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ORCID16. RECOMB 2012: Barcelona, Spain
- Benny Chor:
Research in Computational Molecular Biology - 16th Annual International Conference, RECOMB 2012, Barcelona, Spain, April 21-24, 2012. Proceedings. Lecture Notes in Computer Science 7262, Springer 2012, ISBN 978-3-642-29626-0 - Babak Alipanahi
, Nathan Krislock, Ali Ghodsi, Henry Wolkowicz, Logan Donaldson, Ming Li:
Protein Structure by Semidefinite Facial Reduction. 1-11 - Sivan Bercovici, Jesse M. Rodriguez, Megan Elmore, Serafim Batzoglou:
Ancestry Inference in Complex Admixtures via Variable-Length Markov Chain Linkage Models. 12-28 - Stefan Canzar, Mohammed El-Kebir, René Pool, Khaled M. Elbassioni, Alpeshkumar K. Malde, Alan E. Mark, Daan P. Geerke, Leen Stougie, Gunnar W. Klau:
Charge Group Partitioning in Biomolecular Simulation. 29-43 - Héctor Corrada Bravo:
Increased Methylation Variation in Epigenetic Domains across Cancer Types. 44 - Dan F. DeBlasio, Travis J. Wheeler, John D. Kececioglu:
Estimating the Accuracy of Multiple Alignments and its Use in Parameter Advising. 45-59 - Matthew R. Francis, Elana J. Fertig:
Quantifying the Dynamics of Coupled Networks of Switches and Oscillators. 60-61 - Melissa Gymrek, David Golan, Saharon Rosset, Yaniv Erlich:
lobSTR: A Short Tandem Repeat Profiler for Personal Genomes. 62-63 - Dan He, Buhm Han, Eleazar Eskin:
Hap-seq: An Optimal Algorithm for Haplotype Phasing with Imputation Using Sequencing Data. 64-78 - Lu He, Fabio Vandin, Gopal Pandurangan, Chris Bailey-Kellogg:
Ballast: A Ball-Based Algorithm for Structural Motifs. 79-93 - Patrick Holloway, Krister M. Swenson, David H. Ardell, Nadia El-Mabrouk:
Evolution of Genome Organization by Duplication and Loss: An Alignment Approach. 94-112 - Daniel Holtby, Shuai Cheng Li, Ming Li:
LoopWeaver - Loop Modeling by the Weighted Scaling of Verified Proteins. 113-126 - Yan Huang, Yin Hu, Corbin D. Jones, James N. MacLeod, Derek Y. Chiang, Yufeng Liu, Jan F. Prins, Jinze Liu:
A Robust Method for Transcript Quantification with RNA-seq Data. 127-147 - Marcus Kinsella, Vineet Bafna:
Modeling the Breakage-Fusion-Bridge Mechanism: Combinatorics and Cancer Genomics. 148-162 - Yang Li, Hong-Mei Li, Paul Burns, Mark Borodovsky, Gene E. Robinson, Jian Ma:
TrueSight: Self-training Algorithm for Splice Junction Detection Using RNA-seq. 163-164 - Yaw-Ling Lin, Charles B. Ward, Steven Skiena:
Synthetic Sequence Design for Signal Location Search. 165-179 - Marc A. Martí-Renom:
The Three-Dimensional Architecture of a Bacterial Genome and Its Alteration by Genetic Perturbation. 180 - Andrew W. McPherson, Chunxiao Wu, Alexander Wyatt, Sohrab P. Shah, Colin C. Collins, Süleyman Cenk Sahinalp:
Discovery of Complex Genomic Rearrangements in Cancer Using High-Throughput Sequencing. 181-182 - T. M. Murali, Matthew D. Dyer, David Badger, Brett M. Tyler, Michael G. Katze:
Network-Based Prediction and Analysis of HIV Dependency Factors. 183 - Andrew S. Parker, Karl E. Griswold, Chris Bailey-Kellogg:
Structure-Guided Deimmunization of Therapeutic Proteins. 184-198 - Dmitri D. Pervouchine, Ekaterina Khrameeva, Marina Pichugina, Olexii Nikolaienko, Mikhail S. Gelfand, Petr Rubtsov, Andrey A. Mironov:
Evidence for Widespread Association of Mammalian Splicing and Conserved Long-Range RNA Structures. 199 - Son K. Pham, Dmitry Antipov, Alexander Sirotkin, Glenn Tesler, Pavel A. Pevzner, Max A. Alekseyev:
Pathset Graphs: A Novel Approach for Comprehensive Utilization of Paired Reads in Genome Assembly. 200-212 - Imran Rauf, Florian Rasche, François Nicolas, Sebastian Böcker:
Finding Maximum Colorful Subtrees in Practice. 213-223 - Sebastien Roch, Sagi Snir:
Recovering the Tree-Like Trend of Evolution Despite Extensive Lateral Genetic Transfer: A Probabilistic Analysis. 224-238 - Sayed Mohammad Ebrahim Sahraeian, Byung-Jun Yoon:
RESQUE: Network Reduction Using Semi-Markov Random Walk Scores for Efficient Querying of Biological Networks (Extended Abstract). 239-240 - Raheleh Salari, Chava Kimchi-Sarfaty, Michael M. Gottesman, Teresa M. Przytycka:
Detecting SNP-Induced Structural Changes in RNA: Application to Disease Studies. 241-243 - David Sankoff, Chunfang Zheng, Baoyong Wang:
A Model for Biased Fractionation after Whole Genome Duplication. 244 - Christina Schmiedl, Mathias Möhl, Steffen Heyne, Mika Amit, Gad M. Landau, Sebastian Will, Rolf Backofen:
Exact Pattern Matching for RNA Structure Ensembles. 245-260 - Roded Sharan, Richard M. Karp:
Reconstructing Boolean Models of Signaling. 261-271 - Kai Song, Jie Ren, Zhiyuan Zhai, Xuemei Liu, Minghua Deng, Fengzhu Sun:
Alignment-Free Sequence Comparison Based on Next Generation Sequencing Reads: Extended Abstract. 272-285 - Rory Stark:
Differential Oestrogen Receptor Binding is Associated with Clinical Outcome in Breast Cancer. 286 - Nurcan Tuncbag, Alfredo Braunstein, Andrea Pagnani, Shao-Shan Carol Huang, Jennifer T. Chayes, Christian Borgs, Riccardo Zecchina, Ernest Fraenkel:
Simultaneous Reconstruction of Multiple Signaling Pathways via the Prize-Collecting Steiner Forest Problem. 287-301 - Hua Wang, Heng Huang, Chris H. Q. Ding:
Function-Function Correlated Multi-Label Protein Function Prediction over Interaction Networks. 302-313 - Hua Wang, Heng Huang, Chris H. Q. Ding, Feiping Nie:
Predicting Protein-Protein Interactions from Multimodal Biological Data Sources via Nonnegative Matrix Tri-Factorization. 314-325 - Zhanyong Wang, Farhad Hormozdiari, Wen-Yun Yang, Eran Halperin, Eleazar Eskin:
CNVeM: Copy Number Variation Detection Using Uncertainty of Read Mapping. 326-340 - Sebastian Will, Michael Yu, Bonnie Berger:
Structure-Based Whole Genome Realignment Reveals Many Novel Non-coding RNAs. 341 - Osvaldo Zagordi, Armin Töpfer, Sandhya Prabhakaran, Volker Roth, Eran Halperin, Niko Beerenwinkel:
Probabilistic Inference of Viral Quasispecies Subject to Recombination. 342-354 - ZhiZhuo Zhang, Cheng Wei Chang, Hugo Willy, Edwin Cheung, Wing-Kin Sung:
Simultaneously Learning DNA Motif along with Its Position and Sequence Rank Preferences through EM Algorithm. 355-370
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