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ORCIDJill P. Mesirov
Person information
- affiliation: MIT, USA
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Journal Articles
- 2023
[j23]James T. Robinson, Helga Thorvaldsdóttir, Douglass Turner, Jill P. Mesirov:
igv.js: an embeddable JavaScript implementation of the Integrative Genomics Viewer (IGV). Bioinform. 39(1) (2023)- 2015
- [j22]Yarden Katz, Eric T. Wang
, Jacob Silterra, Schraga Schwartz, Bang Wong, Helga Thorvaldsdóttir, James T. Robinson, Jill P. Mesirov, Edoardo M. Airoldi, Christopher B. Burge:
Quantitative visualization of alternative exon expression from RNA-seq data. Bioinform. 31(14): 2400-2402 (2015) - 2013
- [j21]Helga Thorvaldsdóttir, James T. Robinson, Jill P. Mesirov:
Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration. Briefings Bioinform. 14(2): 178-192 (2013) - [j20]Josef Spidlen, Aaron Barsky, Karin Breuer, Peter Carr, Marc-Danie Nazaire, Barbara A. Hill, Yu Qian, Ted Liefeld, Michael Reich, Jill P. Mesirov, Peter Wilkinson, Richard H. Scheuermann, Rafick-Pierre Sekaly, Ryan Remy Brinkman:
GenePattern Flow Cytometry Suite. Source Code Biol. Medicine 8: 14 (2013) - 2012
- [j19]Liming Lai, Arthur Liberzon, Jason Hennessey, Gaixin Jiang, Jianli Qi, Jill P. Mesirov, Steven X. Ge:
AraPath: a knowledgebase for pathway analysis in Arabidopsis. Bioinform. 28(17): 2291-2292 (2012) - 2011
- [j18]Arthur Liberzon, Aravind Subramanian, Reid Pinchback, Helga Thorvaldsdóttir, Pablo Tamayo, Jill P. Mesirov:
Molecular signatures database (MSigDB) 3.0. Bioinform. 27(12): 1739-1740 (2011) - 2008
- [j17]Michal Linial, Jill P. Mesirov, B. J. Morrison McKay, Burkhard Rost:
ISMB 2008 Toronto. PLoS Comput. Biol. 4(6) (2008) - 2007
- [j16]Aravind Subramanian, Heidi Kuehn, Joshua Gould, Pablo Tamayo, Jill P. Mesirov:
GSEA-P: a desktop application for Gene Set Enrichment Analysis. Bioinform. 23(23): 3251-3253 (2007) - [j15]Gul S. Dalgin, Gabriela Alexe, Daniel Scanfeld, Pablo Tamayo, Jill P. Mesirov, Shridar Ganesan, Charles DeLisi, Gyan Bhanot:
Portraits of breast cancer progression. BMC Bioinform. 8 (2007) - 2006
- [j14]Reinhard Engels, Tamara Yu, Christopher B. Burge, Jill P. Mesirov, David DeCaprio, James E. Galagan:
Combo: a whole genome comparative browser. Bioinform. 22(14): 1782-1783 (2006) - [j13]Joshua Gould, Gad Getz, Stefano Monti, Michael Reich, Jill P. Mesirov:
Comparative gene marker selection suite. Bioinform. 22(15): 1924-1925 (2006) - 2005
- [j12]Tarjei S. Mikkelsen, James E. Galagan, Jill P. Mesirov:
Improving genome annotations using phylogenetic profile anomaly detection. Bioinform. 21(4): 464-470 (2005) - [j11]Ted Liefeld, Michael Reich, Joshua Gould, Peili Zhang, Pablo Tamayo, Jill P. Mesirov:
GeneCruiser: a web service for the annotation of microarray data. Bioinform. 21(18): 3681-3682 (2005) - 2004
- [j10]Michael Reich, K. Ohm, Michael Angelo, Pablo Tamayo, Jill P. Mesirov:
GeneCluster 2.0: an advanced toolset for bioarray analysis. Bioinform. 20(11): 1797-1798 (2004) - 2003
- [j9]Sayan Mukherjee, Pablo Tamayo, Simon Rogers, Ryan M. Rifkin, Anna Engle, Colin Campbell, Todd R. Golub, Jill P. Mesirov:
Estimating Dataset Size Requirements for Classifying DNA Microarray Data. J. Comput. Biol. 10(2): 119-142 (2003) - [j8]Stefano Monti, Pablo Tamayo, Jill P. Mesirov, Todd R. Golub:
Consensus Clustering: A Resampling-Based Method for Class Discovery and Visualization of Gene Expression Microarray Data. Mach. Learn. 52(1-2): 91-118 (2003) - [j7]Ryan M. Rifkin, Sayan Mukherjee, Pablo Tamayo, Sridhar Ramaswamy, Chen-Hsiang Yeang, Michael Angelo, Michael Reich, Tomaso A. Poggio, Eric S. Lander, Todd R. Golub, Jill P. Mesirov:
An Analytical Method for Multiclass Molecular Cancer Classification. SIAM Rev. 45(4): 706-723 (2003) - 1999
- [j6]Jill P. Mesirov, Donna K. Slonim:
Computational biology. Comput. Sci. Eng. 1(3): 16-17 (1999) - 1995
- [j5]Mike McKenna, Jill P. Mesirov, Stavros A. Zenios:
Data Parallel Quadratic Programming on Box-Constrained Problems. SIAM J. Optim. 5(3): 570-589 (1995) - 1994
- [j4]Jean-Philippe Brunet, Alan Edelman, Jill P. Mesirov:
Erratum: Hypercube Algorithms for Direct N-Body Solvers for Different Granularities. SIAM J. Sci. Comput. 15(1): 238 (1994) - 1993
- [j3]Jean-Philippe Brunet, Jill P. Mesirov, Alan Edelman:
Hypercube Algorithms for Direct N-Body Solvers for Different Granularities. SIAM J. Sci. Comput. 14(5): 1143-1158 (1993) - 1990
- [j2]Xiru Zhang, Michael McKenna, Jill P. Mesirov, David L. Waltz:
The backpropagation algorithm on grid and hypercube architectures. Parallel Comput. 14(3): 317-327 (1990) - 1989
- [j1]Eric S. Lander, Jill P. Mesirov, Washington Taylor:
Study of protein sequence comparison metrics on the connection machine CM-2. J. Supercomput. 3(4): 255-269 (1989)
Conference and Workshop Papers
- 2019
- [c11]Steven E. Brenner, Martha L. Bulyk, Dana C. Crawford, Jill P. Mesirov, Alexander A. Morgan, Predrag Radivojac:
Session introduction. PSB 2019: 220-223 - 2010
- [c10]Saumyadipta Pyne, Xinli Hu, Kui Wang, Elizabeth Rossin, Tsung-I Lin, Lisa Maier, Clare Baecher-Allan, Geoffrey J. McLachlan, Pablo Tamayo, David Hafler, Philip L. De Jager, Jill P. Mesirov:
Automated High-Dimensional Flow Cytometric Data Analysis. RECOMB 2010: 577 - 2001
- [c9]Chen-Hsiang Yeang, Sridhar Ramaswamy, Pablo Tamayo, Sayan Mukherjee, Ryan M. Rifkin, Michael Angelo, Michael Reich, Eric S. Lander, Jill P. Mesirov, Todd R. Golub:
Molecular classification of multiple tumor types. ISMB (Supplement of Bioinformatics) 2001: 316-322 - 2000
- [c8]Serafim Batzoglou, Bonnie Berger, Jill P. Mesirov, Eric S. Lander:
Sequencing a genome by walking with clone-end sequences: a mathematical analysis (abstract). RECOMB 2000: 45 - [c7]Serafim Batzoglou, Lior Pachter, Jill P. Mesirov, Bonnie Berger, Eric S. Lander:
Human and mouse gene structure: comparative analysis and application to exon prediction. RECOMB 2000: 46-53 - [c6]Donna K. Slonim, Pablo Tamayo, Jill P. Mesirov, Todd R. Golub, Eric S. Lander:
Class prediction and discovery using gene expression data. RECOMB 2000: 263-272 - 1991
- [c5]James A. Sethian, Jean-Philippe Brunet, Adam Greenberg, Jill P. Mesirov:
Computing turbulent flow in complex geometries on a massively parallel processor. SC 1991: 230-241 - [c4]Pablo Tamayo, Jill P. Mesirov, Bruce M. Boghosian:
Parallel approaches to short range molecular dynamics simulations. SC 1991: 462-470 - 1990
- [c3]Jean-Philippe Brunet, Alan Edelman, Jill P. Mesirov:
An optional hypercube direct N-body solver on the connection machine. SC 1990: 748-752 - 1989
- [c2]Xiru Zhang, Michael McKenna, Jill P. Mesirov, David L. Waltz:
An Efficient Implementation of the Back-propagation Algorithm on the Connection Machine CM-2. NIPS 1989: 801-809 - [c1]Xiru Zhang, David L. Waltz, Jill P. Mesirov:
Protein structure prediction by a data-level parallel algorithm. SC 1989: 215-223
Editorship
- 2005
- [e1]Satoru Miyano, Jill P. Mesirov, Simon Kasif, Sorin Istrail, Pavel A. Pevzner, Michael S. Waterman:
Research in Computational Molecular Biology, 9th Annual International Conference, RECOMB 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings. Lecture Notes in Computer Science 3500, Springer 2005, ISBN 3-540-25866-3 [contents]
Informal and Other Publications
- 2018
- [i5]Clarence K. Mah, Thorin Tabor, Jill P. Mesirov:
An accessible, interactive GenePattern Notebook for analysis and exploration of single-cell transcriptomic data. F1000Research 7: 1306 (2018) - 2017
- [i4]Daniel E. Carlin, Kassi Kosnicki, Sara Garamszegi, Trey Ideker, Helga Thorvaldsdóttir, Michael Reich, Jill P. Mesirov:
A multi-tool recipe to identify regions of protein-DNA binding and their influence on associated gene expression. F1000Research 6: 784- (2017) - 2015
- [i3]Yan Tan, Felix Wu, Pablo Tamayo, W. Nicholas Haining, Jill P. Mesirov:
Constellation Map: Downstream visualization and interpretation of gene set enrichment results. F1000Research 4: 167 (2015) - 2014
- [i2]Barry Demchak, Tim Hull, Michael Reich, Ted Liefeld, Michael E. Smoot, Trey Ideker, Jill P. Mesirov:
Cytoscape: the network visualization tool for GenomeSpace workflows. F1000Research 3: 151 (2014) - 2012
- [i1]Fabien Campagne, Kevin C. Dorff, Nyasha Chambwe, James T. Robinson, Jill P. Mesirov, Thomas D. Wu:
Compression of structured high-throughput sequencing data. CoRR abs/1211.6664 (2012)
Coauthor Index
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