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2020 – today
- 2023
[j60]Wan Xiang Shen, Shu Ran Liang, Yu Yang Jiang, Yu Zong Chen
:
Enhanced metagenomic deep learning for disease prediction and consistent signature recognition by restructured microbiome 2D representations. Patterns 4(1): 100658 (2023)- [j59]Wan Xiang Shen, Yu Zong Chen:
Toward ordered -omics data science: Researchers on the magic of turning metagenomic chaos into image-like patterns. Patterns 4(1): 100673 (2023) - 2022
- [j58]Fengcheng Li, Jiayi Yin, Mingkun Lu, Qingxia Yang, Zhenyu Zeng, Bing Zhang, Zhaorong Li, Yunqing Qiu, Haibin Dai, Yuzong Chen, Feng Zhu:
ConSIG: consistent discovery of molecular signature from OMIC data. Briefings Bioinform. 23(4) (2022) - [j57]Shanshan Wang, Yu Zong Chen, Songsen Fu, Yufen Zhao:
In silico approaches uncovering the systematic function of N-phosphorylated proteins in human cells. Comput. Biol. Medicine 151(Part): 106280 (2022) - [j56]Donghyuk Kim, Chengshuo Yu, Shanshan Xie, Yuzong Chen, Joo-Young Kim, Bongjin Kim, Jaydeep P. Kulkarni, Tony Tae-Hyoung Kim:
An Overview of Processing-in-Memory Circuits for Artificial Intelligence and Machine Learning. IEEE J. Emerg. Sel. Topics Circuits Syst. 12(2): 338-353 (2022) - [j55]Ying Zhou, Yintao Zhang, Xichen Lian, Fengcheng Li, Chaoxin Wang, Feng Zhu, Yunqing Qiu, Yuzong Chen:
Therapeutic target database update 2022: facilitating drug discovery with enriched comparative data of targeted agents. Nucleic Acids Res. 50(D1): 1398-1407 (2022) - [c8]Yuncheng Lu, Zehao Li, Yuzong Chen, Tony Tae-Hyoung Kim:
A 181µW Real-Time 3-D Hand Gesture Recognition System based on Bi-directional Convolution and Computing-Efficient Feature Clustering. CICC 2022: 1-2 - [c7]Yuzong Chen, Junjie Mu, Hyunjoon Kim, Lu Lu, Tony Tae-Hyoung Kim:
A Reconfigurable 8T SRAM Macro for Bit-Parallel Searching and Computing In-Memory. ISCAS 2022: 2556-2560 - 2021
- [j54]Jing-Fang Yang, Fan Wang, Yu Zong Chen, Ge-Fei Hao, Guangfu Yang:
Erratum to: LARMD: integration of bioinformatic resources to profile ligand-driven protein dynamics with a case on the activation of estrogen receptor. Briefings Bioinform. 22(1): 605 (2021) - [j53]Changjiang Zhou, Yi Jin, Yuzong Chen, Shan Huang, Rengpeng Huang, Yuhong Wang, Youcai Zhao, Yao Chen, Lingchuan Guo, Jun Liao:
Histopathology classification and localization of colorectal cancer using global labels by weakly supervised deep learning. Comput. Medical Imaging Graph. 88: 101861 (2021) - [j52]Xian Zeng, Xue Yang, Jiajun Fan, Ying Tan, Lingyi Ju, Wanxiang Shen, Yali Wang, Xinghao Wang, Weiping Chen, Dianwen Ju, Yu Zong Chen:
MASI: microbiota - active substance interactions database. Nucleic Acids Res. 49(Database-Issue): D776-D782 (2021) - [j51]Wan Xiang Shen, Xian Zeng, Feng Zhu, Ya li Wang, Chu Qin, Ying Tan, Yu Yang Jiang, Yu Zong Chen:
Out-of-the-box deep learning prediction of pharmaceutical properties by broadly learned knowledge-based molecular representations. Nat. Mach. Intell. 3(4): 334-343 (2021) - [j50]Yuzong Chen, Lu Lu, Bongjin Kim, Tony Tae-Hyoung Kim:
A Reconfigurable 4T2R ReRAM Computing In-Memory Macro for Efficient Edge Applications. IEEE Open J. Circuits Syst. 2: 210-222 (2021) - [c6]Yuzong Chen, Lu Lu, Yuncheng Lu, Tony Tae-Hyoung Kim:
A Multi-Functional 4T2R ReRAM Macro Enabling 2-Dimensional Access and Computing In-Memory. ISCAS 2021: 1-5 - [c5]Lu Lu, Yu Zong Chen, Tony Tae-Hyoung Kim:
A Configurable Randomness Enhanced RRAM PUF with Biased Current Sensing Scheme. ISCAS 2021: 1-5 - [c4]Vishal Sharma, Ju Eon Kim, Yong-Jun Jo, Yuzong Chen, Tony Tae-Hyoung Kim:
AND8T SRAM Macro with Improved Linearity for Multi-Bit In-Memory Computing. ISCAS 2021: 1-5 - 2020
- [j49]Jing Tang, Jianbo Fu, Yunxia Wang, Bo Li, Yinghong Li, Qingxia Yang, Xuejiao Cui, Jiajun Hong, Xiaofeng Li, Yuzong Chen, Weiwei Xue, Feng Zhu:
ANPELA: analysis and performance assessment of the label-free quantification workflow for metaproteomic studies. Briefings Bioinform. 21(2): 621-636 (2020) - [j48]Ying Hong Li, Xiao Xu Li, Jiajun Hong, Yunxia Wang, Jianbo Fu, Hong Yang, Chun Yan Yu, Feng Cheng Li, Jie Hu, Weiwei Xue, Yu Yang Jiang, Yu Zong Chen, Feng Zhu:
Clinical trials, progression-speed differentiating features and swiftness rule of the innovative targets of first-in-class drugs. Briefings Bioinform. 21(2): 649-662 (2020) - [j47]Qingxia Yang, Bo Li, Jing Tang, Xuejiao Cui, Yunxia Wang, Xiaofeng Li, Jie Hu, Yuzong Chen, Weiwei Xue, Yan Lou, Yunqing Qiu, Feng Zhu:
Consistent gene signature of schizophrenia identified by a novel feature selection strategy from comprehensive sets of transcriptomic data. Briefings Bioinform. 21(3): 1058-1068 (2020) - [j46]Jing-Fang Yang, Fan Wang, Yu Zong Chen, Ge-Fei Hao, Guangfu Yang:
LARMD: integration of bioinformatic resources to profile ligand-driven protein dynamics with a case on the activation of estrogen receptor. Briefings Bioinform. 21(6): 2206-2218 (2020) - [j45]Yunxia Wang, Song Zhang, Fengcheng Li, Ying Zhou, Ying Zhang, Zhengwen Wang, Runyuan Zhang, Jiang Zhu, Yuxiang Ren, Ying Tan, Chu Qin, Yinghong Li, Xiaoxu Li, Yuzong Chen, Feng Zhu:
Therapeutic target database 2020: enriched resource for facilitating research and early development of targeted therapeutics. Nucleic Acids Res. 48(Database-Issue): D1031-D1041 (2020) - [j44]Yuzong Chen, Lu Lu, Bongjin Kim, Tony Tae-Hyoung Kim:
Reconfigurable 2T2R ReRAM Architecture for Versatile Data Storage and Computing In-Memory. IEEE Trans. Very Large Scale Integr. Syst. 28(12): 2636-2649 (2020) - [c3]Yuzong Chen, Lu Lu, Bongjin Kim, Tony Tae-Hyoung Kim:
Reconfigurable 2T2R ReRAM with Split Word-Lines for TCAM Operation and In-Memory Computing. ISCAS 2020: 1-5
2010 – 2019
- 2019
- [j43]Xian Zeng, Peng Zhang, Yali Wang, Chu Qin, Shangying Chen, Weidong He, Lin Tao, Ying Tan, Dan Gao, Bo-hua Wang, Zhe Chen, Weiping Chen, Yu Yang Jiang, Yu Zong Chen:
CMAUP: a database of collective molecular activities of useful plants. Nucleic Acids Res. 47(Database-Issue): D1118-D1127 (2019) - [i1]Chu Qin, Ying Tan, Shangying Chen, Xian Zeng, Xingxing Qi, Tian Jin, Huan Shi, Yiwei Wan, Yu Chen, Jingfeng Li, Weidong He, Yali Wang, Peng Zhang, Feng Zhu, Hongping Zhao, Yu Yang Jiang, Yuzong Chen:
Clustering Bioactive Molecules in 3D Chemical Space with Unsupervised Deep Learning. CoRR abs/1902.03429 (2019) - 2018
- [j42]Ying Hong Li, Chun Yan Yu, Xiao Xu Li, Peng Zhang, Jing Tang, Qingxia Yang, Tingting Fu, Xiaoyu Zhang, Xuejiao Cui, Gao Tu, Yang Zhang, Shuang Li, Fengyuan Yang, Qiu Sun, Chu Qin, Xian Zeng, Zhe Chen, Yu Zong Chen, Feng Zhu:
Therapeutic target database update 2018: enriched resource for facilitating bench-to-clinic research of targeted therapeutics. Nucleic Acids Res. 46(Database-Issue): D1121-D1127 (2018) - [j41]Xian Zeng, Peng Zhang, Weidong He, Chu Qin, Shangying Chen, Lin Tao, Yali Wang, Ying Tan, Dan Gao, Bo-hua Wang, Zhe Chen, Weiping Chen, Yu Yang Jiang, Yu Zong Chen:
NPASS: natural product activity and species source database for natural product research, discovery and tool development. Nucleic Acids Res. 46(Database-Issue): D1217-D1222 (2018) - 2017
- [j40]Peng Zhang, Lin Tao, Xian Zeng, Chu Qin, Shangying Chen, Feng Zhu, Zerong Li, Yu Yang Jiang, Weiping Chen, Yuzong Chen:
A protein network descriptor server and its use in studying protein, disease, metabolic and drug targeted networks. Briefings Bioinform. 18(6): 1057-1070 (2017) - [j39]Xian Zeng, Lin Tao, Peng Zhang, Chu Qin, Shangying Chen, Weidong He, Ying Tan, Hong Xia Liu, Sheng-Yong Yang, Zhe Chen, Yu Yang Jiang, Yu Zong Chen:
HEROD: a human ethnic and regional specific omics database. Bioinform. 33(20): 3276-3282 (2017) - [j38]Bo Li, Jing Tang, Qingxia Yang, Shuang Li, Xuejiao Cui, Yinghong Li, Yuzong Chen, Weiwei Xue, Xiaofeng Li, Feng Zhu:
NOREVA: normalization and evaluation of MS-based metabolomics data. Nucleic Acids Res. 45(Webserver-Issue): W162-W170 (2017) - 2016
- [j37]Hong Yang, Chu Qin, Ying Hong Li, Lin Tao, Jin Zhou, Chun Yan Yu, Feng Xu, Zhe Chen, Feng Zhu, Yu Zong Chen:
Therapeutic target database update 2016: enriched resource for bench to clinical drug target and targeted pathway information. Nucleic Acids Res. 44(Database-Issue): 1069-1074 (2016) - 2015
- [j36]Cheng Zhang, Lin Tao, Chu Qin, Peng Zhang, Shangying Chen, Xian Zeng, Feng Xu, Zhe Chen, Sheng-Yong Yang, Yu Zong Chen:
CFam: a chemical families database based on iterative selection of functional seeds and seed-directed compound clustering. Nucleic Acids Res. 43(Database-Issue): 558-565 (2015) - 2014
- [j35]Shu Zhou, Guo-Bo Li, Lu-Yi Huang, Huan-Zhang Xie, Ying-Lan Zhao, Yu Zong Chen, Lin-Li Li, Sheng-Yong Yang:
A prediction model of drug-induced ototoxicity developed by an optimal support vector machine (SVM) method. Comput. Biol. Medicine 51: 122-127 (2014) - [j34]Chu Qin, Cheng Zhang, Feng Zhu, Feng Xu, Shangying Chen, Peng Zhang, Ying Hong Li, Sheng-Yong Yang, Yu-Quan Wei, Lin Tao, Yu Zong Chen:
Therapeutic target database update 2014: a resource for targeted therapeutics. Nucleic Acids Res. 42(Database-Issue): 1118-1123 (2014) - 2012
- [j33]Ju He, Guobing Yang, Hanbing Rao, Ze-Rong Li, Xianping Ding, Yu Zong Chen:
Prediction of human major histocompatibility complex class II binding peptides by continuous kernel discrimination method. Artif. Intell. Medicine 55(2): 107-115 (2012) - [j32]Feng Zhu, Zhe Shi, Chu Qin, Lin Tao, Xin Liu, Feng Xu, Li Zhang, Yang Song, Xianghui Liu, Jing-Xian Zhang, Bu-Cong Han, Peng Zhang, Yuzong Chen:
Therapeutic target database update 2012: a resource for facilitating target-oriented drug discovery. Nucleic Acids Res. 40(Database-Issue): 1128-1136 (2012) - 2011
- [j31]XiaoNa Wei, Bu-Cong Han, Jing-Xian Zhang, X. H. Liu, C. Y. Tan, Y. Y. Jiang, Boon Chuan Low, Bruce Tidor, Yu Zong Chen:
An Integrated Mathematical Model of Thrombin-, Histamine-and VEGF-Mediated Signalling in Endothelial Permeability. BMC Syst. Biol. 5: 112 (2011) - [j30]Pankaj Kumar, Xiao Hua Ma, Xianghui Liu, Jia Jia, Bu-Cong Han, Ying Xue, Ze-Rong Li, Sheng-Yong Yang, Yu-Quan Wei, Yu Zong Chen:
Effect of training data size and noise level on support vector machines virtual screening of genotoxic compounds from large compound libraries. J. Comput. Aided Mol. Des. 25(5): 455-467 (2011) - [j29]Hao Ye, Li Ye, Hong Kang, Duanfeng Zhang, Lin Tao, Kailin Tang, Xueping Liu, Ruixin Zhu, Qi Liu, Yu Zong Chen, Yixue Li, Zhi-Wei Cao:
HIT: linking herbal active ingredients to targets. Nucleic Acids Res. 39(Database-Issue): 1055-1059 (2011) - [j28]H. B. Rao, F. Zhu, G. B. Yang, Z. R. Li, Yu Zong Chen:
Update of PROFEAT: a web server for computing structural and physicochemical features of proteins and peptides from amino acid sequence. Nucleic Acids Res. 39(Web-Server-Issue): 385-390 (2011) - 2010
- [j27]Hanbing Rao, Ze-Rong Li, Xiang-Yuan Li, Xiao Hua Ma, Choong Yong Ung, Hu Li, Xianghui Liu, Yu Zong Chen:
Identification of small molecule aggregators from large compound libraries by support vector machines. J. Comput. Chem. 31(4): 752-763 (2010) - [j26]Xue-Gang Yang, Wei Lv, Yu Zong Chen, Ying Xue:
In silico prediction and screening of gamma-secretase inhibitors by molecular descriptors and machine learning methods. J. Comput. Chem. 31(6): 1249-1258 (2010) - [j25]Feng Zhu, Bu-Cong Han, Pankaj Kumar, Xianghui Liu, Xiao Hua Ma, XiaoNa Wei, Lu Huang, Yangfan Guo, LianYi Han, ChanJuan Zheng, Yu Zong Chen:
Update of TTD: Therapeutic Target Database. Nucleic Acids Res. 38(Database-Issue): 787-791 (2010) - [c2]XiaoNa Wei, Yuzong Chen:
Computational model of VEGF, thrombin and histamine signalling network. BIBM Workshops 2010: 847-848
2000 – 2009
- 2009
- [j24]Hu Li, Choong Yong Ung, Xiao Hua Ma, Bao Wen Li, Boon Chuan Low, Zhi Wei Cao, Yu Zong Chen:
Simulation of crosstalk between small GTPase RhoA and EGFR-ERK signaling pathway via MEKK1. Bioinform. 25(3): 358-364 (2009) - [j23]Rong Wang, Jian-Sheng Wang, Gui-Rong Liu, Jongyoon Han, Yu Zong Chen:
Simulation of DNA electrophoresis in systems of large number of solvent particles by coarse-grained hybrid molecular dynamics approach. J. Comput. Chem. 30(4): 505-513 (2009) - [j22]Xue-Gang Yang, Duan Chen, Min Wang, Ying Xue, Yu Zong Chen:
Prediction of antibacterial compounds by machine learning approaches. J. Comput. Chem. 30(8): 1202-1211 (2009) - [j21]X. H. Liu, Xiao Hua Ma, C. Y. Tan, Y. Y. Jiang, M. L. Go, Boon Chuan Low, Yu Zong Chen:
Virtual Screening of Abl Inhibitors from Large Compound Libraries by Support Vector Machines. J. Chem. Inf. Model. 49(9): 2101-2110 (2009) - [j20]Pankaj Kumar, Bu-Cong Han, Z. Shi, Jia Jia, Yupeng Wang, Y. T. Zhang, L. Liang, Q. F. Liu, Zhi Liang Ji, Yu Zong Chen:
Update of KDBI: Kinetic Data of Bio-molecular Interaction database. Nucleic Acids Res. 37(Database-Issue): 636-641 (2009) - 2008
- [j19]Xiao Hua Ma, R. Wang, S. Y. Yang, Z. R. Li, Ying Xue, Y. C. Wei, Boon Chuan Low, Yu Zong Chen:
Evaluation of Virtual Screening Performance of Support Vector Machines Trained by Sparsely Distributed Active Compounds. J. Chem. Inf. Model. 48(6): 1227-1237 (2008) - 2007
- [j18]Jing-Xian Zhang, Wei-Juan Huang, Jing-Hua Zeng, Wen-Hui Huang, Yi Wang, Rui Zhao, Bu-Cong Han, Qing-Feng Liu, Yu Zong Chen, Zhi Liang Ji:
DITOP: drug-induced toxicity related protein database. Bioinform. 23(13): 1710-1712 (2007) - [j17]Serene A. K. Ong, Honghuang Lin, Yu Zong Chen, Ze-Rong Li, Zhi Wei Cao:
Efficacy of different protein descriptors in predicting protein functional families. BMC Bioinform. 8 (2007) - [j16]C. J. Zheng, L. Y. Han, B. Xie, C. Y. Liew, Serene A. K. Ong, J. Cui, H. L. Zhang, Z. Q. Tang, S. H. Gan, L. Jiang, Yu Zong Chen:
PharmGED: Pharmacogenetic Effect Database. Nucleic Acids Res. 35(Database-Issue): 794-799 (2007) - 2006
- [j15]H. H. Lin, L. Y. Han, H. L. Zhang, C. J. Zheng, B. Xie, Zhi Wei Cao, Yu Zong Chen:
Prediction of the functional class of metal-binding proteins from sequence derived physicochemical properties by support vector machine approach. BMC Bioinform. 7(S-5) (2006) - [j14]L. Y. Han, Honghuang Lin, Ze-Rong Li, C. J. Zheng, Zhi Wei Cao, B. Xie, Yu Zong Chen:
PEARLS: Program for Energetic Analysis of Receptor-Ligand System. J. Chem. Inf. Model. 46(1): 445-450 (2006) - [j13]Ze-Rong Li, Honghuang Lin, L. Y. Han, L. Jiang, X. Chen, Yu Zong Chen:
PROFEAT: a web server for computing structural and physicochemical features of proteins and peptides from amino acid sequence. Nucleic Acids Res. 34(Web-Server-Issue): 32-37 (2006) - [c1]C. Z. Cai, Q. F. Yuan, H. G. Xiao, X. H. Liu, L. Y. Han, Yu Zong Chen:
Prediction of Transmembrane Proteins from Their Primary Sequence by Support Vector Machine Approach. ICIC (3) 2006: 525-533 - 2005
- [j12]J. F. Wang, Z. R. Li, C. Z. Cai, Yu Zong Chen:
Assessment of approximate string matching in a biomedical text retrieval problem. Comput. Biol. Medicine 35(8): 717-724 (2005) - [j11]Chun Wei Yap, Yu Zong Chen:
Prediction of Cytochrome P450 3A4, 2D6, and 2C9 Inhibitors and Substrates by Using Support Vector Machines. J. Chem. Inf. Model. 45(4): 982-992 (2005) - [j10]Hu Li, Chun Wei Yap, Choong Yong Ung, Ying Xue, Zhi Wei Cao, Yu Zong Chen:
Effect of Selection of Molecular Descriptors on the Prediction of Blood-Brain Barrier Penetrating and Nonpenetrating Agents by Statistical Learning Methods. J. Chem. Inf. Model. 45(5): 1376-1384 (2005) - 2004
- [j9]C. J. Zheng, H. Zhou, B. Xie, L. Y. Han, Chun Wei Yap, Yu Zong Chen:
TRMP: a database of therapeutically relevant multiple pathways. Bioinform. 20(14): 2236-2241 (2004) - [j8]Ying Xue, Chun Wei Yap, Li Zhi Sun, Zhi Wei Cao, J. F. Wang, Yu Zong Chen:
Prediction of P-Glycoprotein Substrates by a Support Vector Machine Approach. J. Chem. Inf. Model. 44(4): 1497-1505 (2004) - [j7]Ying Xue, Ze-Rong Li, Chun Wei Yap, Li Zhi Sun, Xin Chen, Yu Zong Chen:
Effect of Molecular Descriptor Feature Selection in Support Vector Machine Classification of Pharmacokinetic and Toxicological Properties of Chemical Agents. J. Chem. Inf. Model. 44(5): 1630-1638 (2004) - [j6]Zhi Wei Cao, Ying Xue, L. Y. Han, B. Xie, H. Zhou, C. J. Zheng, Honghuang Lin, Yu Zong Chen:
MoViES: molecular vibrations evaluation server for analysis of fluctuational dynamics of proteins and nucleic acids. Nucleic Acids Res. 32(Web-Server-Issue): 679-685 (2004) - 2003
- [j5]Zhi Liang Ji, X. Chen, C. J. Zheng, L. X. Yao, L. Y. Han, Wee Kiang Yeo, P. C. Chung, H. S. Puy, Y. T. Tay, A. Muhammad, Yu Zong Chen:
KDBI: Kinetic Data of Bio-molecular Interactions database. Nucleic Acids Res. 31(1): 255-257 (2003) - [j4]C. Z. Cai, L. Y. Han, Zhi Liang Ji, X. Chen, Yu Zong Chen:
SVM-Prot: web-based support vector machine software for functional classification of a protein from its primary sequence. Nucleic Acids Res. 31(13): 3692-3697 (2003) - 2002
- [j3]Li Zhi Sun, Zhi Liang Ji, Xin Chen, J. F. Wang, Yu Zong Chen:
ADME-AP: a database of ADME associated proteins. Bioinform. 18(12): 1699-1700 (2002) - [j2]X. Chen, Zhi Liang Ji, D. G. Zhi, Yu Zong Chen:
CLiBE: A Database of Computed Ligand Binding Energy for Ligand-receptor Complexes. Comput. Chem. 26(6): 661-666 (2002) - [j1]X. Chen, Zhi Liang Ji, Yu Zong Chen:
TTD: Therapeutic Target Database. Nucleic Acids Res. 30(1): 412-415 (2002)
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