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ORCIDTandy J. Warnow
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- affiliation: University of Illinois at Urbana-Champaign, Department of Computer Science, IL, USA
- affiliation: University of Texas at Austin, Department of Computer Science, TX, USA
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2020 – today
- 2024
[j90]Vikram Ramavarapu
, Fabio Jose Ayres, Minhyuk Park, Vidya Kamath Pailodi, João Alfredo Cardoso Lamy, Tandy J. Warnow, George Chacko:
CM++ - A Meta-method for Well-Connected Community Detection. J. Open Source Softw. 9(94): 6073 (2024)- [c81]Tandy J. Warnow, Yasamin Tabatabaee, Steven N. Evans:
Statistically Consistent Estimation of Rooted and Unrooted Level-1 Phylogenetic Networks from SNP Data. RECOMB-CG 2024: 3-23 - [i14]Minhyuk Park, Daniel Wang Feng, Siya Digra, The-Anh Vu-Le, George Chacko, Tandy J. Warnow:
Improved Community Detection using Stochastic Block Models. CoRR abs/2408.10464 (2024) - [i13]Lahari Anne, The-Anh Vu-Le, Minhyuk Park, Tandy J. Warnow, George Chacko:
Synthetic Networks That Preserve Edge Connectivity. CoRR abs/2408.13647 (2024) - [i12]Yasamin Tabatabaee, Eleanor Wedell, Minhyuk Park, Tandy J. Warnow:
FastEnsemble: A new scalable ensemble clustering method. CoRR abs/2409.02077 (2024) - 2023
- [j89]Baqiao Liu, Tandy J. Warnow:
Weighted ASTRID: fast and accurate species trees from weighted internode distances. Algorithms Mol. Biol. 18(1): 6 (2023) - [j88]Chengze Shen, Baqiao Liu, Kelly P. Williams, Tandy J. Warnow:
EMMA: a new method for computing multiple sequence alignments given a constraint subset alignment. Algorithms Mol. Biol. 18(1): 21 (2023) - [j87]Minhyuk Park, Stefan Ivanovic, Gillian Chu, Chengze Shen, Tandy J. Warnow:
UPP2: fast and accurate alignment of datasets with fragmentary sequences. Bioinform. 39(1) (2023) - [j86]Yasamin Tabatabaee, Chao Zhang, Tandy J. Warnow, Siavash Mirarab:
Phylogenomic branch length estimation using quartets. Bioinform. 39(Supplement-1): 185-193 (2023) - [j85]Yasamin Tabatabaee, Sebastien Roch, Tandy J. Warnow:
QR-STAR: A Polynomial-Time Statistically Consistent Method for Rooting Species Trees Under the Coalescent. J. Comput. Biol. 30(11): 1146-1181 (2023) - [j84]Eleanor Wedell, Yirong Cai, Tandy J. Warnow:
SCAMPP: Scaling Alignment-Based Phylogenetic Placement to Large Trees. IEEE ACM Trans. Comput. Biol. Bioinform. 20(2): 1417-1430 (2023) - [j83]Paul Zaharias, Vladimir Smirnov, Tandy J. Warnow:
Large-Scale Multiple Sequence Alignment and the Maximum Weight Trace Alignment Merging Problem. IEEE ACM Trans. Comput. Biol. Bioinform. 20(3): 1700-1712 (2023) - [c80]Minhyuk Park, Yasamin Tabatabaee, Vikram Ramavarapu, Baqiao Liu, Vidya Kamath Pailodi, Rajiv Ramachandran, Dmitriy Korobskiy, Fábio Ayres, George Chacko, Tandy J. Warnow:
Identifying Well-Connected Communities in Real-World and Synthetic Networks. COMPLEX NETWORKS (2) 2023: 3-14 - [c79]Yasamin Tabatabaee, Sébastien Roch, Tandy J. Warnow:
Statistically Consistent Rooting of Species Trees Under the Multispecies Coalescent Model. RECOMB 2023: 41-57 - [c78]Chengze Shen, Baqiao Liu, Kelly P. Williams, Tandy J. Warnow:
EMMA: Adding Sequences into a Constraint Alignment with High Accuracy and Scalability (Abstract). WABI 2023: 2:1-2:2 - [c77]Eleanor Wedell, Chengze Shen, Tandy J. Warnow:
BATCH-SCAMPP: Scaling Phylogenetic Placement Methods to Place Many Sequences (Abstract). WABI 2023: 3:1-3:2 - [i11]Minhyuk Park, Yasamin Tabatabaee, Baqiao Liu, Vidya Kamath Pailodi, Vikram Ramavarapu, Rajiv Ramachandran, Dmitriy Korobskiy, Fábio Ayres, George Chacko, Tandy J. Warnow:
Well-Connected Communities in Real-World Networks. CoRR abs/2303.02813 (2023) - [i10]James Willson, Tandy J. Warnow:
Axioms for Distanceless Graph Partitioning. CoRR abs/2309.09386 (2023) - 2022
- [j82]Chengze Shen, Paul Zaharias, Tandy J. Warnow:
MAGUS+eHMMs: improved multiple sequence alignment accuracy for fragmentary sequences. Bioinform. 38(4): 918-924 (2022) - [j81]Paul Zaharias, Martin Grosshauser, Tandy J. Warnow:
Re-evaluating Deep Neural Networks for Phylogeny Estimation: The Issue of Taxon Sampling. J. Comput. Biol. 29(1): 74-89 (2022) - [j80]Baqiao Liu, Tandy J. Warnow:
Scalable Species Tree Inference with External Constraints. J. Comput. Biol. 29(7): 664-678 (2022) - [j79]Chengze Shen, Minhyuk Park, Tandy J. Warnow:
WITCH: Improved Multiple Sequence Alignment Through Weighted Consensus Hidden Markov Model Alignment. J. Comput. Biol. 29(8): 782-801 (2022) - [j78]Eleanor Wedell, Minhyuk Park, Dmitriy Korobskiy, Tandy J. Warnow, George Chacko:
Center-periphery structure in research communities. Quant. Sci. Stud. 3(1): 289-314 (2022) - [j77]Akhil Jakatdar, Baqiao Liu, Tandy J. Warnow, George Chacko:
AOC: Assembling overlapping communities. Quant. Sci. Stud. 3(4): 1079-1096 (2022) - [c76]Baqiao Liu, Tandy J. Warnow:
Fast and Accurate Species Trees from Weighted Internode Distances. WABI 2022: 8:1-8:24 - [i9]Akhil Jakatdar, Baqiao Liu, Tandy J. Warnow, George Chacko:
AOC; Assembling Overlapping Communities. CoRR abs/2208.04842 (2022) - 2021
- [j76]Minhyuk Park, Paul Zaharias, Tandy J. Warnow:
Disjoint Tree Mergers for Large-Scale Maximum Likelihood Tree Estimation. Algorithms 14(5): 148 (2021) - [j75]Xilin Yu, Thien Le, Sarah A. Christensen, Erin K. Molloy, Tandy J. Warnow:
Using Robinson-Foulds supertrees in divide-and-conquer phylogeny estimation. Algorithms Mol. Biol. 16(1): 12 (2021) - [j74]Vladimir Smirnov, Tandy J. Warnow:
MAGUS: Multiple sequence Alignment using Graph clUStering. Bioinform. 37(12): 1666-1672 (2021) - [j73]Nidhi Shah, Erin K. Molloy, Mihai Pop, Tandy J. Warnow:
TIPP2: metagenomic taxonomic profiling using phylogenetic markers. Bioinform. 37(13): 1839-1845 (2021) - [j72]Payam Dibaeinia, Shayan Tabe-Bordbar, Tandy J. Warnow:
FASTRAL: improving scalability of phylogenomic analysis. Bioinform. 37(16): 2317-2324 (2021) - [j71]Maya Gupta, Paul Zaharias, Tandy J. Warnow:
Accurate large-scale phylogeny-aware alignment using BAli-Phy. Bioinform. 37(24): 4677-4683 (2021) - [j70]Brandon Legried, Erin K. Molloy, Tandy J. Warnow, Sébastien Roch:
Polynomial-Time Statistical Estimation of Species Trees Under Gene Duplication and Loss. J. Comput. Biol. 28(5): 452-468 (2021) - [j69]Shreya Chandrasekharan, Mariam Zaka, Stephen A. Gallo, Wenxi Zhao, Dmitriy Korobskiy, Tandy J. Warnow, George Chacko:
Finding scientific communities in citation graphs: Articles and authors. Quant. Sci. Stud. 2(1): 184-203 (2021) - [j68]Thien Le, Aaron Sy, Erin K. Molloy, Qiuyi Zhang, Satish Rao, Tandy J. Warnow:
Using Constrained-INC for Large-Scale Gene Tree and Species Tree Estimation. IEEE ACM Trans. Comput. Biol. Bioinform. 18(1): 2-15 (2021) - [j67]Srilakshmi Pattabiraman, Tandy J. Warnow:
Profile Hidden Markov Models Are Not Identifiable. IEEE ACM Trans. Comput. Biol. Bioinform. 18(1): 162-172 (2021) - [c75]Eleanor Wedell, Yirong Cai, Tandy J. Warnow:
Scalable and Accurate Phylogenetic Placement Using pplacer-XR. AlCoB 2021: 94-105 - [c74]James Willson, Mrinmoy Saha Roddur, Tandy J. Warnow:
Comparing Methods for Species Tree Estimation with Gene Duplication and Loss. AlCoB 2021: 106-117 - [c73]Paul Zaharias, Vladimir Smirnov, Tandy J. Warnow:
The Maximum Weight Trace Alignment Merging Problem. AlCoB 2021: 159-171 - [c72]Elizabeth R. Koning, Malachi Phillips, Tandy J. Warnow:
ppIacerDC: a new scalable phylogenetic placement method. BCB 2021: 3:1-3:9 - [i8]Eleanor Wedell, Minhyuk Park, Dmitriy Korobskiy, Tandy J. Warnow, George Chacko:
Center-Periphery Structure in Communities: Extracellular Vesicles. CoRR abs/2111.07410 (2021) - 2020
- [j66]Sarah A. Christensen, Erin K. Molloy, Pranjal Vachaspati, Ananya Yammanuru, Tandy J. Warnow:
Non-parametric correction of estimated gene trees using TRACTION. Algorithms Mol. Biol. 15(1): 1 (2020) - [j65]Erin K. Molloy, Tandy J. Warnow:
FastMulRFS: fast and accurate species tree estimation under generic gene duplication and loss models. Bioinform. 36(Supplement-1): i57-i65 (2020) - [j64]James R. Bradley, Sitaram Devarakonda, Avon Davey, Dmitriy Korobskiy, Siyu Liu, Djamil Lakhdar-Hamina, Tandy J. Warnow, George Chacko:
Co-citations in context: Disciplinary heterogeneity is relevant. Quant. Sci. Stud. 1(1): 264-276 (2020) - [j63]Sitaram Devarakonda, James R. Bradley, Dmitriy Korobskiy, Tandy J. Warnow, George Chacko:
Frequently cocited publications: Features and kinetics. Quant. Sci. Stud. 1(3): 1223-1241 (2020) - [j62]Sitaram Devarakonda, Dmitriy Korobskiy, Tandy J. Warnow, George Chacko:
Viewing computer science through citation analysis: Salton and Bergmark Redux. Scientometrics 125(1): 271-287 (2020) - [c71]Brandon Legried, Erin K. Molloy, Tandy J. Warnow, Sébastien Roch:
Polynomial-Time Statistical Estimation of Species Trees Under Gene Duplication and Loss. RECOMB 2020: 120-135 - [c70]Xilin Yu, Thien Le, Sarah A. Christensen, Erin K. Molloy, Tandy J. Warnow:
Advancing Divide-And-Conquer Phylogeny Estimation Using Robinson-Foulds Supertrees. WABI 2020: 15:1-15:17 - [i7]Sitaram Devarakonda, James R. Bradley, Dmitriy Korobskiy, Tandy J. Warnow, George Chacko:
Frequently Co-cited Publications: Features and Kinetics. CoRR abs/2005.04793 (2020) - [i6]Shreya Chandrasekharan, Mariam Zaka, Stephen A. Gallo, Tandy J. Warnow, George Chacko:
Finding Scientific Communities In Citation Graphs: Convergent Clustering. CoRR abs/2007.14452 (2020)
2010 – 2019
- 2019
- [j61]Qiuyi Zhang, Satish Rao, Tandy J. Warnow:
Constrained incremental tree building: new absolute fast converging phylogeny estimation methods with improved scalability and accuracy. Algorithms Mol. Biol. 14(1): 2:1-2:12 (2019) - [j60]Erin K. Molloy, Tandy J. Warnow:
Statistically consistent divide-and-conquer pipelines for phylogeny estimation using NJMerge. Algorithms Mol. Biol. 14(1): 14:1-14:17 (2019) - [j59]Nidhi Shah, Michael G. Nute, Tandy J. Warnow, Mihai Pop:
Misunderstood parameter of NCBI BLAST impacts the correctness of bioinformatics workflows. Bioinform. 35(9): 1613-1614 (2019) - [j58]Erin K. Molloy, Tandy J. Warnow:
TreeMerge: a new method for improving the scalability of species tree estimation methods. Bioinform. 35(14): i417-i426 (2019) - [c69]Tandy J. Warnow:
New Divide-and-Conquer Techniques for Large-Scale Phylogenetic Estimation. AlCoB 2019: 3-21 - [c68]Thien Le, Aaron Sy, Erin K. Molloy, Qiuyi (Richard) Zhang, Satish Rao, Tandy J. Warnow:
Using INC Within Divide-and-Conquer Phylogeny Estimation. AlCoB 2019: 167-178 - [c67]Sarah A. Christensen, Erin K. Molloy, Pranjal Vachaspati, Tandy J. Warnow:
TRACTION: Fast Non-Parametric Improvement of Estimated Gene Trees. WABI 2019: 4:1-4:16 - [i5]James R. Bradley, Sitaram Devarakonda, Avon Davey, Dmitriy Korobskiy, Siyu Liu, Djamil Lakhdar-Hamina, Tandy J. Warnow, George Chacko:
Co-citations in context: disciplinary heterogeneity is relevant. CoRR abs/1909.08738 (2019) - [i4]Sitaram Devarakonda, Dmitriy Korobskiy, Tandy J. Warnow, George Chacko:
Viewing Computer Science through Citation Analysis; Salton and Bergmark Redux. CoRR abs/1912.10521 (2019) - 2018
- [j57]Md. Shamsuzzoha Bayzid, Tandy J. Warnow:
Gene tree parsimony for incomplete gene trees: addressing true biological loss. Algorithms Mol. Biol. 13(1): 1:1-1:12 (2018) - [j56]Sarah A. Christensen, Erin K. Molloy, Pranjal Vachaspati, Tandy J. Warnow:
OCTAL: Optimal Completion of gene trees in polynomial time. Algorithms Mol. Biol. 13(1): 6:1-6:18 (2018) - [j55]Kodi Collins, Tandy J. Warnow:
PASTA for proteins. Bioinform. 34(22): 3939-3941 (2018) - [j54]Nicola J. Mulder, Russell Schwartz, Michelle D. Brazas, Cath Brooksbank, Bruno A. Gaëta, Sarah L. Morgan, Mark A. Pauley, Anne G. Rosenwald, Gabriella Rustici, Michael L. Sierk, Tandy J. Warnow, Lonnie R. Welch:
The development and application of bioinformatics core competencies to improve bioinformatics training and education. PLoS Comput. Biol. 14(2) (2018) - [c66]Srilakshmi Pattabiraman, Tandy J. Warnow:
Are Profile Hidden Markov Models Identifiable? BCB 2018: 448-456 - [c65]Erin K. Molloy, Tandy J. Warnow:
NJMerge: A Generic Technique for Scaling Phylogeny Estimation Methods and Its Application to Species Trees. RECOMB-CG 2018: 260-276 - [c64]Qiuyi (Richard) Zhang, Satish Rao, Tandy J. Warnow:
New Absolute Fast Converging Phylogeny Estimation Methods with Improved Scalability and Accuracy. WABI 2018: 8:1-8:12 - [i3]Sebastien Roch, Michael Nute, Tandy J. Warnow:
Long-branch attraction in species tree estimation: inconsistency of partitioned likelihood and topology-based summary methods. CoRR abs/1803.02800 (2018) - 2017
- [j53]Pranjal Vachaspati, Tandy J. Warnow:
FastRFS: fast and accurate Robinson-Foulds Supertrees using constrained exact optimization. Bioinform. 33(5): 631-639 (2017) - [c63]Tandy J. Warnow:
Genome-scale Estimation of the Tree of Life. BCB 2017: 634 - [c62]Tandy J. Warnow:
Computational Challenges in Constructing the Tree of Life. IPDPS 2017: 1 - [c61]Pranjal Vachaspati, Tandy J. Warnow:
Enhancing Searches for Optimal Trees Using SIESTA. RECOMB-CG 2017: 232-255 - [c60]Md. Shamsuzzoha Bayzid, Tandy J. Warnow:
Gene Tree Parsimony for Incomplete Gene Trees. WABI 2017: 2:1-2:13 - [c59]Sarah A. Christensen, Erin K. Molloy, Pranjal Vachaspati, Tandy J. Warnow:
Optimal Completion of Incomplete Gene Trees in Polynomial Time Using OCTAL. WABI 2017: 27:1-27:14 - 2016
- [j52]Lawrence H. Uricchio, Tandy J. Warnow, Noah A. Rosenberg:
An analytical upper bound on the number of loci required for all splits of a species tree to appear in a set of gene trees. BMC Bioinform. 17(S-14): 241-250 (2016) - [j51]Lonnie R. Welch, Cath Brooksbank, Russell Schwartz, Sarah L. Morgan, Bruno A. Gaëta, Alastair M. Kilpatrick, Daniel Mietchen, Benjamin L. Moore, Nicola J. Mulder, Mark A. Pauley, William R. Pearson, Predrag Radivojac, Naomi Rosenberg, Anne G. Rosenwald, Gabriella Rustici, Tandy J. Warnow:
Applying, Evaluating and Refining Bioinformatics Core Competencies (An Update from the Curriculum Task Force of ISCB's Education Committee). PLoS Comput. Biol. 12(5) (2016) - [i2]Gene Myers, Mihai Pop, Knut Reinert, Tandy J. Warnow:
Next Generation Sequencing (Dagstuhl Seminar 16351). Dagstuhl Reports 6(8): 91-130 (2016) - 2015
- [j50]Siavash Mirarab, Tandy J. Warnow:
ASTRAL-II: coalescent-based species tree estimation with many hundreds of taxa and thousands of genes. Bioinform. 31(12): 44-52 (2015) - [j49]Siavash Mirarab, Nam Nguyen, Sheng Guo, Li-San Wang, Junhyong Kim, Tandy J. Warnow:
PASTA: Ultra-Large Multiple Sequence Alignment for Nucleotide and Amino-Acid Sequences. J. Comput. Biol. 22(5): 377-386 (2015) - [c58]Nam-phuong Nguyen, Siavash Mirarab, Keerthana Kumar, Tandy J. Warnow:
Ultra-Large Alignments Using Ensembles of Hidden Markov Models. RECOMB 2015: 259-260 - [i1]Nam-phuong Nguyen, Siavash Mirarab, Keerthana Kumar, Tandy J. Warnow:
Ultra-large alignments using Phylogeny-aware Profiles. CoRR abs/1504.01142 (2015) - 2014
- [j48]Siavash Mirarab, Rezwana Reaz, Md. Shamsuzzoha Bayzid, Théo Zimmermann, M. Shel Swenson, Tandy J. Warnow:
ASTRAL: genome-scale coalescent-based species tree estimation. Bioinform. 30(17): 541-548 (2014) - [j47]Nam-phuong Nguyen, Siavash Mirarab, Bo Liu, Mihai Pop, Tandy J. Warnow:
TIPP: taxonomic identification and phylogenetic profiling. Bioinform. 30(24): 3548-3555 (2014) - [c57]Siavash Mirarab, Nam-phuong Nguyen, Tandy J. Warnow:
PASTA: Ultra-Large Multiple Sequence Alignment. RECOMB 2014: 177-191 - 2013
- [j46]Md. Shamsuzzoha Bayzid, Tandy J. Warnow:
Naive binning improves phylogenomic analyses. Bioinform. 29(18): 2277-2284 (2013) - [c56]Luay Nakhleh, Noah A. Rosenberg, Tandy J. Warnow:
Session introduction. Pacific Symposium on Biocomputing 2013: 247-249 - [c55]Md. Shamsuzzoha Bayzid, Siavash Mirarab, Tandy J. Warnow:
Inferring Optimal Species Trees Under Gene Duplication and Loss. Pacific Symposium on Biocomputing 2013: 250-261 - [p3]Tandy J. Warnow:
Large-Scale Multiple Sequence Alignment and Phylogeny Estimation. Models and Algorithms for Genome Evolution 2013: 85-146 - 2012
- [j45]Nam-phuong Nguyen, Siavash Mirarab, Tandy J. Warnow:
MRL and SuperFine+MRL: new supertree methods. Algorithms Mol. Biol. 7: 3 (2012) - [j44]Serita M. Nelesen, Kevin Liu, Li-San Wang, C. Randal Linder, Tandy J. Warnow:
DACTAL: divide-and-conquer trees (almost) without alignments. Bioinform. 28(12): 274-282 (2012) - [j43]Md. Shamsuzzoha Bayzid, Tandy J. Warnow:
Estimating Optimal Species Trees from Incomplete Gene Trees Under Deep Coalescence. J. Comput. Biol. 19(6): 591-605 (2012) - [c54]Siavash Mirarab, Nam Nguyen, Tandy J. Warnow:
SEPP: SATe -Enabled Phylogenetic Placement. Pacific Symposium on Biocomputing 2012: 247-258 - [c53]Diogo Telmo Neves, Tandy J. Warnow, João Luís Sobral, Keshav Pingali:
Parallelizing SuperFine. SAC 2012: 1361-1367 - 2011
- [j42]M. Shel Swenson, Rahul Suri, C. Randal Linder, Tandy J. Warnow:
An experimental study of Quartets MaxCut and other supertree methods. Algorithms Mol. Biol. 6: 7 (2011) - [j41]Siavash Mirarab, Tandy J. Warnow:
FASTSP: linear time calculation of alignment accuracy. Bioinform. 27(23): 3250-3258 (2011) - [j40]Jimmy Yang, Tandy J. Warnow:
Fast and accurate methods for phylogenomic analyses. BMC Bioinform. 12(S-9): S4 (2011) - [j39]Yun Yu, Tandy J. Warnow, Luay Nakhleh:
Algorithms for MDC-Based Multi-Locus Phylogeny Inference: Beyond Rooted Binary Gene Trees on Single Alleles. J. Comput. Biol. 18(11): 1543-1559 (2011) - [j38]Li-San Wang, James H. Leebens-Mack, P. Kerr Wall, Kevin Beckmann, Claude W. dePamphilis, Tandy J. Warnow:
The Impact of Multiple Protein Sequence Alignment on Phylogenetic Estimation. IEEE ACM Trans. Comput. Biol. Bioinform. 8(4): 1108-1119 (2011) - [c52]Yun Yu, Tandy J. Warnow, Luay Nakhleh:
Algorithms for MDC-Based Multi-locus Phylogeny Inference. RECOMB 2011: 531-545 - 2010
- [j37]M. Shel Swenson, François Barbançon, Tandy J. Warnow, C. Randal Linder:
A simulation study comparing supertree and combined analysis methods using SMIDGen. Algorithms Mol. Biol. 5: 8 (2010) - [c51]M. Shel Swenson, Rahul Suri, C. Randal Linder, Tandy J. Warnow:
An Experimental Study of Quartets MaxCut and Other Supertree Methods. WABI 2010: 288-299
2000 – 2009
- 2009
- [j36]Kevin Liu, Serita M. Nelesen, Sindhu Raghavan, C. Randal Linder, Tandy J. Warnow:
Barking Up The Wrong Treelength: The Impact of Gap Penalty on Alignment and Tree Accuracy. IEEE ACM Trans. Comput. Biol. Bioinform. 6(1): 7-21 (2009) - [c50]M. Shel Swenson, François Barbançon, C. Randal Linder, Tandy J. Warnow:
A Simulation Study Comparing Supertree and Combined Analysis Methods Using SMIDGen. WABI 2009: 333-344 - [e3]Steven Salzberg, Tandy J. Warnow:
Algorithms in Bioinformatics, 9th International Workshop, WABI 2009, Philadelphia, PA, USA, September 12-13, 2009. Proceedings. Lecture Notes in Computer Science 5724, Springer 2009, ISBN 978-3-642-04240-9 [contents] - 2008
- [j35]Sagi Snir, Tandy J. Warnow, Satish Rao:
Short Quartet Puzzling: A New Quartet-Based Phylogeny Reconstruction Algorithm. J. Comput. Biol. 15(1): 91-103 (2008) - [j34]Johanna Nichols, Tandy J. Warnow:
Tutorial on Computational Linguistic Phylogeny. Lang. Linguistics Compass 2(5): 760-820 (2008) - [c49]Michael Brudno, Bernard M. E. Moret, C. Randal Linder, Tandy J. Warnow:
Session Introduction. Pacific Symposium on Biocomputing 2008: 1-2 - [c48]Serita M. Nelesen, Kevin Liu, D. Zhao, C. Randal Linder, Tandy J. Warnow:
The Effect of the Guide Tree on Multiple Sequence Alignments and Subsequent Phylogenetic Analysis. Pacific Symposium on Biocomputing 2008: 25-36 - 2007
- [p2]Bernard M. E. Moret, Jijun Tang, Tandy J. Warnow:
Reconstructing phylogenies from gene-content and gene-order data. Mathematics of Evolution and Phylogeny 2007 - [p1]Li-San Wang, Tandy J. Warnow:
Distance-based genome rearrangement phylogeny. Mathematics of Evolution and Phylogeny 2007 - 2006
- [j33]Li-San Wang, Tandy J. Warnow:
Reconstructing Chromosomal Evolution. SIAM J. Comput. 36(1): 99-131 (2006) - [j32]Ganeshkumar Ganapathy, Barbara Goodson, Robert K. Jansen, Hai-Son Le, Vijaya Ramachandran, Tandy J. Warnow:
Pattern Identification in Biogeography. IEEE ACM Trans. Comput. Biol. Bioinform. 3(4): 334-346 (2006) - 2005
- [j31]Luay Nakhleh, Tandy J. Warnow, C. Randal Linder, Katherine St. John:
Reconstructing Reticulate Evolution in SpeciesTheory and Practice. J. Comput. Biol. 12(6): 796-811 (2005) - [c47]