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ORCIDIvo Grosse
Person information
- affiliation: Martin Luther University of Halle-Wittenberg, Germany
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2020 – today
- 2021
[j35]Travis J. Lawrence
, Fatemeh Hadi-Nezhad, Ivo Grosse, David H. Ardell:
tSFM 1.0: tRNA Structure-Function Mapper. Bioinform. 37(20): 3654-3656 (2021)
2010 – 2019
- 2019
- [j34]Claus Weinholdt, Henri Wichmann, Johanna Kotrba, David H. Ardell, Matthias Kappler, Alexander W. Eckert, Dirk Vordermark, Ivo Grosse:
Prediction of regulatory targets of alternative isoforms of the epidermal growth factor receptor in a glioblastoma cell line. BMC Bioinform. 20(1): 434:1-434:14 (2019) - [j33]Ralf Eggeling, Ivo Grosse, Mikko Koivisto:
Algorithms for learning parsimonious context trees. Mach. Learn. 108(6): 879-911 (2019) - 2018
- [j32]Hajk-Georg Drost, Alexander Gabel, Jialin Liu, Marcel Quint, Ivo Grosse:
myTAI: evolutionary transcriptomics with R. Bioinform. 34(9): 1589-1590 (2018) - [j31]Ivo Hedtke, Ioana M. Lemnian, Ivo Grosse, Matthias Müller-Hannemann:
Optimal Block-Based Trimming for Next Generation Sequencing. IEEE ACM Trans. Comput. Biol. Bioinform. 15(2): 364-376 (2018) - 2017
- [j30]Ralf Eggeling, Ivo Grosse, Jan Grau:
InMoDe: tools for learning and visualizing intra-motif dependencies of DNA binding sites. Bioinform. 33(4): 580-582 (2017) - [j29]Martin Nettling, Hendrik Treutler, Jesús Cerquides, Ivo Grosse:
Unrealistic phylogenetic trees may improve phylogenetic footprinting. Bioinform. 33(11): 1639-1646 (2017) - [j28]Martin Nettling, Hendrik Treutler, Jesús Cerquides, Ivo Grosse:
Combining phylogenetic footprinting with motif models incorporating intra-motif dependencies. BMC Bioinform. 18(1): 141:1-141:10 (2017) - 2016
- [j27]Ivo Grosse, Katrin Hoffmann:
Bioinformatics challenges of next generation sequencing. it Inf. Technol. 58(3): 117-118 (2016) - 2015
- [j26]Jan Grau, Ivo Grosse, Jens Keilwagen:
PRROC: computing and visualizing precision-recall and receiver operating characteristic curves in R. Bioinform. 31(15): 2595-2597 (2015) - [j25]Pablo A. Moreno, Stephan Beisken, Bhavana Harsha, Venkatesh Muthukrishnan, Ilinca Tudose, Adriano Dekker, Stefanie Dornfeldt, Franziska Taruttis, Ivo Grosse, Janna Hastings, Steffen Neumann, Christoph Steinbeck:
BiNChE: A web tool and library for chemical enrichment analysis based on the ChEBI ontology. BMC Bioinform. 16: 56:1-56:7 (2015) - [j24]Ralf Eggeling, Teemu Roos, Petri Myllymäki, Ivo Grosse:
Inferring intra-motif dependencies of DNA binding sites from ChIP-seq data. BMC Bioinform. 16: 375:1-375:15 (2015) - [j23]Martin Nettling, Hendrik Treutler, Jan Grau, Jens Keilwagen, Stefan Posch, Ivo Grosse:
DiffLogo: a comparative visualization of sequence motifs. BMC Bioinform. 16: 387:1-387:9 (2015) - [j22]Anja Fischer, Frank Fischer, Gerold Jäger, Jens Keilwagen, Paul Molitor, Ivo Grosse:
Computational Recognition of RNA Splice Sites by Exact Algorithms for the Quadratic Traveling Salesman Problem. Comput. 3(2): 285-298 (2015) - [c17]Ralf Eggeling, Mikko Koivisto, Ivo Grosse:
Dealing with small data: On the generalization of context trees. ICML 2015: 1245-1253 - 2014
- [j21]Martin Nettling, Nils Thieme, Andreas Both, Ivo Grosse:
DRUMS: Disk Repository with Update Management and Select option for high throughput sequencing data. BMC Bioinform. 15: 38 (2014) - [j20]Anja Fischer, Frank Fischer, Gerold Jäger, Jens Keilwagen, Paul Molitor, Ivo Grosse:
Exact algorithms and heuristics for the Quadratic Traveling Salesman Problem with an application in bioinformatics. Discret. Appl. Math. 166: 97-114 (2014) - [c16]Ralf Eggeling, Teemu Roos, Petri Myllymäki, Ivo Grosse:
Robust learning of inhomogeneous PMMs. AISTATS 2014: 229-237 - [c15]Ivo Hedtke, Ioana M. Lemnian, Matthias Müller-Hannemann, Ivo Grosse:
On Optimal Read Trimming in Next Generation Sequencing and Its Complexity. AlCoB 2014: 83-94 - [c14]Clemens Beckstein, Sebastian Böcker, Martin Bogdan, Helge Bruelheide, H. Martin Bücker, Joachim Denzler, Peter Dittrich, Ivo Grosse, Alexander Hinneburg, Birgitta König-Ries, Felicitas Löffler, Manja Marz, Matthias Müller-Hannemann, Martin Winter, Wolf Zimmermann:
Explorative Analysis of Heterogeneous, Unstructured, and Uncertain Data - A Computer Science Perspective on Biodiversity Research. DATA 2014: 251-257 - [c13]Yvonne Poeschl, Ivo Grosse, Andreas Gogol-Döring:
Explaining gene responses by linear modeling. GCB 2014: 27-35 - [c12]Jan Grau, Stefan Posch, Ivo Grosse, Jens Keilwagen:
A general approach for discriminative de novo motif discovery from high-throughput data. GCB 2014: 41-43 - 2013
- [j19]Jan Grau, Jens Keilwagen, André Gohr, Ivan A. Paponov, Stefan Posch, Michael Seifert, Marc Strickert, Ivo Grosse:
Dispom: a Discriminative de-novo Motif Discovery Tool Based on the Jstacs Library. J. Bioinform. Comput. Biol. 11(1) (2013) - [c11]Ioana M. Lemnian, Ralf Eggeling, Ivo Grosse:
Extended Sunflower Hidden Markov Models for the recognition of homotypic cis-regulatory modules}. GCB 2013: 101-109 - [c10]Ralf Eggeling, André Gohr, Pierre-Yves Bourguignon, Edgar Wingender, Ivo Grosse:
Inhomogeneous Parsimonious Markov Models. ECML/PKDD (1) 2013: 321-336 - [i1]Victor Bellon, Jesús Cerquides, Ivo Grosse:
Bayesian Conditional Gaussian Network Classifiers with Applications to Mass Spectra Classification. CoRR abs/1308.6181 (2013) - 2012
- [j18]Martin Reczko, Manolis Maragkakis, Panagiotis Alexiou, Ivo Grosse, Artemis G. Hatzigeorgiou:
Functional microRNA targets in protein coding sequences. Bioinform. 28(6): 771-776 (2012) - [j17]Jan Grau, Jens Keilwagen, André Gohr, Berit Haldemann, Stefan Posch, Ivo Grosse:
Jstacs: A Java Framework for Statistical Analysis and Classification of Biological Sequences. J. Mach. Learn. Res. 13: 1967-1971 (2012) - [j16]Michael Seifert, André Gohr, Marc Strickert, Ivo Grosse:
Parsimonious Higher-Order Hidden Markov Models for Improved Array-CGH Analysis with Applications to Arabidopsis thaliana. PLoS Comput. Biol. 8(1) (2012) - 2011
- [j15]Michael Seifert, Marc Strickert, Alexander Schliep, Ivo Grosse:
Exploiting prior knowledge and gene distances in the analysis of tumor expression profiles with extended Hidden Markov Models. Bioinform. 27(12): 1645-1652 (2011) - [j14]Jens Keilwagen, Jan Grau, Ivan A. Paponov, Stefan Posch, Marc Strickert, Ivo Grosse:
De-Novo Discovery of Differentially Abundant Transcription Factor Binding Sites Including Their Positional Preference. PLoS Comput. Biol. 7(2) (2011) - 2010
- [j13]Jens Keilwagen, Jan Grau, Stefan Posch, Marc Strickert, Ivo Grosse:
Unifying generative and discriminative learning principles. BMC Bioinform. 11: 98 (2010) - [j12]Jens Keilwagen, Jan Grau, Stefan Posch, Ivo Grosse:
Apples and oranges: avoiding different priors in Bayesian DNA sequence analysis. BMC Bioinform. 11: 149 (2010) - [j11]Panagiotis Alexiou, Thanasis Vergoulis, Martin Gleditzsch, George Prekas, Theodore Dalamagas, Molly Megraw, Ivo Grosse, Timos K. Sellis, Artemis G. Hatzigeorgiou:
miRGen 2.0: a database of microRNA genomic information and regulation. Nucleic Acids Res. 38(Database-Issue): 137-141 (2010) - [c9]Jan Grau, Daniel Arend, Ivo Grosse, Artemis G. Hatzigeorgiou, Jens Keilwagen, Manolis Maragkakis, Claus Weinholdt, Stefan Posch:
Predicting miRNA targets utilizing an Extended Profile HMM. GCB 2010: 81-91
2000 – 2009
- 2009
- [j10]Michael Seifert, Jens Keilwagen, Marc Strickert, Ivo Grosse:
Utilizing gene pair orientations for HMM-based analysis of promoter array ChIP-chip data. Bioinform. 25(16): 2118-2125 (2009) - [c8]Michael Seifert, Ali Banaei, Jens Keilwagen, Michael Florian Mette, Andreas Houben, François Roudier, Vincent Colot, Ivo Grosse, Marc Strickert:
Array-based Genome Comparison of Arabidopsis Ecotypes using Hidden Markov Models. BIOSIGNALS 2009: 3-11 - [e1]Ivo Grosse, Steffen Neumann, Stefan Posch, Falk Schreiber, Peter F. Stadler:
German Conference on Bioinformatics 2009, 28th to 30th September 2009, Martin Luther University Halle-Wittenberg, Germany. LNI P-157, GI 2009, ISBN 978-3-88579-251-2 [contents] - 2008
- [c7]Michael Seifert, Jens Keilwagen, Marc Strickert, Ivo Grosse:
Utilizing Promoter Pair Orientations for HMM-based Analysis of ChIP-chip Data. German Conference on Bioinformatics 2008: 116-127 - 2007
- [j9]Stefan Posch, Jan Grau, André Gohr, Irad E. Ben-Gal, Alexander E. Kel, Ivo Grosse:
Recognition of cis-Regulatory Elements with Vombat. J. Bioinform. Comput. Biol. 5(2b): 561-577 (2007) - [j8]Christian Künne, Ivo Grosse, Inge Matthies, Uwe Scholz, Tatjana Sretenovic-Rajicic, Nils Stein, Andreas Stephanik, Burkhard Steuernagel, Stephan Weise:
Using Data Warehouse Technology in Crop Plant Bioinformatics. J. Integr. Bioinform. 4(1) (2007) - [c6]Jan Grau, Jens Keilwagen, Alexander E. Kel, Ivo Grosse, Stefan Posch:
Supervised Posteriors for DNA-motif Classification. German Conference on Bioinformatics 2007: 123-134 - [c5]Jan Grau, Jens Keilwagen, Ivo Grosse, Stefan Posch:
On the relevance of model orders to discriminative learning of Markov models. LWA 2007: 61-66 - [c4]Jens Keilwagen, Jan Grau, Stefan Posch, Ivo Grosse:
Recognition of splice sites using maximum conditional likelihood. LWA 2007: 67-72 - 2006
- [j7]Stephan Weise, Ivo Grosse, Christian Klukas, Dirk Koschützki, Uwe Scholz, Falk Schreiber, Björn H. Junker:
Meta-All: a system for managing metabolic pathway information. BMC Bioinform. 7: 465 (2006) - [j6]Jan Grau, Irad E. Ben-Gal, Stefan Posch, Ivo Grosse:
VOMBAT: prediction of transcription factor binding sites using variable order Bayesian trees. Nucleic Acids Res. 34(Web-Server-Issue): 529-533 (2006) - [c3]Sven Mielordt, Ivo Grosse, Jürgen Kleffe:
Data Structures for Genome Annotation, Alternative Splicing, and Validation. DILS 2006: 114-123 - 2005
- [j5]Irad E. Ben-Gal, Ayala Shani, André Gohr, Jan Grau, S. Arviv, Armin Shmilovici, Stefan Posch, Ivo Grosse:
Identification of transcription factor binding sites with variable-order Bayesian networks. Bioinform. 21(11): 2657-2666 (2005) - [j4]Christian Künne, Matthias Lange, T. Funke, H. Miehe, Thomas Thiel, Ivo Grosse, Uwe Scholz:
CR-EST: a resource for crop ESTs. Nucleic Acids Res. 33(Database-Issue): 619-621 (2005) - 2004
- [j3]Wentian Li, Ivo Grosse:
Comments on "linguistic features in eukaryotic genomes". Complex. 9(4): 10-11 (2004) - [j2]Wentian Li, Fengzhu Sun, Ivo Grosse:
Extreme Value Distribution Based Gene Selection Criteria for Discriminant Microarray Data Analysis Using Logistic Regression. J. Comput. Biol. 11(2/3): 215-226 (2004) - 2003
- [c2]Wentian Li, Ivo Grosse:
Gene selection criterion for discriminant microarray data analysis based on extreme value distributions. RECOMB 2003: 217-223 - 2002
- [j1]Wentian Li, Pedro Bernaola-Galván, Fatameh Haghighi, Ivo Grosse:
Applications of Recursive Segmentation to the Analysis of DNA Sequences. Comput. Chem. 26(5): 491-510 (2002)
1990 – 1999
- 1997
- [c1]Patrick Hoffman, Georges G. Grinstein, Kenneth A. Marx, Ivo Grosse, Eugene Stanley:
DNA visual and analytic data mining. IEEE Visualization 1997: 437-442
Coauthor Index
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