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2020 – today
- 2024
[j18]Chenjie Zeng
, David J. Schlueter, Tam C. Tran, Anav Babbar, Thomas Cassini, Lisa Bastarache, Joshua C. Denny:
Comparison of phenomic profiles in the All of Us Research Program against the US general population and the UK Biobank. J. Am. Medical Informatics Assoc. 31(4): 846-854 (2024)- [j17]Cathy Shyr, Yan Hu, Lisa Bastarache, Alex Cheng, Rizwan Hamid, Paul A. Harris, Hua Xu:
Identifying and Extracting Rare Diseases and Their Phenotypes with Large Language Models. J. Heal. Informatics Res. 8(2): 438-461 (2024) - 2023
- [j16]Megan M. Shuey, William W. Stead, Ida Aka, April L. Barnado, Lisa Bastarache, Elly Brokamp, Meredith Campbell, Robert J. Carroll, Jeffrey A. Goldstein, Adam Lewis, Beth A. Malow, Jonathan D. Mosley, Travis Osterman, Dolly A Padovani-Claudio, Andrea Ramirez, Dan M. Roden, Bryce A Schuler, Edward Siew, Jennifer Sucre, Isaac Thomsen, Rory J. Tinker, Sara Van Driest, Colin Walsh, Jeremy L. Warner, Quinn Stanton Wells, Lee E. Wheless:
Next-generation phenotyping: introducing phecodeX for enhanced discovery research in medical phenomics. Bioinform. 39(10) (2023) - [j15]William W. Stead, Adam Lewis, Nunzia B. Giuse, Taneya Y. Koonce, Lisa Bastarache:
Knowledgebase strategies to aid interpretation of clinical correlation research. J. Am. Medical Informatics Assoc. 30(7): 1257-1265 (2023) - [j14]David J. Schlueter, Lina M. Sulieman, Huan Mo, Jacob M. Keaton, Tracey M. Ferrara, Ariel Williams, Jun Qian, Onajia J. Stubblefield, Chenjie Zeng, Tam C. Tran, Lisa Bastarache, Jian Dai, Anav Babbar, Andrea H. Ramirez, Slavina Goleva, Joshua C. Denny:
Systematic replication of smoking disease associations using survey responses and EHR data in the All of Us Research Program. J. Am. Medical Informatics Assoc. 31(1): 139-153 (2023) - 2022
- [j13]Rebecca Irlmeier, Jacob J. Hughey, Lisa Bastarache, Joshua C. Denny, Qingxia Chen:
Cox regression is robust to inaccurate EHR-extracted event time: an application to EHR-based GWAS. Bioinform. 38(8): 2297-2306 (2022) - [j12]Layla Aref, Lisa Bastarache, Jacob J. Hughey:
The phers R package: using phenotype risk scores based on electronic health records to study Mendelian disease and rare genetic variants. Bioinform. 38(21): 4972-4974 (2022) - [j11]Ken Wiley, Laura Findley, Madison Goldrich, Tejinder K. Rakhra-Burris, Ana Stevens, Pamela Williams, Carol J. Bult, Rex L. Chisholm, Patricia Deverka, Geoffrey S. Ginsburg, Eric D. Green, Gail P. Jarvik, George A. Mensah, Erin Ramos, Mary V. Relling, Dan M. Roden, Robb Rowley, Gil Alterovitz, Samuel J. Aronson, Lisa Bastarache, James J. Cimino, Erin L. Crowgey, Guilherme Del Fiol, Robert R. Freimuth, Mark A. Hoffman, Janina M. Jeff, Kevin B. Johnson, Kensaku Kawamoto, Subha Madhavan, Eneida A. Mendonça, Lucila Ohno-Machado, Siddharth Pratap, Casey Overby Taylor, Marylyn D. Ritchie, Nephi Walton, Chunhua Weng, Teresa Zayas-Cabán, Teri A. Manolio, Marc S. Williams:
A research agenda to support the development and implementation of genomics-based clinical informatics tools and resources. J. Am. Medical Informatics Assoc. 29(8): 1342-1349 (2022) - [c20]Layla Aref, Lisa Bastarache, Jake Hughey:
The PheRS R package: Phenotype risk score generation and analysis tool using electronic health record data. AMIA 2022 - 2021
- [j10]Subha Madhavan, Lisa Bastarache, Jeffrey S. Brown, Atul J. Butte, David A. Dorr, Peter J. Embí, Charles P. Friedman, Kevin B. Johnson, Jason H. Moore, Isaac S. Kohane, Philip R. O. Payne, Jessica D. Tenenbaum, Mark G. Weiner, Adam B. Wilcox, Lucila Ohno-Machado:
Use of electronic health records to support a public health response to the COVID-19 pandemic in the United States: a perspective from 15 academic medical centers. J. Am. Medical Informatics Assoc. 28(2): 393-401 (2021) - [j9]Sarah DeLozier, Sarah Bland, Melissa McPheeters, Quinn Stanton Wells, Eric Farber-Eger, Cosmin Adrian Bejan, Daniel Fabbri, S. Trent Rosenbloom, Dan M. Roden, Kevin B. Johnson, Wei-Qi Wei, Josh F. Peterson, Lisa Bastarache:
Phenotyping coronavirus disease 2019 during a global health pandemic: Lessons learned from the characterization of an early cohort. J. Biomed. Informatics 117: 103777 (2021) - [c19]Sarah DeLozier, Josh F. Peterson, Joshua C. Denny, Lisa Bastarache:
Using Genomic Association Replication Rates as an EHR Quality Measure via the Phenotype-Genotype Reference Map (PGRM). AMIA 2021 - [c18]Spiros C. Denaxas, Ge Liu, QiPing Feng, Ghazaleh Fatemifar, Lisa Bastarache, Vern Eric Kerchberger, Aroon D. Hingorani, R. Tom Lumbers, Josh F. Peterson, Wei-Qi Wei, Harry Hemingway:
Mapping the Read2/CTV3 controlled clinical terminologies to Phecodes in UK Biobank primary care electronic health records: implementation and evaluation. AMIA 2021 - [c17]David J. Schlueter, Lina M. Sulieman, Jacob M. Keaton, Tracey Ferrara, Kyle Webb, Ariel Williams, Francis Ratsimbazafy, Jun Qian, Lisa Bastarache, Andrea H. Ramirez, Joshua C. Denny:
Systematic replication of smoking disease associations in the All of Us Research Program. AMIA 2021 - 2020
- [c16]Leigh Anne Tang, Sarah DeLozier, Lisa Bastarache, Colin Walsh, Joshua C. Denny:
Developing a Phenotype Risk Score for Opioid Adverse Events. AMIA 2020
2010 – 2019
- 2019
- [j8]Lisa Bastarache, Jacob J. Hughey, Jeffery A. Goldstein, Julie A. Bastraache, Satya Das, Neil Charles Zaki, Chenjie Zeng, Leigh Anne Tang, Dan M. Roden, Joshua C. Denny:
Improving the phenotype risk score as a scalable approach to identifying patients with Mendelian disease. J. Am. Medical Informatics Assoc. 26(12): 1437-1447 (2019) - 2018
- [c15]Jeremy L. Warner, Guergana Savova, Noemie Elhadad, Lisa Bastarache, David Gotz:
Computable Longitudinal Patient Trajectories. AMIA 2018 - 2017
- [j7]Pedro L. Teixeira, Wei-Qi Wei, Robert M. Cronin, Huan Mo, Jacob P. VanHouten, Robert J. Carroll, Eric LaRose, Lisa Bastarache, S. Trent Rosenbloom, Todd L. Edwards, Dan M. Roden, Thomas A. Lasko, Richard A. Dart, Anne M. Nikolai, Peggy L. Peissig, Joshua C. Denny:
Evaluating electronic health record data sources and algorithmic approaches to identify hypertensive individuals. J. Am. Medical Informatics Assoc. 24(1): 162-171 (2017) - [c14]Jamie R. Robinson, Lisa Bastarache, Robert J. Carroll, Elizabeth A. Scoville, David A. Schwartz, Joshua C. Denny:
Sub-Phenotyping of Crohn's Disease Using a Large Electronic Record Cohort. AMIA 2017 - [c13]Jamie R. Robinson, Zongyang Mou, Lisa Bastarache, Wei-Qi Wei, Robert J. Carroll, Joshua C. Denny:
Association of BMI and Obesity Genetic Risk Score with Surgical Procedures Through a Procedure-wide Association Study. AMIA 2017 - 2015
- [c12]Yaomin Xu, Todd L. Edwards, Lisa Bastarache, Rebecca N. Jerome, Shilin Zho, Eric Torstenson, Wei-Qi Wei, Jana Shirey-Rice, Erica A. Bowton, Yu Shyr, Jill M. Pulley, Joshua C. Denny:
PheWAS Network Analysis and Visualization. AMIA 2015 - 2014
- [j6]Robert J. Carroll, Lisa Bastarache, Joshua C. Denny:
R PheWAS: data analysis and plotting tools for phenome-wide association studies in the R environment. Bioinform. 30(16): 2375-2376 (2014) - [c11]Pedro L. Teixeira, Robert J. Carroll, Lisa Bastarache, Peter Speltz, Joshua C. Smith, Joshua C. Denny:
Phenome-Wide Association Studies Using NLP-Derived Concepts. AMIA 2014 - 2013
- [j5]Wei-Qi Wei, Robert M. Cronin, Hua Xu, Thomas A. Lasko, Lisa Bastarache, Joshua C. Denny:
Development and evaluation of an ensemble resource linking medications to their indications. J. Am. Medical Informatics Assoc. 20(5): 954-961 (2013) - [c10]Lisa Bastarache, Wei-Qi Wei, Joshua C. Denny:
Classifying ICD-9 codes into meaningful disease categories: A comparison between two coding systems. AMIA 2013 - [c9]Robert J. Carroll, Lisa Bastarache, Joshua C. Denny:
Open Source R Implementation of the PheWAS Methodology. AMIA 2013 - [c8]Eugenia R. McPeek Hinz, Joshua C. Denny, Lisa Bastarache:
A Natural Language Processing Algorithm to define a Venous Thromboembolism Phenotype. AMIA 2013 - [c7]Christine M. McEvoy, Robert J. Carroll, Lisa Bastarache, Wei-Qi Wei, Joshua C. Denny:
Using PheWAS and Natural Language Processing to Discover Clinical Associations for Congenital Chest Deformities. AMIA 2013 - [c6]Wei-Qi Wei, Jonathan D. Mosley, Lisa Bastarache, Joshua C. Denny:
Validation and Enhancement of a Computable Medication Indication Resource (MEDI) Using a Large Practice-based Dataset. AMIA 2013 - 2012
- [c5]Lisa Bastarache, Wei-Qi Wei, Joshua C. Denny:
Diabetes and Susceptibility to Infection: A Study of Lab Culture Results in the EMR. AMIA 2012 - [c4]Robert J. Carroll, Katherine P. Liao, Anne E. Eyler, Lisa Bastarache, Dana C. Crawford, Peggy L. Peissig, Jyotishman Pathak, David Carrell, Abel N. Kho, Rongling Li, Daniel R. Masys, Gail P. Jarvik, Christopher G. Chute, Rex L. Chisholm, Eric B. Larson, Catherine A. McCarty, Iftikhar J. Kullo:
Using PheWAS to Assess Pleiotropy of Genetic Risk Scores for Rheumatoid Arthritis and Coronary Artery Disease in the eMERGE Network. AMIA 2012 - [c3]Wei-Qi Wei, Lisa Bastarache, Joshua C. Denny:
Comparing Diagnoses Recorded in Problem Lists vs. Administrative Codes. AMIA 2012 - [c2]Eugenia R. McPeek Hinz, Lisa Bastarache, Joshua C. Denny:
A General Purpose Phenotype Algorithm for Venous Thromboembolism Using Billing Codes and Natural Language Processing. HISB 2012: 149 - 2010
- [j4]Joshua C. Denny, Marylyn D. Ritchie, Melissa A. Basford, Jill M. Pulley, Lisa Bastarache, Kristin Brown-Gentry, Deede Wang, Daniel R. Masys, Dan M. Roden, Dana C. Crawford:
PheWAS: demonstrating the feasibility of a phenome-wide scan to discover gene-disease associations. Bioinform. 26(9): 1205-1210 (2010) - [j3]Joshua C. Denny, Josh F. Peterson, Neesha N. Choma, Hua Xu, Randolph A. Miller, Lisa Bastarache, Neeraja B. Peterson:
Extracting timing and status descriptors for colonoscopy testing from electronic medical records. J. Am. Medical Informatics Assoc. 17(4): 383-388 (2010) - [j2]Son Doan, Lisa Bastarache, Sergio Klimkowski, Joshua C. Denny, Hua Xu:
Integrating existing natural language processing tools for medication extraction from discharge summaries. J. Am. Medical Informatics Assoc. 17(5): 528-531 (2010)
2000 – 2009
- 2009
- [j1]Joshua C. Denny, Lisa Bastarache, Elizabeth Ann Sastre, Anderson Spickard III:
Tracking medical students' clinical experiences using natural language processing. J. Biomed. Informatics 42(5): 781-789 (2009) - [c1]Joshua C. Denny, Josh F. Peterson, Neesha N. Choma, Hua Xu, Randolph A. Miller, Lisa Bastarache, Neeraja B. Peterson:
Development of a Natural Language Processing System to Identify Timing and Status of Colonoscopy Testing in Electronic Medical Records. AMIA 2009
Coauthor Index
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last updated on 2024-08-05 20:20 CEST by the dblp team
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