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2020 – today
- 2024
[j21]Zhenxing Guo, Daoyu Duan, Wen Tang
, Julia Zhu, William S. Bush, Liangliang Zhang, Xiaofeng Zhu, Fulai Jin, Hao Feng:
magpie: A power evaluation method for differential RNA methylation analysis in N6-methyladenosine sequencing. PLoS Comput. Biol. 20(2) (2024)- 2021
- [j20]Neel Patel, William S. Bush:
Modeling transcriptional regulation using gene regulatory networks based on multi-omics data sources. BMC Bioinform. 22(1): 200 (2021) - 2020
- [c17]Nicholas R. Wheeler, Penelope Benchek, Brian W. Kunkle, Kara L. Hamilton-Nelson, MikeWarfe, Jeremy R. Fondran, Jonathan L. Haines, William S. Bush:
Hadoop and PySpark for Reproducibility and Scalability of Genomic Sequencing Studies. PSB 2020: 523-534 - [c16]Dana C. Crawford, John Lin, Jessica Cooke Bailey, Tyler Kinzy, John R. Sedor, John F. O'Toole, William S. Bush:
Frequency of ClinVar Pathogenic Variants in Chronic Kidney Disease Patients Surveyed for Return ofResearch Results at a Cleveland Public Hospital. PSB 2020: 575-586 - [c15]William S. Bush, Nicholas Wheeler, Brett K. Beaulieu-Jones, Christian Darabos:
Packaging Biocomputing Software to Maximize Distribution and Reuse. PSB 2020: 739-742
2010 – 2019
- 2019
- [r1]William S. Bush:
Genome-Wide Association Studies. Encyclopedia of Bioinformatics and Computational Biology (2) 2019: 235-241 - 2018
- [j19]M. Arabnejad, Bryan A. Dawkins, William S. Bush, Bill C. White, A. R. Harkness, Brett A. McKinney:
Transition-transversion encoding and genetic relationship metric in ReliefF feature selection improves pathway enrichment in GWAS. BioData Min. 11(1): 23:1-23:17 (2018) - [j18]Mariusz Butkiewicz, Elizabeth E. Blue, Yuk Yee Leung, Xueqiu Jian, Edoardo Marcora, Alan E. Renton, Amanda Kuzma, Li-San Wang, Daniel C. Koboldt, Jonathan L. Haines, William S. Bush:
Functional annotation of genomic variants in studies of late-onset Alzheimer's disease. Bioinform. 34(16): 2724-2731 (2018) - [j17]R. Michael Sivley, Jonathan H. Sheehan, Jonathan A. Kropski, Joy D. Cogan, Timothy S. Blackwell, John A. Phillips, William S. Bush, Jens Meiler, John A. Capra:
Three-dimensional spatial analysis of missense variants in RTEL1 identifies pathogenic variants in patients with Familial Interstitial Pneumonia. BMC Bioinform. 19(1): 18:1-18:10 (2018) - [c14]Alexandra E. Fish, Dana C. Crawford, John A. Capra, William S. Bush:
Local ancestry transitions modify snp-trait associations. PSB 2018: 424-435 - [c13]William S. Bush, Dana C. Crawford, Farren Briggs, Darcy Freedman, Chantel Sloan:
Integrating community-level data resources for precision medicine research. PSB 2018: 618-622 - 2017
- [j16]Mariusz Butkiewicz, Jonathan L. Haines, William S. Bush:
Introducing COCOS: codon consequence scanner for annotating reading frame changes induced by stop-lost and frame shift variants. Bioinform. 33(10): 1561-1562 (2017) - [c12]Robert J. Goodloe, Eric Farber-Eger, Jonathan Boston, Dana C. Crawford, William S. Bush:
Reducing Clinical Noise for Body Mass Index Measures Due to Unit and Transcription Errors in the Electronic Health Record. CRI 2017 - 2015
- [j15]Logan Dumitrescu, Nicole A. Restrepo, Robert J. Goodloe, Jonathan Boston, Eric Farber-Eger, Sarah A. Pendergrass, William S. Bush, Dana C. Crawford:
Towards a phenome-wide catalog of human clinical traits impacted by genetic ancestry. BioData Min. 8: 35 (2015) - [j14]Jacob B. Hall, Jessica Cooke Bailey, Joshua Hoffman, Margaret A. Pericak-Vance, William K. Scott, Jaclyn Kovach, Stephen G. Schwartz, Anita Agarwal, Milam Brantley, Jonathan L. Haines, William S. Bush:
Estimating cumulative pathway effects on risk for age-related macular degeneration using mixed linear models. BMC Bioinform. 16: 329:1-329:9 (2015) - 2014
- [j13]Sabrina L. Mitchell, Jacob B. Hall, Robert J. Goodloe, Jonathan Boston, Eric Farber-Eger, Sarah A. Pendergrass, William S. Bush, Dana C. Crawford:
Investigating the relationship between mitochondrial genetic variation and cardiovascular-related traits to develop a framework for mitochondrial phenome-wide association studies. BioData Min. 7: 6 (2014) - [j12]Wei Xie, Murat Kantarcioglu, William S. Bush, Dana C. Crawford, Joshua C. Denny, Raymond Heatherly, Bradley A. Malin:
SecureMA: protecting participant privacy in genetic association meta-analysis. Bioinform. 30(23): 3334-3341 (2014) - [c11]William S. Bush, Jonathan L. Haines:
Genotype Correlation Analysis Reveals Pathway-Based Functional Disequilibrium and Potential Epistasis in the Human Interactome. EvoApplications 2014: 890-901 - [c10]Matthew Oetjens, William S. Bush, Kelly A. Birdwell, Holli H. Dilks, Erica A. Bowton, Joshua C. Denny, Russell A. Wilke, Dan M. Roden, Dana C. Crawford:
Utilization of an EMR-Biorepository to Identify the Genetic Predictors of Calcineurin-Inhibitor Toxicity in Heart Transplant Recipients. Pacific Symposium on Biocomputing 2014: 253-264 - 2013
- [j11]Laura K. Wiley, R. Michael Sivley, William S. Bush:
Rapid storage and retrieval of genomic intervals from a relational database system using nested containment lists. Database J. Biol. Databases Curation 2013 (2013) - [j10]Laura K. Wiley, Anushi Shah, Hua Xu, William S. Bush:
Research and applications: ICD-9 tobacco use codes are effective identifiers of smoking status. J. Am. Medical Informatics Assoc. 20(4): 652-658 (2013) - [c9]Laura K. Wiley, Josh F. Peterson, Joshua C. Denny, William S. Bush:
Establishing the Need for Personalized Medicine: Simvastatin Exposure Among a SLCO1B1 Variant Population. AMIA 2013 - [c8]R. Michael Sivley, Alexandra E. Fish, William S. Bush:
Knowledge-Constrained K-Medoids Clustering of Regulatory Rare Alleles for Burden Tests. EvoBIO 2013: 35-42 - [e2]Leonardo Vanneschi, William S. Bush, Mario Giacobini:
Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics - 11th European Conference, EvoBIO 2013, Vienna, Austria, April 3-5, 2013. Proceedings. Lecture Notes in Computer Science 7833, Springer 2013, ISBN 978-3-642-37188-2 [contents] - 2012
- [j9]Carrie C. Buchanan, Eric Torstenson, William S. Bush, Marylyn D. Ritchie:
A comparison of cataloged variation between International HapMap Consortium and 1000 Genomes Project data. J. Am. Medical Informatics Assoc. 19(2): 289-294 (2012) - [j8]William S. Bush, Jason H. Moore:
Chapter 11: Genome-Wide Association Studies. PLoS Comput. Biol. 8(12) (2012) - [c7]William S. Bush:
Introduction to bioinformatics and computational biology. GECCO (Companion) 2012: 1141-1170 - [e1]Mario Giacobini, Leonardo Vanneschi, William S. Bush:
Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics - 10th European Conference, EvoBIO 2012, Málaga, Spain, April 11-13, 2012. Proceedings. Lecture Notes in Computer Science 7246, Springer 2012, ISBN 978-3-642-29065-7 [contents] - 2011
- [c6]Stephen D. Turner, William S. Bush:
Multivariate Analysis of Regulatory Snps: Empowering Personal Genomics by Considering Cis-Epistasis and Heterogeneity. Pacific Symposium on Biocomputing 2011: 276-287 - 2010
- [j7]William S. Bush, Scott M. Dudek, Marylyn D. Ritchie:
Visualizing SNP statistics in the context of linkage disequilibrium using LD-Plus. Bioinform. 26(4): 578-579 (2010)
2000 – 2009
- 2009
- [b1]William S. Bush:
A Knowledge-Driven Multi-Locus Analysis of Multiple Sclerosis Susceptiblity. Vanderbilt University, Nashville, Tennessee, USA, 2009 - [j6]William S. Bush, Guanhua Chen, Eric Torstenson, Marylyn D. Ritchie:
LD-Spline: Mapping SNPs on genotyping platforms to genomic regions using patterns of linkage disequilibrium. BioData Min. 2: 7 (2009) - [c5]Stephen D. Turner, Marylyn D. Ritchie, William S. Bush:
Conquering the Needle-in-a-Haystack: How Correlated Input Variables Beneficially Alter the Fitness Landscape for Neural Networks. EvoBIO 2009: 80-91 - [c4]William S. Bush, Scott M. Dudek, Marylyn D. Ritchie:
Biofilter: A Knowledge-Integration System for the Multi-Locus Analysis of Genome-Wide Association Studies. Pacific Symposium on Biocomputing 2009: 368-379 - 2008
- [j5]William S. Bush, Todd L. Edwards, Scott M. Dudek, Brett A. McKinney, Marylyn D. Ritchie:
Alternative contingency table measures improve the power and detection of multifactor dimensionality reduction. BMC Bioinform. 9 (2008) - [c3]Todd L. Edwards, William S. Bush, Stephen D. Turner, Scott M. Dudek, Eric Torstenson, Mike Schmidt, Eden Martin, Marylyn D. Ritchie:
Generating Linkage Disequilibrium Patterns in Data Simulations Using genomeSIMLA. EvoBIO 2008: 24-35 - 2007
- [j4]Marylyn D. Ritchie, Alison A. Motsinger, William S. Bush, Christopher S. Coffey, Jason H. Moore:
Genetic programming neural networks: A powerful bioinformatics tool for human genetics. Appl. Soft Comput. 7(1): 471-479 (2007) - [j3]William S. Bush, Hava T. Siegelmann:
Circadian synchrony in networks of protein rhythm driven neurons. Complex. 12(6): 46 (2007) - [c2]William S. Bush, Tricia A. Thornton-Wells, Marylyn D. Ritchie:
Association Rule Discovery Has the Ability to Model Complex Genetic Effects. CIDM 2007: 624-629 - 2006
- [j2]William S. Bush, Scott M. Dudek, Marylyn D. Ritchie:
Parallel multifactor dimensionality reduction: a tool for the large-scale analysis of gene-gene interactions. Bioinform. 22(17): 2173-2174 (2006) - [j1]William S. Bush, Hava T. Siegelmann:
Circadian synchrony in networks of protein rhythm driven neurons. Complex. 12(1): 67-72 (2006) - 2005
- [c1]William S. Bush, Alison A. Motsinger, Scott M. Dudek, Marylyn D. Ritchie:
Can Neural Network Constraints in GP Provide Power to Detect Genes Associated with Human Disease?. EvoWorkshops 2005: 44-53
Coauthor Index
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