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ORCIDShinichi Morishita
Person information
- affiliation: University of Tokyo, Japan
- affiliation (1985 - 1997): IBM Tokyo Research Laboratory, Japan
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Journal Articles
- 2023
[j38]Bansho Masutani
, Riki Kawahara, Shinichi Morishita:
Decomposing mosaic tandem repeats accurately from long reads. Bioinform. 39(4) (2023)- 2021
- [j37]Shinichi Morishita, Kazuki Ichikawa, Eugene W. Myers:
Finding long tandem repeats in long noisy reads. Bioinform. 37(5): 612-621 (2021) - [j36]Bansho Masutani, Shin-ichi Arimura, Shinichi Morishita:
Investigating the mitochondrial genomic landscape of Arabidopsis thaliana by long-read sequencing. PLoS Comput. Biol. 17(1) (2021) - 2020
- [j35]Ryo Nakabayashi, Shinichi Morishita:
HiC-Hiker: a probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C. Bioinform. 36(13): 3966-3974 (2020) - 2019
- [j34]Bansho Masutani, Shinichi Morishita:
A framework and an algorithm to detect low-abundance DNA by a handy sequencer and a palm-sized computer. Bioinform. 35(4): 584-592 (2019) - [j33]Bansho Masutani, Shinichi Morishita:
A framework and an algorithm to detect low-abundance DNA by a handy sequencer and a palm-sized computer. Bioinform. 35(8): 1443 (2019) - 2016
- [j32]Yuta Suzuki, Jonas Korlach, Stephen W. Turner, Tatsuya Tsukahara, Junko Taniguchi, Wei Qu, Kazuki Ichikawa, Jun Yoshimura, Hideaki Yurino, Yuji Takahashi, Jun Mitsui, Hiroyuki Ishiura, Shoji Tsuji, Hiroyuki Takeda, Shinichi Morishita:
AgIn: measuring the landscape of CpG methylation of individual repetitive elements. Bioinform. 32(19): 2911-2919 (2016) - 2015
- [j31]Kazuki Ichikawa, Shinichi Morishita:
A linear time algorithm for detecting long genomic regions enriched with a specific combination of epigenetic states. BMC Genom. 16(S-2): S8 (2015) - 2014
- [j30]Koichiro Doi, Taku Monjo, Pham H. Hoang, Jun Yoshimura, Hideaki Yurino, Jun Mitsui, Hiroyuki Ishiura, Yuji Takahashi, Yaeko Ichikawa, Jun Goto, Shoji Tsuji, Shinichi Morishita:
Rapid detection of expanded short tandem repeats in personal genomics using hybrid sequencing. Bioinform. 30(6): 815-822 (2014) - [j29]Kazuki Ichikawa, Shinichi Morishita:
A Simple but Powerful Heuristic Methodfor Accelerating $k$ -Means Clusteringof Large-Scale Data in Life Science. IEEE ACM Trans. Comput. Biol. Bioinform. 11(4): 681-692 (2014) - 2011
- [j28]Hongyan Wu, Taro L. Saito, Shinichi Morishita:
Accelerating Path-free XML Queries in RDBMS. Inf. Media Technol. 6(1): 52-63 (2011) - 2009
- [j27]Taro L. Saito, Jun Yoshimura, Shin Sasaki, Budrul Ahsan, Atsushi Sasaki, Reginaldo Kuroshu, Shinichi Morishita:
UTGB toolkit for personalized genome browsers. Bioinform. 25(15): 1856-1861 (2009) - [j26]Yuki Naito, Jun Yoshimura, Shinichi Morishita, Kumiko Ui-Tei:
siDirect 2.0: updated software for designing functional siRNA with reduced seed-dependent off-target effect. BMC Bioinform. 10: 392 (2009) - [j25]Budrul Ahsan, Taro L. Saito, Shin-ichi Hashimoto, Keigo Muramatsu, Manabu Tsuda, Atsushi Sasaki, Kouji Matsushima, Toshiro Aigaki, Shinichi Morishita:
MachiBase: a Drosophila melanogaster 5'-end mRNA transcription database. Nucleic Acids Res. 37(Database-Issue): 49-53 (2009) - 2008
- [j24]Budrul Ahsan, Daisuke Kobayashi, Tomoyuki Yamada, Masahiro Kasahara, Shin Sasaki, Taro L. Saito, Yukinobu Nagayasu, Koichiro Doi, Yoichiro Nakatani, Wei Qu, Tomoko Jindo, Atsuko Shimada, Kiyoshi Naruse, Atsushi Toyoda, Yoko Kuroki, Asao Fujiyama, Takashi Sasaki, Atsushi Shimizu, Shuichi Asakawa, Nobuyoshi Shimizu, Shin-ichi Hashimoto, Jun Yang, Yongjun Lee, Kouji Matsushima, Sumio Sugano, Mitsuru Sakaizumi, Takanori Narita, Kazuko Ohishi, Shinobu Haga, Fumiko Ohta, Hisayo Nomoto, Keiko Nogata, Tomomi Morishita, Tomoko Endo, Tadasu Shin-I, Hiroyuki Takeda, Yuji Kohara, Shinichi Morishita:
UTGB/medaka: genomic resource database for medaka biology. Nucleic Acids Res. 36(Database-Issue): 747-752 (2008) - 2006
- [j23]Tomoyuki Yamada, Haruhiko Soma, Shinichi Morishita:
PrimerStation: a highly specific multiplex genomic PCR primer design server for the human genome. Nucleic Acids Res. 34(Web-Server-Issue): 665-669 (2006) - 2005
- [j22]Tomoyuki Yamada, Shinichi Morishita:
Accelerated off-target search algorithm for siRNA. Bioinform. 21(8): 1316-1324 (2005) - [j21]Yasuhiro Kasai, Shin-ichi Hashimoto, Tomoyuki Yamada, Jun Sese, Sumio Sugano, Kouji Matsushima, Shinichi Morishita:
5'SAGE: 5'-end Serial Analysis of Gene Expression database. Nucleic Acids Res. 33(Database-Issue): 550-552 (2005) - [j20]Yuki Naito, Tomoyuki Yamada, Takahiro Matsumiya, Kumiko Ui-Tei, Kaoru Saigo, Shinichi Morishita:
dsCheck: highly sensitive off-target search software for double-stranded RNA-mediated RNA interference. Nucleic Acids Res. 33(Web-Server-Issue): 589-591 (2005) - [j19]Taro L. Saito, Jun Sese, Yoichiro Nakatani, Fumi Sano, Masashi Yukawa, Yoshikazu Ohya, Shinichi Morishita:
Data mining tools for the Saccharomyces cerevisiae morphological database. Nucleic Acids Res. 33(Web-Server-Issue): 753-757 (2005) - 2004
- [j18]Jun Sese, Yukinori Kurokawa, Morito Monden, Kikuya Kato, Shinichi Morishita:
Constrained clusters of gene expression profiles with pathological features. Bioinform. 20(17): 3137-3145 (2004) - [j17]Miwaka Ohtani, Ayaka Saka, Fumi Sano, Yoshikazu Ohya, Shinichi Morishita:
Development of Image Processing Program for Yeast Cell Morphology. J. Bioinform. Comput. Biol. 1(4): 695-710 (2004) - [j16]Tomoyuki Yamada, Shinichi Morishita:
Computing Highly Specific and Noise-tolerant Oligomers Efficiently. J. Bioinform. Comput. Biol. 2(1): 21-46 (2004) - [j15]Taro L. Saito, Miwaka Ohtani, Hiroshi Sawai, Fumi Sano, Ayaka Saka, Daisuke Watanabe, Masashi Yukawa, Yoshikazu Ohya, Shinichi Morishita:
SCMD: Saccharomyces cerevisiae Morphological Database. Nucleic Acids Res. 32(Database-Issue): 319-322 (2004) - [j14]Yuki Naito, Tomoyuki Yamada, Kumiko Ui-Tei, Shinichi Morishita, Kaoru Saigo:
siDirect: highly effective, target-specific siRNA design software for mammalian RNA interference. Nucleic Acids Res. 32(Web-Server-Issue): 124-129 (2004) - [j13]Mohammed Javeed Zaki, Shinichi Morishita, Isidore Rigoutsos:
Report on BIOKDD04: workshop on data mining in Bioinformatics. SIGKDD Explor. 6(2): 153-154 (2004) - 2003
- [j12]Jun Ogasawara, Shinichi Morishita:
A Fast and Sensitive Algorithm for Aligning Ests to the Human Genome. J. Bioinform. Comput. Biol. 1(2): 363-386 (2003) - [j11]Setsuo Arikawa, Koichi Furukawa, Shinichi Morishita, Hiroshi Motoda:
Preface. Theor. Comput. Sci. 292(2): 343-344 (2003) - 2002
- [j10]Toshihiko Honkura, Jun Ogasawara, Tomoyuki Yamada, Shinichi Morishita:
The Gene Resource Locator: gene locus maps for transcriptome analysis. Nucleic Acids Res. 30(1): 221-225 (2002) - [j9]Jie Cheng, Christos Hatzis, Hisashi Hayashi, Mark-A. Krogel, Shinichi Morishita, David Page, Jun Sese:
KDD Cup 2001 Report. SIGKDD Explor. 3(2): 47-64 (2002) - 2001
- [j8]Yasuhiko Morimoto, Hiromu Ishii, Shinichi Morishita:
Efficient Construction of Regression Trees with Range and Region Splitting. Mach. Learn. 45(3): 235-259 (2001) - [j7]Jun Sese, Hitoshi Nikaidou, Shoko Kawamoto, Yuichi Minesaki, Shinichi Morishita, Kousaku Okubo:
BodyMap incorporated PCR-based expression profiling data and a gene ranking system. Nucleic Acids Res. 29(1): 156-158 (2001) - [j6]Takeshi Fukuda, Yasuhiko Morimoto, Shinichi Morishita, Takeshi Tokuyama:
Data Mining with optimized two-dimensional association rules. ACM Trans. Database Syst. 26(2): 179-213 (2001) - 2000
- [j5]Teruyoshi Hishiki, Shoko Kawamoto, Shinichi Morishita, Kousaku Okubo:
BodyMap: a human and mouse gene expression database. Nucleic Acids Res. 28(1): 136-138 (2000) - 1999
- [j4]Takeshi Fukuda, Yasuhiko Morimoto, Shinichi Morishita, Takeshi Tokuyama:
Mining Optimized Association Rules for Numeric Attributes. J. Comput. Syst. Sci. 58(1): 1-12 (1999) - 1997
- [j3]Shinichi Morishita:
Avoiding Cartesian products for multiple joins. J. ACM 44(1): 57-85 (1997) - 1996
- [j2]Shinichi Morishita:
An Extension of Van Gelder's Alternating Fixpoint to Magic Programs. J. Comput. Syst. Sci. 52(3): 506-521 (1996) - 1994
- [j1]Marcia A. Derr, Shinichi Morishita, Geoffrey Phipps:
The Glue-Nail Deductive Database System: Design, Implementation, and Evaluation. VLDB J. 3(2): 123-160 (1994)
Conference and Workshop Papers
- 2016
- [c32]Yadong Wang, Kevin Burrage, Yunlong Liu, Shinichi Morishita, Tianhai Tian, Qinghua Jiang, Jiangning Song, Guohua Wang, Qian Zhu, Xiaohua Tony Hu:
Preface. BIBM 2016: 1-2 - 2011
- [c31]Shinichi Morishita:
Invited: Searching massive epigenome data for evolutionarily conserved sequence motifs. ICCABS 2011: 7 - [c30]Atsushi Sasaki, Shinichi Morishita:
Poster: Robust estimation of DNA methylation with local regression. ICCABS 2011: 259 - 2008
- [c29]Taro L. Saito, Shinichi Morishita:
Relational-style XML query. SIGMOD Conference 2008: 303-314 - 2007
- [c28]Taro L. Saito, Shinichi Morishita:
Efficient Integration of Structure Indexes of XML. DASFAA 2007: 781-792 - 2006
- [c27]Taro L. Saito, Shinichi Morishita:
Amoeba Join: Overcoming Structural Fluctuations in XML Data. WebDB 2006 - 2004
- [c26]Jun Sese, Shinichi Morishita:
Itemset Classified Clustering. PKDD 2004: 398-409 - 2003
- [c25]Tomoyuki Yamada, Shinichi Morishita:
Computing Highly Specific and Mismatch Tolerant Oligomers Efficiently. CSB 2003: 316-325 - 2002
- [c24]Jun Ogasawara, Shinichi Morishita:
Practical Software for Aligning ESTs to Human Genome. CPM 2002: 1-16 - [c23]Jun Ogasawara, Shinichi Morishita:
Fast and Sensitive Algorithm for Aligning ESTs to Human Genome. CSB 2002: 43-53 - [c22]Shinichi Morishita:
Computing Optimal Hypotheses Efficiently for Boosting. Progress in Discovery Science 2002: 471-481 - [c21]Jun Sese, Shinichi Morishita:
Answering the Most Correlated N Association Rules Efficiently. PKDD 2002: 410-422 - 2000
- [c20]Shinichi Morishita, Jun Sese:
Traversing Itemset Lattice with Statistical Metric Pruning. PODS 2000: 226-236 - 1999
- [c19]Akihiro Nakaya, Hideharu Furukawa, Shinichi Morishita:
Weighted Majority Decision among Several Region Rules for Scientific Discovery. Discovery Science 1999: 17-29 - [c18]Akihiro Nakaya, Shinichi Morishita:
Weighted Majority Decision among Region Rules for a Categorical Dataset. Discovery Science 1999: 345-346 - [c17]Shinichi Morishita, Teruyoshi Hishiki, Kousaku Okubo:
Towards Mining Gene Expression Database. 1999 ACM SIGMOD Workshop on Research Issues in Data Mining and Knowledge Discovery 1999 - [c16]Shinichi Morishita, Akihiro Nakaya:
Parallel Branch-and-Bound Graph Search for Correlated Association Rules. Large-Scale Parallel Data Mining 1999: 127-144 - 1998
- [c15]Shinichi Morishita:
On Classification and Regression. Discovery Science 1998: 40-57 - 1997
- [c14]Kunikazu Yoda, Takeshi Fukuda, Yasuhiko Morimoto, Shinichi Morishita, Takeshi Tokuyama:
Computing Optimized Rectilinear Regions for Association Rules. KDD 1997: 96-103 - [c13]Yasuhiko Morimoto, Hiromu Ishii, Shinichi Morishita:
Efficient Construction of Regression Trees with Range and Region Splitting. VLDB 1997: 166-175 - 1996
- [c12]Takeshi Fukuda, Yasuhiko Morimoto, Shinichi Morishita, Takeshi Tokuyama:
Interval Finding and Its Application to Data Mining. ISAAC 1996: 55-64 - [c11]Takeshi Fukuda, Yasuhiko Morimoto, Shinichi Morishita, Takeshi Tokuyama:
Mining Optimized Association Rules for Numeric Attributes. PODS 1996: 182-191 - [c10]Takeshi Fukuda, Yasuhiko Morimoto, Shinichi Morishita, Takeshi Tokuyama:
Data Mining Using Two-Dimensional Optimized Accociation Rules: Scheme, Algorithms, and Visualization. SIGMOD Conference 1996: 13-23 - [c9]Takeshi Fukuda, Yasuhiko Morimoto, Shinichi Morishita, Takeshi Tokuyama:
SONAR: System for Optimized Numeric AssociationRules. SIGMOD Conference 1996: 553 - [c8]Takeshi Fukuda, Yasuhiko Morimoto, Shinichi Morishita, Takeshi Tokuyama:
Constructing Efficient Decision Trees by Using Optimized Numeric Association Rules. VLDB 1996: 146-155 - 1993
- [c7]Shinichi Morishita:
An Alternating Fixpoint Tailored to Magic Programs. PODS 1993: 123-134 - [c6]Marcia A. Derr, Shinichi Morishita, Geoffrey Phipps:
Design and Implementation of the Glue-Nail Database System. SIGMOD Conference 1993: 147-156 - 1992
- [c5]Shinichi Morishita:
An anternating fixpoint tailored to magic programs. Workshop on Deductive Databases, JICSLP 1992: 86-95 - [c4]Shinichi Morishita:
Avoiding Cartesian Products in Programs for Multiple Joins. PODS 1992: 368-379 - 1988
- [c3]Kouichi Fukunaga, Shinichi Morishita:
Lattice Programming Methodology. LP 1988: 96-107 - 1987
- [c2]Shinichi Morishita, Masayuki Numao, Shin'ichi Hirose:
Symbolical Construction of Truth Value Domain for Logic Program. ICLP 1987: 533-555 - 1986
- [c1]Shinichi Morishita, Masayuki Numao:
Prolog Computation Model BPM and its Debugger PROEDIT2. LP 1986: 147-158
Editorship
- 2016
- [e4]Tianhai Tian, Qinghua Jiang, Yunlong Liu, Kevin Burrage, Jiangning Song, Yadong Wang, Xiaohua Hu, Shinichi Morishita, Qian Zhu, Guohua Wang:
IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2016, Shenzhen, China, December 15-18, 2016. IEEE Computer Society 2016, ISBN 978-1-5090-1611-2 [contents] - 2011
- [e3]Fang-Xiang Wu, Mohammed Javeed Zaki, Shinichi Morishita, Yi Pan, Stephen Wong, Anastasia Christianson, Xiaohua Hu:
IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2011, Atlanta, GA, USA, November 12-15, , 2011. IEEE Computer Society 2011, ISBN 978-1-4577-1799-4 [contents] - 2004
- [e2]Mohammed Javeed Zaki, Shinichi Morishita, Isidore Rigoutsos:
Proceedings of the 4th ACM SIGKDD Workshop on Data Mining in Bioinformatics (BIOKDD 2004), August 22th, 2004, Seattle, Washington, USA. 2004 [contents] - 2000
- [e1]Setsuo Arikawa, Shinichi Morishita:
Discovery Science, Third International Conference, DS 2000, Kyoto, Japan, December 4-6, 2000, Proceedings. Lecture Notes in Computer Science 1967, Springer 2000, ISBN 3-540-41352-9 [contents]
Informal and Other Publications
- 2004
- [i1]Raghu Ramakrishnan, Rakesh Agrawal, Johann-Christoph Freytag, Toni Bollinger, Christopher W. Clifton, Saso Dzeroski, Jochen Hipp, Daniel A. Keim, Stefan Kramer, Hans-Peter Kriegel, Ulf Leser, Bing Liu, Heikki Mannila, Rosa Meo, Shinichi Morishita, Raymond T. Ng, Jian Pei, Prabhakar Raghavan, Myra Spiliopoulou, Jaideep Srivastava, Vicenç Torra:
Data Mining: The Next Generation. Perspectives Workshop: Data Mining: The Next Generation 2004
Coauthor Index
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