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Marco Vanoni
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2020 – today
- 2023
- [c5]Bruno G. Galuzzi
, Stefano Izzo
, Fabio Giampaolo
, Salvatore Cuomo
, Marco Vanoni
, Lilia Alberghina
, Chiara Damiani
, Francesco Piccialli
:
Coupling constrained-based flux sampling and clustering to tackle cancer metabolic heterogeneity. PDP 2023: 185-192 - 2022
- [j14]Bruno G. Galuzzi, Marco Vanoni, Chiara Damiani
:
Combining denoising of RNA-seq data and flux balance analysis for cluster analysis of single cells. BMC Bioinform. 23-S(6): 445 (2022) - [j13]Marzia Di Filippo
, Dario Pescini
, Bruno Giovanni Galuzzi
, Marcella Bonanomi
, Daniela Gaglio, Eleonora Mangano
, Clarissa Consolandi
, Lilia Alberghina, Marco Vanoni, Chiara Damiani
:
INTEGRATE: Model-based multi-omics data integration to characterize multi-level metabolic regulation. PLoS Comput. Biol. 18(2) (2022) - [c4]Massimiliano D'Angelo, Pasquale Palumbo, Stefano Busti, Marco Vanoni:
A coarse-grain model for cellular growth accounting for ribosome synthesis. CDC 2022: 3859-3864 - 2021
- [j12]Rosy Tsopra
, Xosé M. Fernández
, Claudio Luchinat, Lilia Alberghina, Hans Lehrach, Marco Vanoni, Felix Dreher, Osman Ugur Sezerman
, Marc Cuggia, Marie de Tayrac, Edvins Miklasevics, Lucian Mihai Itu, Marius Geanta, Lesley Ogilvie, Florence Godey, Cristian Nicolae Boldisor, Boris Campillo-Gimenez, Cosmina Cioroboiu, Costin Florian Ciusdel, Simona Coman, Oliver Hijano Cubelos, Alina Itu, Bodo Lange, Matthieu Le Gallo, Alexandra Lespagnol, Giancarlo Mauri
, H. Okan Soykam, Bastien Rance, Paola Turano, Leonardo Tenori, Alessia Vignoli
, Christoph Wierling
, Nora Benhabiles, Anita Burgun:
A framework for validating AI in precision medicine: considerations from the European ITFoC consortium. BMC Medical Informatics Decis. Mak. 21(1): 274 (2021) - 2020
- [j11]Davide Maspero
, Chiara Damiani, Marco Antoniotti, Alex Graudenzi
, Marzia Di Filippo, Marco Vanoni, Giulio Caravagna
, Riccardo Colombo, Daniele Ramazzotti
, Dario Pescini
:
The Influence of Nutrients Diffusion on a Metabolism-driven Model of a Multi-cellular System. Fundam. Informaticae 171(1-4): 279-295 (2020)
2010 – 2019
- 2019
- [j10]Chiara Damiani
, Davide Maspero
, Marzia Di Filippo
, Riccardo Colombo
, Dario Pescini
, Alex Graudenzi
, Hans V. Westerhoff
, Lilia Alberghina
, Marco Vanoni, Giancarlo Mauri
:
Integration of single-cell RNA-seq data into population models to characterize cancer metabolism. PLoS Comput. Biol. 15(2) (2019) - [c3]Davide Maspero, Marzia Di Filippo, Fabrizio Angaroni, Dario Pescini
, Giancarlo Mauri
, Marco Vanoni, Alex Graudenzi
, Chiara Damiani:
Integration of Single-Cell RNA-Sequencing Data into Flux Balance Cellular Automata. CIBB 2019: 207-215 - 2018
- [j9]Costanzo Manes
, Pasquale Palumbo, Valerio Cusimano
, Marco Vanoni, Lilia Alberghina:
Modeling Biological Timing and Synchronization Mechanisms by Means of Interconnections of Stochastic Switches. IEEE Control. Syst. Lett. 2(1): 19-24 (2018) - [i1]Pasquale Palumbo, Marco Vanoni, Federico Papa, Stefano Busti, Lilia Alberghina:
Whole yeast model: what and why. PeerJ Prepr. 6: e27327 (2018) - 2017
- [j8]Chiara Damiani, Riccardo Colombo, Daniela Gaglio, Fabrizia Mastroianni, Dario Pescini
, Hans V. Westerhoff
, Giancarlo Mauri
, Marco Vanoni, Lilia Alberghina
:
A metabolic core model elucidates how enhanced utilization of glucose and glutamine, with enhanced glutamine-dependent lactate production, promotes cancer cell growth: The WarburQ effect. PLoS Comput. Biol. 13(9) (2017) - [c2]Pasquale Palumbo, Marco Vanoni, Federico Papa
, Stefano Busti, Meike T. Wortel
, Bas Teusink
, Lilia Alberghina:
An Integrated Model Quantitatively Describing Metabolism, Growth and Cell Cycle in Budding Yeast. WIVACE 2017: 165-180 - 2016
- [j7]Marzia Di Filippo, Riccardo Colombo
, Chiara Damiani
, Dario Pescini
, Daniela Gaglio, Marco Vanoni, Lilia Alberghina
, Giancarlo Mauri
:
Zooming-in on cancer metabolic rewiring with tissue specific constraint-based models. Comput. Biol. Chem. 62: 60-69 (2016) - 2014
- [j6]Chiara Damiani
, Dario Pescini
, Riccardo Colombo
, Sara Molinari
, Lilia Alberghina
, Marco Vanoni, Giancarlo Mauri
:
An ensemble evolutionary constraint-based approach to understand the emergence of metabolic phenotypes. Nat. Comput. 13(3): 321-331 (2014) - 2013
- [c1]Chiara Damiani, Riccardo Colombo, Sara Molinari
, Dario Pescini, Daniela Gaglio, Marco Vanoni, Lilia Alberghina, Giancarlo Mauri
:
An ensemble approach to the study of the emergence of metabolic and proliferative disorders via Flux Balance Analysis. WIVACE 2013: 92-97 - 2011
- [j5]Elena Papaleo
, Valeria Ranzani, Farida Tripodi
, Alessandro Vitriolo
, Claudia Cirulli, Piercarlo Fantucci, Lilia Alberghina
, Marco Vanoni, Luca De Gioia, Paola Coccetti
:
An Acidic Loop and Cognate Phosphorylation Sites Define a Molecular Switch That Modulates Ubiquitin Charging Activity in Cdc34-Like Enzymes. PLoS Comput. Biol. 7(5) (2011) - 2010
- [j4]Stefano Busti, Paola Coccetti
, Lilia Alberghina
, Marco Vanoni:
Glucose Signaling-Mediated Coordination of Cell Growth and Cell Cycle in Saccharomyces Cerevisiae. Sensors 10(6): 6195-6240 (2010)
2000 – 2009
- 2009
- [j3]Chiara Balestrieri, Lilia Alberghina, Marco Vanoni, Ferdinando Chiaradonna:
Data recovery and integration from public databases uncovers transformation-specific transcriptional downregulation of cAMP-PKA pathway-encoding genes. BMC Bioinform. 10(S-12): 1 (2009) - [j2]Roberta Alfieri, Matteo Barberis
, Ferdinando Chiaradonna, Daniela Gaglio, Luciano Milanesi, Marco Vanoni, Edda Klipp, Lilia Alberghina:
Towards a systems biology approach to mammalian cell cycle: modeling the entrance into S phase of quiescent fibroblasts after serum stimulation. BMC Bioinform. 10(S-12): 16 (2009) - 2007
- [j1]Matteo Barberis
, Edda Klipp, Marco Vanoni, Lilia Alberghina
:
Cell Size at S Phase Initiation: An Emergent Property of the G1/S Network. PLoS Comput. Biol. 3(4) (2007)
Coauthor Index
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