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Books and Theses
- 1996
[b1]Martin Reczko:
Künstliche neuronale Netzwerke in der Molekularbiologie. Universität Stuttgart, 1996, pp. 1-112
Journal Articles
- 2013
- [j20]Maria D. Paraskevopoulou, Georgios K. Georgakilas
, Nikos Kostoulas, Martin Reczko, Manolis Maragkakis, Theodore M. Dalamagas, Artemis G. Hatzigeorgiou:
DIANA-LncBase: experimentally verified and computationally predicted microRNA targets on long non-coding RNAs. Nucleic Acids Res. 41(Database-Issue): 239-245 (2013) - [j19]Maria D. Paraskevopoulou, Georgios K. Georgakilas, Nikos Kostoulas, Ioannis S. Vlachos, Thanasis Vergoulis, Martin Reczko, Christos Filippidis, Theodore Dalamagas, Artemis G. Hatzigeorgiou:
DIANA-microT web server v5.0: service integration into miRNA functional analysis workflows. Nucleic Acids Res. 41(Webserver-Issue): 169-173 (2013) - 2012
- [j18]Martin Reczko, Manolis Maragkakis, Panagiotis Alexiou, Ivo Grosse, Artemis G. Hatzigeorgiou:
Functional microRNA targets in protein coding sequences. Bioinform. 28(6): 771-776 (2012) - [j17]Thanasis Vergoulis, Ioannis S. Vlachos, Panagiotis Alexiou, George Georgakilas, Manolis Maragkakis, Martin Reczko, Stefanos Gerangelos, Nectarios Koziris, Theodore Dalamagas, Artemis G. Hatzigeorgiou:
TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support. Nucleic Acids Res. 40(Database-Issue): 222-229 (2012) - [j16]Ioannis S. Vlachos, Nikos Kostoulas, Thanasis Vergoulis, Georgios K. Georgakilas, Martin Reczko, Manolis Maragkakis, Maria D. Paraskevopoulou, Kostantinos Prionidis, Theodore Dalamagas, Artemis G. Hatzigeorgiou:
DIANA miRPath v.2.0: investigating the combinatorial effect of microRNAs in pathways. Nucleic Acids Res. 40(Web-Server-Issue): 498-504 (2012) - 2011
- [j15]Eleftheria Tzamali, Panayiota Poirazi, Ioannis G. Tollis, Martin Reczko:
A computational exploration of bacterial metabolic diversity identifying metabolic interactions and growth-efficient strain communities. BMC Syst. Biol. 5: 167 (2011) - [j14]Manolis Maragkakis, Thanasis Vergoulis, Panagiotis Alexiou, Martin Reczko, Kyriaki Plomaritou, Mixail Gousis, Kornilios Kourtis, Nectarios Koziris, Theodore Dalamagas, Artemis G. Hatzigeorgiou:
DIANA-microT Web server upgrade supports Fly and Worm miRNA target prediction and bibliographic miRNA to disease association. Nucleic Acids Res. 39(Web-Server-Issue): 145-148 (2011) - 2010
- [j13]Eleftheria Kyriaki Pissadaki, Kyriaki Sidiropoulou, Martin Reczko, Panayiota Poirazi:
Encoding of Spatio-Temporal Input Characteristics by a CA1 Pyramidal Neuron Model. PLoS Comput. Biol. 6(12) (2010) - 2009
- [j12]Giorgos L. Papadopoulos, Panagiotis Alexiou, Manolis Maragkakis, Martin Reczko, Artemis G. Hatzigeorgiou:
DIANA-mirPath: Integrating human and mouse microRNAs in pathways. Bioinform. 25(15): 1991-1993 (2009) - [j11]Panagiotis Alexiou, Manolis Maragkakis, Giorgos L. Papadopoulos, Martin Reczko, Artemis G. Hatzigeorgiou:
Lost in translation: an assessment and perspective for computational microRNA target identification. Bioinform. 25(23): 3049-3055 (2009) - [j10]Manolis Maragkakis, Panagiotis Alexiou, Giorgos L. Papadopoulos, Martin Reczko, Theodore Dalamagas, Giorgos Giannopoulos, George I. Goumas, Evangelos Koukis, Kornilios Kourtis, Victor A. Simossis, Praveen Sethupathy, Thanasis Vergoulis, Nectarios Koziris, Timos K. Sellis, Panayotis Tsanakas, Artemis G. Hatzigeorgiou:
Accurate microRNA target prediction correlates with protein repression levels. BMC Bioinform. 10: 295 (2009) - [j9]Giorgos L. Papadopoulos, Martin Reczko, Victor A. Simossis, Praveen Sethupathy, Artemis G. Hatzigeorgiou:
The database of experimentally supported targets: a functional update of TarBase. Nucleic Acids Res. 37(Database-Issue): 155-158 (2009) - [j8]Manolis Maragkakis, Martin Reczko, Victor A. Simossis, Panagiotis Alexiou, Giorgos L. Papadopoulos, Theodore Dalamagas, Giorgos Giannopoulos, Georgios I. Goumas, Evangelos Koukis, Kornilios Kourtis, Thanasis Vergoulis, Nectarios Koziris, Timos K. Sellis, Panayotis Tsanakas, Artemis G. Hatzigeorgiou:
DIANA-microT web server: elucidating microRNA functions through target prediction. Nucleic Acids Res. 37(Web-Server-Issue): 273-276 (2009) - [j7]Anastasis Oulas, Martin Reczko, Panayiota Poirazi:
MicroRNAs and Cancer - The Search Begins! IEEE Trans. Inf. Technol. Biomed. 13(1): 67-77 (2009) - 2007
- [j6]Trias Thireou, Martin Reczko:
Bidirectional Long Short-Term Memory Networks for Predicting the Subcellular Localization of Eukaryotic Proteins. IEEE ACM Trans. Comput. Biol. Bioinform. 4(3): 441-446 (2007) - 2001
- [j5]Artemis G. Hatzigeorgiou, Petko Fiziev, Martin Reczko:
DIANA-EST: a statistical analysis. Bioinform. 17(10): 913-919 (2001) - [j4]Martin Reczko, Dimitris A. Karras, Basil G. Mertzios, Danielle Graveron-Demilly, Dirk van Ormondt:
Improved MR image reconstruction from sparsely sampled scans based on neural networks. Pattern Recognit. Lett. 22(1): 35-46 (2001) - 2000
- [j3]Christian Derst, Martin Reczko, Artemis G. Hatzigeorgiou:
Prediction of human transnational initiation sites using a multiple neural network approach. Int. J. Comput. Syst. Signals 1(2): 169-179 (2000) - 1997
- [j2]Martin Reczko, Dimitris A. Karras, Henrik Bohr:
An update of the DEF database of protein fold class predictions. Nucleic Acids Res. 25(1): 235 (1997) - 1995
- [j1]Martin Reczko, Artemis G. Hatzigeorgiou, Niels Mache, Andreas Zell, Sándor Suhai:
A parallel neural network simulator on the connection machine CM-5. Comput. Appl. Biosci. 11(3): 309-315 (1995)
Conference and Workshop Papers
- 2024
- [c14]Dimitra N. Panou, Alexandros C. Dimopoulos, Martin Reczko:
Farming Open LLMs for Biomedical Question Answering. CLEF (Working Notes) 2024: 188-196 - 2023
- [c13]Dimitra N. Panou, Martin Reczko:
Semi-supervised training for biomedical question answering. CLEF (Working Notes) 2023: 152-158 - 2022
- [c12]Martin Reczko:
ELECTROLBERT: Combining Replaced Token Detection and Sentence Order Prediction. CLEF (Working Notes) 2022: 335-340 - 2021
- [c11]Thanasis Vergoulis, Konstantinos Zagganas, Loukas Kavouras, Martin Reczko, Stelios Sartzetakis, Theodore Dalamagas:
SCHeMa: Scheduling Scientific Containers on a Cluster of Heterogeneous Machines. SSDBM 2021: 243-247 - 2008
- [c10]Eleftheria Tzamali, Martin Reczko:
The benefit of cooperation: Identifying growth-efficient interacting strains of Escherichia coli using metabolic flux balance models. BIBE 2008: 1-6 - 2006
- [c9]Karol Szafranski, Molly Megraw, Martin Reczko, Artemis G. Hatzigeorgiou:
Support Vector Machines for Predicting microRNA Hairpins. BIOCOMP 2006: 270-276 - [c8]Alkiviadis Symeonidis, Ioannis G. Tollis, Martin Reczko:
Visualization of Functional Aspects of microRNA Regulatory Networks Using the Gene Ontology. ISBMDA 2006: 13-24 - 2005
- [c7]Adam Arvelakis, Martin Reczko, Alexandros Stamatakis, Alkiviadis Symeonidis, Ioannis G. Tollis:
Using Treemaps to Visualize Phylogenetic Trees. ISBMDA 2005: 283-293 - 2002
- [c6]Martin Reczko, Petko Fiziev, Eike Staub, Artemis G. Hatzigeorgiou:
Finding Signal Peptides in Human Protein Sequences Using Recurrent Neural Networks. WABI 2002: 60-67 - 2000
- [c5]Dimitris A. Karras, Martin Reczko, Basil G. Mertzios, Danielle Graveron-Demilly, Dirk van Ormondt:
MR Image Reconstruction from Sparsely Sampled Scans Based on Multilayer Perceptrons and Using Regularization Techniques. IJCNN (1) 2000: 336-341 - 1999
- [c4]Artemis G. Hatzigeorgiou, Martin Reczko:
Feature recognition on expressed sequence tags of human DNA. IJCNN 1999: 3490-3493 - [c3]Janet Grassmann, Martin Reczko, Sándor Suhai, Lutz Edler:
Protein Fold Class Prediction: New Methods of Statistical Classification. ISMB 1999: 106-112 - [c2]Martin Reczko, Dimitris A. Karras, V. Mertzios, Danielle Graveron-Demilly, Dirk van Ormondt:
Neural Networks in MR Image Estimation from Sparsely Sampled Scans. MLDM 1999: 75-86 - 1996
- [c1]Niels Mache, Paul Levi, Artemis G. Hatzigeorgiou, Martin Reczko:
Detection of Eukaryotic POL II Promoters with Multi-State Time-Delay Neural Networks. German Conference on Bioinformatics 1996: 264-267
Informal and Other Publications
- 2021
- [i4]Thanasis Vergoulis, Konstantinos Zagganas, Loukas Kavouras, Martin Reczko, Stelios Sartzetakis, Theodore Dalamagas:
SCHeMa: Scheduling Scientific Containers on a Cluster of Heterogeneous Machines. CoRR abs/2103.13138 (2021) - 2020
- [i3]Dimitra N. Panou, Martin Reczko:
DeepFoldit - A Deep Reinforcement Learning Neural Network Folding Proteins. CoRR abs/2011.03442 (2020) - 2017
- [i2]Merlijn N. van Rijswijk, Charlie Beirnaert, Christophe Caron, Marta Cascante, Victoria Dominguez Del Angel, Warwick B. Dunn, Timothy M. D. Ebbels, Franck Giacomoni, Alejandra N. González-Beltrán, Thomas Hankemeier, Kenneth Haug, Jose L. Izquierdo-García, Rafael C. Jiménez, Fabien Jourdan, Namrata Kale, Maria I. Klapa, Oliver Kohlbacher, Kairi Koort, Kim Kultima, Gildas Le Corguillé, Nicholas K. Moschonas, Steffen Neumann, Claire O'Donovan, Martin Reczko, Philippe Rocca-Serra, Antonio Rosato, Reza M. Salek, Susanna-Assunta Sansone, Venkata P. Satagopam, Daniel Schober, Ruth Shimmo, Rachel A. Spicer, Ola Spjuth, Etienne A. Thévenot, Mark R. Viant, Ralf J. M. Weber, Egon L. Willighagen, Gianluigi Zanetti, Christoph Steinbeck:
The future of metabolomics in ELIXIR. F1000Research 6: 1649- (2017) - 2007
- [i1]Martin Reczko, Panayiota Poirazi, Anastasis Oulas, Eleftheria Tzamali, Maria Manioudaki, Vassilis Tsiaras, Ioannis G. Tollis:
The Impact of Systems Biology on the Digital Patient. ERCIM News 2007(69) (2007)
Coauthor Index
aka: Theodore M. Dalamagas
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