Kohlbacher
:
The de.NBI / ELIXIR-DE training platform - Bioinformatics training in Germany and across Europe within ELIXIR. F1000Research 8: 1877 (2019)
Coauthor Index
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