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ORCIDUlf Leser
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- affiliation: Humboldt University of Berlin, Germany
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2020 – today
- 2023
[j81]Arik Ermshaus
, Patrick Schäfer, Ulf Leser:
ClaSP: parameter-free time series segmentation. Data Min. Knowl. Discov. 37(3): 1262-1300 (2023)- [c112]Fabian Lehmann, Jonathan Bader, Friedrich Tschirpke, Lauritz Thamsen, Ulf Leser:
How Workflow Engines Should Talk to Resource Managers: A Proposal for a Common Workflow Scheduling Interface. CCGrid 2023: 166-179 - [c111]Anh Duc Vu, Jan Arne Sparka, Ninon De Mecquenem, Timo Kehrer, Ulf Leser, Lars Grunske:
Design by Contract Revisited in the Context of Scientific Data Analysis Workflows. e-Science 2023: 1-2 - [c110]Anh Duc Vu, Jan Arne Sparka, Ninon De Mecquenem, Timo Kehrer, Ulf Leser, Lars Grunske:
Contract-Driven Design of Scientific Data Analysis Workflows. e-Science 2023: 1-10 - [c109]Arik Ermshaus, Sunita Singh, Ulf Leser:
Time Series Segmentation Applied to a New Data Set for Mobile Sensing of Human Activities. EDBT/ICDT Workshops 2023 - [i27]Patrick Schäfer, Ulf Leser:
WEASEL 2.0 - A Random Dilated Dictionary Transform for Fast, Accurate and Memory Constrained Time Series Classification. CoRR abs/2301.10194 (2023) - [i26]Fabian Lehmann, Jonathan Bader, Friedrich Tschirpke, Lauritz Thamsen, Ulf Leser:
How Workflow Engines Should Talk to Resource Managers: A Proposal for a Common Workflow Scheduling Interface. CoRR abs/2302.07652 (2023) - [i25]Florian Schintke, Ninon De Mecquenem, David Frantz, Vanessa Emanuela Guarino, Marcus Hilbrich, Fabian Lehmann, Rebecca Sattler, Jan Arne Sparka, Daniel Speckhard, Hermann Stolte, Anh Duc Vu, Ulf Leser:
Validity Constraints for Data Analysis Workflows. CoRR abs/2305.08409 (2023) - [i24]Samuele Garda, Leon Weber-Genzel, Robert Martin, Ulf Leser:
BELB: a Biomedical Entity Linking Benchmark. CoRR abs/2308.11537 (2023) - [i23]Jonathan Bader, Fabian Lehmann, Lauritz Thamsen, Ulf Leser, Odej Kao:
Lotaru: Locally Predicting Workflow Task Runtimes for Resource Management on Heterogeneous Infrastructures. CoRR abs/2309.06918 (2023) - 2022
- [j80]Samuele Garda, Freyda Lenihan-Geels, Sebastian Proft, Stefanie Hochmuth, Markus Schuelke, Dominik Seelow, Ulf Leser:
RegEl corpus: identifying DNA regulatory elements in the scientific literature. Database J. Biol. Databases Curation 2022(2022) (2022) - [j79]Leon Weber, Mario Sänger, Samuele Garda, Fabio Barth, Christoph Alt, Ulf Leser:
Chemical-protein relation extraction with ensembles of carefully tuned pretrained language models. Database J. Biol. Databases Curation 2022(2022) (2022) - [j78]Patrick Schäfer, Ulf Leser:
Motiflets - Simple and Accurate Detection of Motifs in Time Series. Proc. VLDB Endow. 16(4): 725-737 (2022) - [c108]Arik Ermshaus, Patrick Schäfer, Ulf Leser:
Window Size Selection in Unsupervised Time Series Analytics: A Review and Benchmark. AALTD@ECML/PKDD 2022: 83-101 - [c107]Xing David Wang, Ulf Leser, Leon Weber:
BEEDS: Large-Scale Biomedical Event Extraction using Distant Supervision and Question Answering. BioNLP@ACL 2022: 298-309 - [c106]Jonathan Bader, Fabian Lehmann, Alexander Groth, Lauritz Thamsen, Dominik Scheinert, Jonathan Will, Ulf Leser, Odej Kao:
Reshi: Recommending Resources for Scientific Workflow Tasks on Heterogeneous Infrastructures. IPCCC 2022: 269-274 - [c105]Jonathan Bader, Fabian Lehmann, Lauritz Thamsen, Jonathan Will, Ulf Leser, Odej Kao:
Lotaru: Locally Estimating Runtimes of Scientific Workflow Tasks in Heterogeneous Clusters. SSDBM 2022: 1:1-1:12 - [i22]Jonathan Bader, Fabian Lehmann, Lauritz Thamsen, Jonathan Will, Ulf Leser, Odej Kao:
Lotaru: Locally Estimating Runtimes of Scientific Workflow Tasks in Heterogeneous Clusters. CoRR abs/2205.11181 (2022) - [i21]Patrick Schäfer, Ulf Leser:
Motiflets - Fast and Accurate Detection of Motifs in Time Series. CoRR abs/2206.03735 (2022) - [i20]Arik Ermshaus, Patrick Schäfer, Ulf Leser:
ClaSP - Parameter-free Time Series Segmentation. CoRR abs/2207.13987 (2022) - [i19]Jonathan Bader, Fabian Lehmann, Alexander Groth, Lauritz Thamsen, Dominik Scheinert, Jonathan Will, Ulf Leser, Odej Kao:
Reshi: Recommending Resources for Scientific Workflow Tasks on Heterogeneous Infrastructures. CoRR abs/2208.07905 (2022) - 2021
- [j77]Mario Sänger, Ulf Leser:
Large-scale entity representation learning for biomedical relationship extraction. Bioinform. 37(2): 236-242 (2021) - [j76]Leon Weber, Mario Sänger, Jannes Münchmeyer, Maryam Habibi, Ulf Leser, Alan Akbik:
HunFlair: an easy-to-use tool for state-of-the-art biomedical named entity recognition. Bioinform. 37(17): 2792-2794 (2021) - [j75]Ulf Leser, Marcus Hilbrich, Claudia Draxl, Peter Eisert, Lars Grunske, Patrick Hostert, Dagmar Kainmüller, Odej Kao, Birte Kehr, Timo Kehrer, Christoph Koch, Volker Markl, Henning Meyerhenke, Tilmann Rabl, Alexander Reinefeld, Knut Reinert, Kerstin Ritter, Björn Scheuermann, Florian Schintke, Nicole Schweikardt, Matthias Weidlich:
The Collaborative Research Center FONDA. Datenbank-Spektrum 21(3): 255-260 (2021) - [c104]Matthias Vogt, Ulf Leser, Alan Akbik:
Early Detection of Sexual Predators in Chats. ACL/IJCNLP (1) 2021: 4985-4999 - [c103]Mario Sänger, Leon Weber, Ulf Leser:
WBI at MEDIQA 2021: Summarizing Consumer Health Questions with Generative Transformers. BioNLP@NAACL-HLT 2021: 86-95 - [c102]Patrick Schäfer, Arik Ermshaus, Ulf Leser:
ClaSP - Time Series Segmentation. CIKM 2021: 1578-1587 - [c101]Fabian Lehmann, David Frantz, Sören Becker, Ulf Leser, Patrick Hostert:
FORCE on Nextflow: Scalable Analysis of Earth Observation Data on Commodity Clusters. CIKM Workshops 2021 - [c100]Leon Weber, Jannes Münchmeyer, Samuele Garda, Ulf Leser:
Extend, don't rebuild: Phrasing conditional graph modification as autoregressive sequence labelling. EMNLP (1) 2021: 1213-1224 - [c99]Rafael Ferreira da Silva, Henri Casanova, Kyle Chard, Ilkay Altintas, Rosa M. Badia, Bartosz Balis, Tainã Coleman, Frederik Coppens, Frank Di Natale, Bjoern Enders, Thomas Fahringer, Rosa Filgueira, Grigori Fursin, Daniel Garijo, Carole A. Goble, Dorran Howell, Shantenu Jha, Daniel S. Katz, Daniel E. Laney, Ulf Leser, Maciej Malawski, Kshitij Mehta, Loïc Pottier, Jonathan Ozik, J. Luc Peterson, Lavanya Ramakrishnan, Stian Soiland-Reyes, Douglas Thain, Matthew Wolf:
A Community Roadmap for Scientific Workflows Research and Development. WORKS 2021: 81-90 - [i18]Rafael Ferreira da Silva, Henri Casanova, Kyle Chard, Tainã Coleman, Dan Laney, Dong H. Ahn, Shantenu Jha, Dorran Howell, Stian Soiland-Reyes, Ilkay Altintas, Douglas Thain, Rosa Filgueira, Yadu N. Babuji, Rosa M. Badia, Bartosz Balis, Silvina Caíno-Lores, Scott Callaghan, Frederik Coppens, Michael R. Crusoe, Kaushik De, Frank Di Natale, Tu Mai Anh Do, Bjoern Enders, Thomas Fahringer, Anne Fouilloux, Grigori Fursin, Alban Gaignard, Alex Ganose, Daniel Garijo, Sandra Gesing, Carole A. Goble, Adil Hasan, Sebastiaan Huber, Daniel S. Katz, Ulf Leser, Douglas Lowe, Bertram Ludäscher, Ketan Maheshwari, Maciej Malawski, Rajiv Mayani, Kshitij Mehta, André Merzky, Todd S. Munson, Jonathan Ozik, Loïc Pottier, Sashko Ristov, Mehdi Roozmeh, Renan Souza, Frédéric Suter, Benjamín Tovar, Matteo Turilli, Karan Vahi, Alvaro Vidal-Torreira, Wendy R. Whitcup, Michael Wilde, Alan R. Williams, Matthew Wolf, Justin M. Wozniak:
Workflows Community Summit: Advancing the State-of-the-art of Scientific Workflows Management Systems Research and Development. CoRR abs/2106.05177 (2021) - [i17]Rafael Ferreira da Silva, Henri Casanova, Kyle Chard, Ilkay Altintas, Rosa M. Badia, Bartosz Balis, Tainã Coleman, Frederik Coppens, Frank Di Natale, Bjoern Enders, Thomas Fahringer, Rosa Filgueira, Grigori Fursin, Daniel Garijo, Carole A. Goble, Dorran Howell, Shantenu Jha, Daniel S. Katz, Daniel E. Laney, Ulf Leser, Maciej Malawski, Kshitij Mehta, Loïc Pottier, Jonathan Ozik, J. Luc Peterson, Lavanya Ramakrishnan, Stian Soiland-Reyes, Douglas Thain, Matthew Wolf:
A Community Roadmap for Scientific Workflows Research and Development. CoRR abs/2110.02168 (2021) - 2020
- [j74]Maryam Habibi, Astrid Rheinländer, Wolfgang Thielemann, Robert Adams, Peter Fischer, Sylvia Krolkiewicz, David Luis Wiegandt, Ulf Leser:
PatSeg: A Sequential Patent Segmentation Approach. Big Data Res. 19-20: 100133 (2020) - [j73]Leon Weber, Jannes Münchmeyer, Tim Rocktäschel, Maryam Habibi, Ulf Leser:
HUNER: improving biomedical NER with pretraining. Bioinform. 36(1): 295-302 (2020) - [j72]Leon Weber, Kirsten Thobe, Oscar Arturo Migueles Lozano, Jana Wolf, Ulf Leser:
PEDL: extracting protein-protein associations using deep language models and distant supervision. Bioinform. 36(Supplement-1): i490-i498 (2020) - [j71]Patrick Schäfer, Ulf Leser:
TEASER: early and accurate time series classification. Data Min. Knowl. Discov. 34(5): 1336-1362 (2020) - [j70]Maryam Habibi, Johannes Starlinger, Ulf Leser:
DeepTable: a permutation invariant neural network for table orientation classification. Data Min. Knowl. Discov. 34(6): 1963-1983 (2020) - [j69]Theodoros Chondrogiannis, Panagiotis Bouros, Johann Gamper, Ulf Leser, David B. Blumenthal:
Finding k-shortest paths with limited overlap. VLDB J. 29(5): 1023-1047 (2020) - [c98]Xing David Wang, Leon Weber, Ulf Leser:
Biomedical Event Extraction as Multi-turn Question Answering. LOUHI@EMNLP 2020: 88-96 - [c97]Maryam Habibi, Johannes Starlinger, Ulf Leser:
TabSim: A Siamese Neural Network for Accurate Estimation of Table Similarity. IEEE BigData 2020: 930-937 - [i16]Christopher Schiefer, Marc Bux, Jörgen Brandt, Clemens Messerschmidt, Knut Reinert, Dieter Beule, Ulf Leser:
Portability of Scientific Workflows in NGS Data Analysis: A Case Study. CoRR abs/2006.03104 (2020) - [i15]Leon Weber, Mario Sänger, Jannes Münchmeyer, Maryam Habibi, Ulf Leser, Alan Akbik:
HunFlair: An Easy-to-Use Tool for State-of-the-Art Biomedical Named Entity Recognition. CoRR abs/2008.07347 (2020) - [i14]Maryam Habibi, Johannes Starlinger, Ulf Leser:
TabSim: A Siamese Neural Network for Accurate Estimation of Table Similarity. CoRR abs/2008.10856 (2020)
2010 – 2019
- 2019
- [j68]Jurica Seva, David Luis Wiegandt, Julian Goetze, Mario Lamping, Damian Rieke, Reinhold Schaefer, Patrick Jähnichen, Madeleine Kittner, Steffen Pallarz, Johannes Starlinger, Ulrich Keilholz, Ulf Leser:
VIST - a Variant-Information Search Tool for precision oncology. BMC Bioinform. 20(1): 429:1-429:11 (2019) - [j67]Carl Witt, Marc Bux, Wladislaw Gusew, Ulf Leser:
Predictive performance modeling for distributed batch processing using black box monitoring and machine learning. Inf. Syst. 82: 33-52 (2019) - [c96]Leon Weber, Pasquale Minervini, Jannes Münchmeyer, Ulf Leser, Tim Rocktäschel:
NLProlog: Reasoning with Weak Unification for Question Answering in Natural Language. ACL (1) 2019: 6151-6161 - [c95]Jurica Seva, Julian Goetze, Mario Lamping, Damian Tobias Rieke, Reinhold Schaefer, Ulf Leser:
Information Retrieval for Precision Oncology. BTW 2019: 533-536 - [c94]Mario Sänger, Leon Weber, Madeleine Kittner, Ulf Leser:
Classifying German Animal Experiment Summaries with Multi-lingual BERT at CLEF eHealth 2019 Task 1. CLEF (Working Notes) 2019 - [c93]Stefan Sprenger, Patrick Schäfer, Ulf Leser:
BB-Tree: A practical and efficient main-memory index structure for multidimensional workloads. EDBT 2019: 169-180 - [c92]Stefan Sprenger, Patrick Schäfer, Ulf Leser:
BB-Tree: A Main-Memory Index Structure for Multidimensional Range Queries. ICDE 2019: 1566-1569 - [c91]Carl Witt, Jakob van Santen, Ulf Leser:
Learning Low-Wastage Memory Allocations for Scientific Workflows at IceCube. HPCS 2019: 233-240 - [c90]Carl Witt, Dennis Wagner, Ulf Leser:
Feedback-Based Resource Allocation for Batch Scheduling of Scientific Workflows. HPCS 2019: 761-768 - [i13]Leon Weber, Pasquale Minervini, Jannes Münchmeyer, Ulf Leser, Tim Rocktäschel:
NLProlog: Reasoning with Weak Unification for Question Answering in Natural Language. CoRR abs/1906.06187 (2019) - [i12]Patrick Schäfer, Ulf Leser:
TEASER: Early and Accurate Time Series Classification. CoRR abs/1908.03405 (2019) - 2018
- [j66]Sebastian Wandelt, Xiaoqian Sun, Ulf Leser:
Column-wise compression of open relational data. Inf. Sci. 457-458: 48-61 (2018) - [j65]Johannes Starlinger, Steffen Pallarz, Jurica Seva, Damian Rieke, Christine Sers, Ulrich Keilholz, Ulf Leser:
Variant information systems for precision oncology. BMC Medical Informatics Decis. Mak. 18(1): 107:1-107:19 (2018) - [j64]Fabian Fier, Nikolaus Augsten, Panagiotis Bouros, Ulf Leser, Johann-Christoph Freytag:
Set Similarity Joins on MapReduce: An Experimental Survey. Proc. VLDB Endow. 11(10): 1110-1122 (2018) - [c89]Jurica Seva, Martin Wackerbauer, Ulf Leser:
Identifying Key Sentences for Precision Oncology Using Semi-Supervised Learning. BioNLP 2018: 35-46 - [c88]Jurica Seva, Mario Sänger, Ulf Leser:
WBI at CLEF eHealth 2018 Task 1: Language-independent ICD-10 Coding using Multi-lingual Embeddings and Recurrent Neural Networks. CLEF (Working Notes) 2018 - [c87]Carl Witt, Dennis Wagner, Ulf Leser:
POS: Online Learning for Memory-Aware Scheduling of Scientific Workflows. eScience 2018: 399-400 - [c86]Patrick Schäfer, Dirk Pflugmacher, Patrick Hostert, Ulf Leser:
Classifying Land Cover from Satellite Images Using Time Series Analytics. EDBT/ICDT Workshops 2018: 10-15 - [c85]Theodoros Chondrogiannis, Panagiotis Bouros, Johann Gamper, Ulf Leser, David B. Blumenthal:
Finding k-dissimilar paths with minimum collective length. SIGSPATIAL/GIS 2018: 404-407 - [c84]Stefan Sprenger, Steffen Zeuch, Ulf Leser:
Exploiting Automatic Vectorization to Employ SPMD on SIMD Registers. ICDE Workshops 2018: 90-95 - [c83]Michael Loster, Manuel Hegner, Felix Naumann, Ulf Leser:
Dissecting Company Names using Sequence Labeling. LWDA 2018: 227-238 - [c82]Stefan Sprenger, Patrick Schäfer, Ulf Leser:
Multidimensional range queries on modern hardware. SSDBM 2018: 4:1-4:12 - [r4]Ulf Leser:
Semantic Data Integration for Life Science Entities. Encyclopedia of Database Systems (2nd ed.) 2018 - [r3]Ulf Leser, Silke Trißl:
Graph Management in the Life Sciences. Encyclopedia of Database Systems (2nd ed.) 2018 - [i11]Stefan Sprenger, Patrick Schäfer, Ulf Leser:
Multidimensional Range Queries on Modern Hardware. CoRR abs/1801.03644 (2018) - [i10]Roland Roller, Madeleine Kittner, Dirk Weissenborn, Ulf Leser:
Cross-lingual Candidate Search for Biomedical Concept Normalization. CoRR abs/1805.01646 (2018) - [i9]Carl Witt, Marc Bux, Wladislaw Gusew, Ulf Leser:
Predictive Performance Modeling for Distributed Computing using Black-Box Monitoring and Machine Learning. CoRR abs/1805.11877 (2018) - [i8]Theodoros Chondrogiannis, Panagiotis Bouros, Johann Gamper, Ulf Leser, David B. Blumenthal:
Finding k-Dissimilar Paths with Minimum Collective Length. CoRR abs/1809.06831 (2018) - 2017
- [j63]Yvonne Lichtblau, Karin Zimmermann, Berit Haldemann, Dido Lenze, Michael Hummel, Ulf Leser:
Comparative assessment of differential network analysis methods. Briefings Bioinform. 18(5): 837-850 (2017) - [j62]Maryam Habibi, Leon Weber, Mariana L. Neves, David Luis Wiegandt, Ulf Leser:
Deep learning with word embeddings improves biomedical named entity recognition. Bioinform. 33(14): i37-i48 (2017) - [j61]Saskia Trescher, Jannes Münchmeyer, Ulf Leser:
Estimating genome-wide regulatory activity from multi-omics data sets using mathematical optimization. BMC Syst. Biol. 11(1): 41:1-41:18 (2017) - [j60]Astrid Rheinländer, Ulf Leser, Goetz Graefe:
Optimization of Complex Dataflows with User-Defined Functions. ACM Comput. Surv. 50(3): 38:1-38:39 (2017) - [j59]Johannes Starlinger, Madeleine Kittner, Oliver Blankenstein, Ulf Leser:
How to improve information extraction from German medical records. it Inf. Technol. 59(4): 171 (2017) - [j58]Jörgen Brandt, Wolfgang Reisig, Ulf Leser:
Computation semantics of the functional scientific workflow language Cuneiform. J. Funct. Program. 27: e22 (2017) - [c81]Patrick Schäfer, Ulf Leser:
Benchmarking Univariate Time Series Classifiers. BTW 2017: 289-298 - [c80]Patrick Schäfer, Ulf Leser:
Fast and Accurate Time Series Classification with WEASEL. CIKM 2017: 637-646 - [c79]Jurica Seva, Madeleine Kittner, Roland Roller, Ulf Leser:
Multi-lingual ICD-10 Coding using a Hybrid rule-based and Supervised Classification Approach at CLEF eHealth 2017. CLEF (Working Notes) 2017 - [c78]Georgia Kougka, Anastasios Gounaris, Ulf Leser:
Modeling Data Flow Execution in a Parallel Environment. DaWaK 2017: 183-196 - [c77]Theodoros Chondrogiannis, Panagiotis Bouros, Johann Gamper, Ulf Leser:
Exact and Approximate Algorithms for Finding k-Shortest Paths with Limited Overlap. EDBT 2017: 414-425 - [c76]Marc Bux, Jörgen Brandt, Carl Witt, Jim Dowling, Ulf Leser:
Hi-WAY: Execution of Scientific Workflows on Hadoop YARN. EDBT 2017: 668-679 - [c75]Mario Sänger, Ulf Leser, Roman Klinger:
Fine-Grained Opinion Mining from Mobile App Reviews with Word Embedding Features. NLDB 2017: 3-14 - [i7]Patrick Schäfer, Ulf Leser:
Fast and Accurate Time Series Classification with WEASEL. CoRR abs/1701.07681 (2017) - [i6]Patrick Schäfer, Ulf Leser:
Multivariate Time Series Classification with WEASEL+MUSE. CoRR abs/1711.11343 (2017) - 2016
- [j57]Liam Harold Childs, Soulafa Mamlouk, Jörgen Brandt, Christine Sers, Ulf Leser:
SoFIA: a data integration framework for annotating high-throughput datasets. Bioinform. 32(17): 2590-2597 (2016) - [j56]Philippe Thomas, Tim Rocktäschel, Jörg Hakenberg, Yvonne Lichtblau, Ulf Leser:
SETH detects and normalizes genetic variants in text. Bioinform. 32(18): 2883-2885 (2016) - [j55]Johannes Starlinger, Sarah Cohen Boulakia, Sanjeev Khanna, Susan B. Davidson, Ulf Leser:
Effective and efficient similarity search in scientific workflow repositories. Future Gener. Comput. Syst. 56: 584-594 (2016) - [j54]Maryam Habibi, David Luis Wiegandt, Florian Schmedding, Ulf Leser:
Recognizing chemicals in patents: a comparative analysis. J. Cheminformatics 8(1): 59:1-59:15 (2016) - [j53]Thomas Krause, Ulf Leser, Anke Lüdeling:
graphANNIS: A Fast Query Engine for Deeply Annotated Linguistic Corpora. J. Lang. Technol. Comput. Linguistics 31(1): 1-25 (2016) - [j52]Daniel Taliun, Johann Gamper, Ulf Leser, Cristian Pattaro:
Fast Sampling-Based Whole-Genome Haplotype Block Recognition. IEEE ACM Trans. Comput. Biol. Bioinform. 13(2): 315-325 (2016) - [c74]Mario Sänger, Ulf Leser, Steffen Kemmerer, Peter Adolphs, Roman Klinger:
SCARE ― The Sentiment Corpus of App Reviews with Fine-grained Annotations in German. LREC 2016 - [c73]David Luis Wiegandt, Johannes Starlinger, Ulf Leser:
Graph n-grams for Scientific Workflow Similarity Search. LWDA 2016: 213-224 - [c72]Astrid Rheinländer, Mario Lehmann, Anja Kunkel, Jörg Meier, Ulf Leser:
Potential and Pitfalls of Domain-Specific Information Extraction at Web Scale. SIGMOD Conference 2016: 759-771 - [c71]Maryam Habibi, David Luis Wiegandt, Florian Schmedding, Ulf Leser:
Performance of Gene Name Recognition Tools on Patents. SMBM 2016: 3-10 - [c70]Anja Kunkel, Astrid Rheinländer, Christopher Schiefer, Sven Helmer, Panagiotis Bouros, Ulf Leser:
PIEJoin: Towards Parallel Set Containment Joins. SSDBM 2016: 11:1-11:12 - [c69]Stefan Sprenger, Steffen Zeuch, Ulf Leser:
Cache-Sensitive Skip List: Efficient Range Queries on Modern CPUs. ADMS/IMDM@VLDB 2016: 1-17 - 2015
- [j51]Philippe Thomas, Pawel Durek, Illés Solt, Bertram Klinger, Franziska Witzel, Pascal Schulthess, Yvonne Mayer, Domonkos Tikk, Nils Blüthgen, Ulf Leser:
Computer-assisted curation of a human regulatory core network from the biological literature. Bioinform. 31(8): 1258-1266 (2015) - [j50]Marc Bux, Ulf Leser:
DynamicCloudSim: Simulating heterogeneity in computational clouds. Future Gener. Comput. Syst. 46: 85-99 (2015) - [j49]Astrid Rheinländer, Arvid Heise, Fabian Hueske, Ulf Leser, Felix Naumann:
SOFA: An extensible logical optimizer for UDF-heavy data flows. Inf. Syst. 52: 96-125 (2015) - [j48]Sebastian Wandelt, Ulf Leser:
MRCSI: Compressing and Searching String Collections with Multiple References. Proc. VLDB Endow. 8(5): 461-472 (2015) - [j47]Marc Bux, Jörgen Brandt, Carsten Lipka, Kamal Hakimzadeh, Jim Dowling, Ulf Leser:
SAASFEE: Scalable Scientific Workflow Execution Engine. Proc. VLDB Endow. 8(12): 1892-1895 (2015) - [c68]Jörgen Brandt, Marc Bux, Ulf Leser:
Cuneiform: a Functional Language for Large Scale Scientific Data Analysis. EDBT/ICDT Workshops 2015: 7-16 - [c67]Tobias Rawald, Mike Sips, Norbert Marwan, Ulf Leser:
Massively Parallel Analysis of Similarity Matrices on Heterogeneous Hardware. EDBT/ICDT Workshops 2015: 56-62 - [c66]Theodoros Chondrogiannis, Panagiotis Bouros, Johann Gamper, Ulf Leser:
Alternative routing: k-shortest paths with limited overlap. SIGSPATIAL/GIS 2015: 68:1-68:4 - [c65]Alysson Bessani, Jörgen Brandt, Marc Bux, Vinicius Vielmo Cogo, Lora Dimitrova, Jim Dowling, Ali Gholami, Kamal Hakimzadeh, Michael Hummel, Mahmoud Ismail, Erwin Laure, Ulf Leser, Jan-Eric Litton, Roxanna Martinez, Salman Niazi, Jane Reichel, Karin Zimmermann:
BiobankCloud: A Platform for the Secure Storage, Sharing, and Processing of Large Biomedical Data Sets. Big-O(Q)/DMAH@VLDB 2015: 89-105 - 2014
- [j46]Mariana L. Neves, Ulf Leser:
A survey on annotation tools for the biomedical literature. Briefings Bioinform. 15(2): 327-340 (2014) - [j45]Harald Stachelscheid, Stefanie Seltmann, Fritz Lekschas, Jean-Fred Fontaine, Nancy Mah, Mariana L. Neves, Miguel A. Andrade-Navarro, Ulf Leser, Andreas Kurtz:
CellFinder: a cell data repository. Nucleic Acids Res. 42(Database-Issue): 950-958 (2014) - [j44]Johannes Starlinger, Bryan Brancotte, Sarah Cohen Boulakia, Ulf Leser:
Similarity Search for Scientific Workflows. Proc. VLDB Endow. 7(12): 1143-1154 (2014) - [j43]Sebastian Wandelt, Dong Deng, Stefan Gerdjikov, Shashwat Mishra, Petar Mitankin, Manish Patil, Enrico Siragusa, Alexander Tiskin, Wei Wang, Jiaying Wang, Ulf Leser:
State-of-the-art in string similarity search and join. SIGMOD Rec. 43(1): 64-76 (2014) - [j42]Alexander Alexandrov, Rico Bergmann, Stephan Ewen, Johann-Christoph Freytag, Fabian Hueske, Arvid Heise, Odej Kao, Marcus Leich, Ulf Leser, Volker Markl, Felix Naumann, Mathias Peters, Astrid Rheinländer, Matthias J. Sax, Sebastian Schelter, Mareike Höger, Kostas Tzoumas, Daniel Warneke:
The Stratosphere platform for big data analytics. VLDB J. 23(6): 939-964 (2014) - [c64]