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ORCIDFabio Rinaldi 0001
Person information
- affiliation: IDSIA, Lugano, Switzerland
- affiliation (former): University of Zurich, Switzerland
Other persons with the same name
- Fabio Rinaldi 0002
![[0000-0003-0783-5425]](https://dblp.dagstuhl.de/img/orcid-mark.12x12.png "0000-0003-0783-5425")
— Polytechnic University of Milan, Italy - Fabio Rinaldi 0003 — University of Ferrara, Italy
- Fabio Rinaldi 0004 — Guglielmo Marconi University, Rome, Italy
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2020 – today
- 2024
[c72]Joseph Cornelius, Oscar Lithgow-Serrano, Sandra Mitrovic, Ljiljana Dolamic, Fabio Rinaldi:
BUST: Benchmark for the evaluation of detectors of LLM-Generated Text. NAACL-HLT 2024: 8029-8057- 2023
- [c71]Sanghwan Kim, Farhad Nooralahzadeh, Morteza Rohanian, Koji Fujimoto, Mizuho Nishio, Ryo Sakamoto, Fabio Rinaldi, Michael Krauthammer:
Boosting Radiology Report Generation by Infusing Comparison Prior. BioNLP@ACL 2023: 50-61 - [c70]Vani Kanjirangat, Tanja Samardzic, Ljiljana Dolamic, Fabio Rinaldi:
Optimizing the Size of Subword Vocabularies in Dialect Classification. VarDial@EACL 2023: 14-30 - [e8]Manuela Hürlimann, Roberto Mastropietro, Daniele Puccinelli, Fabio Rinaldi, Mark Cieliebak:
Proceedings of the Swiss Text Analytics Conference 2022, Lugano, Switzerland, June 8-10, 2022. CEUR Workshop Proceedings 3361, CEUR-WS.org 2023 [contents] - [i6]Sanghwan Kim, Farhad Nooralahzadeh, Morteza Rohanian, Koji Fujimoto, Mizuho Nishio, Ryo Sakamoto, Fabio Rinaldi, Michael Krauthammer:
Boosting Radiology Report Generation by Infusing Comparison Prior. CoRR abs/2305.04561 (2023) - 2022
- [j38]Roberto Zanoli, Alberto Lavelli, Theresa Löffler, Nicolas Andres Perez Gonzalez, Fabio Rinaldi:
An annotated dataset for extracting gene-melanoma relations from scientific literature. J. Biomed. Semant. 13(1): 2 (2022) - [j37]Raul Rodriguez-Esteban, Dina Vishnyakova, Fabio Rinaldi:
Revisiting the decay of scientific email addresses. J. Assoc. Inf. Sci. Technol. 73(1): 136-139 (2022) - [c69]Oscar Lithgow-Serrano, Joseph Cornelius, Fabio Rinaldi, Ljiljana Dolamic:
mattica@SMM4H'22: Leveraging sentiment for stance & premise joint learning. SMM4H@COLING 2022: 75-77 - [c68]Vani Kanjirangat, Tanja Samardzic, Fabio Rinaldi, Ljiljana Dolamic:
Early Guessing for Dialect Identification. EMNLP (Findings) 2022: 6417-6426 - [c67]Vani Kanjirangat, Tanja Samardzic, Ljiljana Dolamic, Fabio Rinaldi:
NLP DI at NADI Shared Task Subtask-1: Sub-word Level Convolutional Neural Models and Pre-trained Binary Classifiers for Dialect Identification. WANLP@EMNLP 2022: 468-473 - [e7]Alberto Lavelli, Eben Holderness, Antonio Jimeno-Yepes, Anne-Lyse Minard, James Pustejovsky, Fabio Rinaldi:
Proceedings of the 13th International Workshop on Health Text Mining and Information Analysis, LOUHI@EMNLP 2022, Abu Dhabi, United Arab Emirates (Hybrid), December 7, 2022. Association for Computational Linguistics 2022, ISBN 978-1-959429-13-5 [contents] - 2021
- [j36]Ivano Lauriola, Fabio Aiolli, Alberto Lavelli, Fabio Rinaldi:
Learning adaptive representations for entity recognition in the biomedical domain. J. Biomed. Semant. 12(1): 10 (2021) - [j35]Lenz Furrer, Joseph Cornelius, Fabio Rinaldi:
Parallel sequence tagging for concept recognition. BMC Bioinform. 22-S(1): 623 (2021) - [j34]Ensieh Davoodijam, Nasser Ghadiri, Maryam Lotfi Shahreza, Fabio Rinaldi:
MultiGBS: A multi-layer graph approach to biomedical summarization. J. Biomed. Informatics 116: 103706 (2021) - [j33]Vani Kanjirangat, Fabio Rinaldi:
Enhancing Biomedical Relation Extraction with Transformer Models using Shortest Dependency Path Features and Triplet Information. J. Biomed. Informatics 122: 103893 (2021) - [c66]Anastassia Shaitarova, Fabio Rinaldi:
Negation typology and general representation models for cross-lingual zero-shot negation scope resolution in Russian, French, and Spanish. NAACL-HLT (Student Research Workshop) 2021: 15-23 - [c65]Joseph Cornelius, Tilia Ellendorff, Fabio Rinaldi:
Approaching SMM4H with auto-regressive language models and back-translation. SMM4H@NAACL-HLT 2021: 146-148 - [e6]Eben Holderness, Antonio Jimeno-Yepes, Alberto Lavelli, Anne-Lyse Minard, James Pustejovsky, Fabio Rinaldi:
Proceedings of the 12th International Workshop on Health Text Mining and Information Analysis, LOUHI@EACL, Online, April 19, 2021. Association for Computational Linguistics 2021, ISBN 978-1-954085-16-9 [contents] - 2020
- [c64]Nico Colic, Lenz Furrer, Fabio Rinaldi:
Annotating the Pandemic: Named Entity Recognition and Normalisation in COVID-19 Literature. NLP4COVID@EMNLP 2020 - [c63]Ivano Lauriola, Stefano Campese, Alberto Lavelli, Fabio Rinaldi, Fabio Aiolli:
Exploring the feature space of character-level embeddings. ESANN 2020: 637-642 - [c62]Nicola Colic, Patrick Beeler, Chantal Csajka, Vasiliki Foufi, Frederic Gaspar, Marie-Annick Le Pogam, Angela Lisibach, Christian Lovis, Monika Lutters, Fabio Rinaldi:
Automated Detection of Adverse Drug Events from Older Patients' Electronic Medical Records Using Text Mining. ICPR Workshops (1) 2020: 203-211 - [c61]Vani Kanjirangat, Sandra Mitrovic, Alessandro Antonucci, Fabio Rinaldi:
SST-BERT at SemEval-2020 Task 1: Semantic Shift Tracing by Clustering in BERT-based Embedding Spaces. SemEval@COLING 2020: 214-221 - [c60]Joseph Cornelius, Tilia Ellendorff, Lenz Furrer, Fabio Rinaldi:
COVID-19 Twitter Monitor: Aggregating and Visualizing COVID-19 Related Trends in Social Media. SMM4H@COLING 2020: 1-10 - [c59]Anastassia Shaitarova, Lenz Furrer, Lena Hettinger, Fabio Rinaldi:
Cross-lingual Transfer-learning Approach to Negation Scope Resolution. SwissText/KONVENS 2020 - [e5]Eben Holderness, Antonio Jimeno-Yepes, Alberto Lavelli, Anne-Lyse Minard, James Pustejovsky, Fabio Rinaldi:
Proceedings of the 11th International Workshop on Health Text Mining and Information Analysis, LOUHI@EMNLP 2020, Online, November 20, 2020. Association for Computational Linguistics 2020, ISBN 978-1-952148-81-1 [contents] - [i5]Lenz Furrer, Joseph Cornelius, Fabio Rinaldi:
Parallel sequence tagging for concept recognition. CoRR abs/2003.07424 (2020) - [i4]Fabio Rinaldi, Daniele Dolci:
RBF Solver for Quaternions Interpolation. CoRR abs/2006.04686 (2020) - [i3]Ensieh Davoodijam, Nasser Ghadiri, Maryam Lotfi Shahreza, Fabio Rinaldi:
MultiGBS: A multi-layer graph approach to biomedical summarization. CoRR abs/2008.11908 (2020) - [i2]Vani Kanjirangat, Sandra Mitrovic, Alessandro Antonucci, Fabio Rinaldi:
SST-BERT at SemEval-2020 Task 1: Semantic Shift Tracing by Clustering in BERT-based Embedding Spaces. CoRR abs/2010.00857 (2020)
2010 – 2019
- 2019
- [j32]Dina Vishnyakova, Raul Rodriguez-Esteban, Fabio Rinaldi:
A new approach and gold standard toward author disambiguation in MEDLINE. J. Am. Medical Informatics Assoc. 26(10): 1037-1045 (2019) - [j31]Lenz Furrer, Anna Jancso, Nicola Colic, Fabio Rinaldi:
OGER++: hybrid multi-type entity recognition. J. Cheminformatics 11(1): 7:1-7:10 (2019) - [c58]Lenz Furrer, Joseph Cornelius, Fabio Rinaldi:
UZH@CRAFT-ST: a Sequence-labeling Approach to Concept Recognition. BioNLP-OST@EMNLP-IJNCLP 2019: 185-195 - [c57]Tilia Ellendorff, Lenz Furrer, Nicola Colic, Noëmi Aepli, Fabio Rinaldi:
Approaching SMM4H with Merged Models and Multi-task Learning. SMM4H@ACL 2019: 58-61 - [e4]Eben Holderness, Antonio Jimeno-Yepes, Alberto Lavelli, Anne-Lyse Minard, James Pustejovsky, Fabio Rinaldi:
Proceedings of the Tenth International Workshop on Health Text Mining and Information Analysis LOUHI@EMNLP 2019, Hong Kong, November 3, 2019. Association for Computational Linguistics 2019, ISBN 978-1-950737-77-2 [contents] - [i1]Seyedmostafa Sheikhalishahi, Riccardo Miotto, Joel T. Dudley, Alberto Lavelli, Fabio Rinaldi, Venet Osmani:
Natural Language Processing of Clinical Notes on Chronic Diseases: Systematic Review. CoRR abs/1908.05780 (2019) - 2018
- [c56]Ivano Lauriola, Riccardo Sella, Fabio Aiolli, Alberto Lavelli, Fabio Rinaldi:
Learning Representations for Biomedical NER. NL4AI@AI*IA 2018: 83-94 - [c55]Ivano Lauriola, Mirko Polato, Alberto Lavelli, Fabio Rinaldi, Fabio Aiolli:
Learning Preferences for Large Scale Multi-label Problems. ICANN (1) 2018: 546-555 - [c54]Tilia Ellendorff, Joseph Cornelius, Heath Gordon, Nicola Colic, Fabio Rinaldi:
UZH@SMM4H: System Descriptions. SMM4H@EMNLP 2018: 56-60 - [e3]Alberto Lavelli, Anne-Lyse Minard, Fabio Rinaldi:
Proceedings of the Ninth International Workshop on Health Text Mining and Information Analysis, Louhi@EMNLP 2018, Brussels, Belgium, October 31, 2018. Association for Computational Linguistics 2018, ISBN 978-1-948087-74-2 [contents] - 2017
- [j30]Fabio Rinaldi, Oscar Lithgow-Serrano, Socorro Gama-Castro, Hilda Solano-Lira, Alejandra López-Fuentes, Luis Muñiz-Rascado, Cecilia Ishida-Gutiérrez, Carlos-Francisco Méndez-Cruz, Julio Collado-Vides:
Strategies towards digital and semi-automated curation in RegulonDB. Database J. Biol. Databases Curation 2017: bax012 (2017) - [j29]Fabio Rinaldi, Oscar Lithgow-Serrano, Socorro Gama-Castro, Hilda Solano-Lira, Alejandra López-Fuentes, Luis Muñiz-Rascado, Cecilia Ishida-Gutiérrez, Carlos-Francisco Méndez-Cruz, Julio Collado-Vides:
Erratum: Strategies towards digital and semi-automated curation in RegulonDB. Database J. Biol. Databases Curation 2017: bax012 (2017) - [j28]Yalbi Itzel Balderas-Martínez, Fabio Rinaldi, Gabriela Contreras, Hilda Solano-Lira, Mishael Sánchez-Pérez, Julio Collado-Vides, Moisés Selman, Annie Pardo:
Improving biocuration of microRNAs in diseases: a case study in idiopathic pulmonary fibrosis. Database J. Biol. Databases Curation 2017: bax030 (2017) - [j27]Marco Basaldella, Lenz Furrer, Carlo Tasso, Fabio Rinaldi:
Entity recognition in the biomedical domain using a hybrid approach. J. Biomed. Semant. 8(1): 51:1-51:14 (2017) - 2016
- [j26]Fabio Rinaldi, Tilia Renate Ellendorff, Sumit Madan, Simon Clematide, Adrian Van der Lek, Heinz-Theodor Mevissen, Juliane Fluck:
BioCreative V track 4: a shared task for the extraction of causal network information using the Biological Expression Language. Database J. Biol. Databases Curation 2016 (2016) - [j25]Qinghua Wang, Shabbir Syed-Abdul, Lara Almeida, Sophia Ananiadou, Yalbi I. Balderas-Martínez, Riza Batista-Navarro, David Campos, Lucy Chilton, Hui-Jou Chou, Gabriela Contreras, Laurel Cooper, Hong-Jie Dai, Barbra Ferrell, Juliane Fluck, Socorro Gama-Castro, Nancy George, Georgios V. Gkoutos, Afroza Khanam Irin, Lars Juhl Jensen, Silvia Jimenez, Toni Rose Jue, Ingrid M. Keseler, Sumit Madan, Sérgio Matos, Peter McQuilton, Marija Milacic, Matthew E. Mort, Jeyakumar Natarajan, Evangelos Pafilis, Emiliano Pereira, Shruti Rao, Fabio Rinaldi, Karen Rothfels, David Salgado, Raquel M. Silva, Onkar Singh, Raymund Stefancsik, Chu-Hsien Su, Suresh Subramani, Hamsa D. Tadepally, Loukia Tsaprouni, Nicole A. Vasilevsky, Xiaodong Wang, Andrew Chatr-aryamontri, Stanley J. F. Laulederkind, Sherri Matis-Mitchell, Johanna R. McEntyre, Sandra E. Orchard, Sangya Pundir, Raul Rodriguez-Esteban, Kimberly Van Auken, Zhiyong Lu, Mary L. Schaeffer, Cathy H. Wu, Lynette Hirschman, Cecilia N. Arighi:
Overview of the interactive task in BioCreative V. Database J. Biol. Databases Curation 2016 (2016) - [j24]Socorro Gama-Castro, Heladia Salgado, Alberto Santos-Zavaleta, Daniela Ledezma-Tejeida, Luis Muñiz-Rascado, Jair Santiago García-Sotelo, Kevin Alquicira-Hernández, Irma Martínez-Flores, Lucia Pannier, Jaime Abraham Castro-Mondragón, Alejandra Medina-Rivera, Hilda Solano-Lira, César Bonavides-Martínez, Ernesto Pérez-Rueda, Shirley Alquicira-Hernández, Liliana Porrón-Sotelo, Alejandra López-Fuentes, Anastasia Hernández-Koutoucheva, Victor del Moral-Chávez, Fabio Rinaldi, Julio Collado-Vides:
RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond. Nucleic Acids Res. 44(Database-Issue): 133-143 (2016) - [c53]Dina Vishnyakova, Raul Rodriguez-Esteban, Khan Ozol, Fabio Rinaldi:
Author Name Disambiguation in MEDLINE Based on Journal Descriptors and Semantic Types. BioTxtM@COLING 2016 2016: 134-142 - [c52]Tilia Ellendorff, Simon Foster, Fabio Rinaldi:
The PsyMine Corpus - A Corpus annotated with Psychiatric Disorders and their Etiological Factors. LREC 2016 - [c51]Marco Basaldella, Lenz Furrer, Nico Colic, Tilia Ellendorff, Carlo Tasso, Fabio Rinaldi:
Using a Hybrid Approach for Entity Recognition in the Biomedical Domain. SMBM 2016: 11-19 - [e2]Mariana L. Neves, Fabio Rinaldi, Goran Nenadic, Dietrich Rebholz-Schuhmann:
Proceedings of the 7th International Symposium on Semantic Mining in Biomedicine, SMBM 2016, Potsdam, Germany, August 4-5, 2016. CEUR Workshop Proceedings 1650, CEUR-WS.org 2016 [contents] - 2015
- [j23]Fabio Rinaldi, Oscar Lithgow-Serrano, Alejandra López-Fuentes, Socorro Gama-Castro, Yalbi I. Balderas-Martínez, Hilda Solano-Lira, Julio Collado-Vides:
An Approach towards Semi-automated Biomedical Literature Curation and Enrichment for a Major Biological Database. Polibits 52: 25-31 (2015) - [c50]Fabio Rinaldi, Lenz Furrer, Simon Clematide:
Large-scale Information Extraction for Assisted Curation of the Biomedical Literature. IT@LIA@AI*IA 2015 - [c49]Tilia Renate Ellendorff, Adrian Van der Lek, Lenz Furrer, Fabio Rinaldi:
A Combined Resource of Biomedical Terminology and its Statistics. TIA 2015: 39-49 - [c48]Lenz Furrer, Susanne Küker, John Berezowski, Horst Posthaus, Flavie Vial, Fabio Rinaldi:
Constructing a Syndromic Terminology Resource for Veterinary Text Mining. TIA 2015: 61-70 - 2014
- [j22]Donald C. Comeau, Riza Theresa Batista-Navarro, Hong-Jie Dai, Rezarta Islamaj Dogan, Antonio Jimeno-Yepes, Ritu Khare, Zhiyong Lu, Hernani Marques, Carolyn J. Mattingly, Mariana L. Neves, Yifan Peng, Rafal Rak, Fabio Rinaldi, Richard Tzong-Han Tsai, Karin Verspoor, Thomas C. Wiegers, Cathy H. Wu, W. John Wilbur:
BioC interoperability track overview. Database J. Biol. Databases Curation 2014 (2014) - [j21]Socorro Gama-Castro, Fabio Rinaldi, Alejandra López-Fuentes, Yalbi Itzel Balderas-Martínez, Simon Clematide, Tilia Renate Ellendorff, Alberto Santos-Zavaleta, Hernani Marques-Madeira, Julio Collado-Vides:
Assisted curation of regulatory interactions and growth conditions of OxyR in E. coli K-12. Database J. Biol. Databases Curation 2014 (2014) - [j20]Wanli Liu, Rezarta Islamaj Dogan, Dongseop Kwon, Hernani Marques, Fabio Rinaldi, W. John Wilbur, Donald C. Comeau:
BioC implementations in Go, Perl, Python and Ruby. Database J. Biol. Databases Curation 2014 (2014) - [j19]Fabio Rinaldi, Simon Clematide, Hernani Marques, Tilia Ellendorff, Martin Romacker, Raul Rodriguez-Esteban:
OntoGene web services for biomedical text mining. BMC Bioinform. 15(S-14): S6 (2014) - [c47]Fabio Rinaldi:
Text Mining Technologies for Database Curation. KDIR 2014: 544-548 - [c46]Tilia Ellendorff, Fabio Rinaldi, Simon Clematide:
Using Large Biomedical Databases as Gold Annotations for Automatic Relation Extraction. LREC 2014: 3736-3741 - [c45]Fabio Rinaldi:
Semi-Automated Semantic Annotation of the Biomedical Literature. ISWC (Posters & Demos) 2014: 473-476 - 2013
- [j18]Donald C. Comeau, Rezarta Islamaj Dogan, Paolo Ciccarese, Kevin Bretonnel Cohen, Martin Krallinger, Florian Leitner, Zhiyong Lu, Yifan Peng, Fabio Rinaldi, Manabu Torii, Alfonso Valencia, Karin Verspoor, Thomas C. Wiegers, Cathy H. Wu, W. John Wilbur:
BioC: a minimalist approach to interoperability for biomedical text processing. Database J. Biol. Databases Curation 2013 (2013) - [j17]Fabio Rinaldi, Simon Clematide, Simon Hafner, Gerold Schneider, Gintare Grigonyte, Martin Romacker, Thérèse Vachon:
Using the OntoGene pipeline for the triage task of BioCreative 2012. Database J. Biol. Databases Curation 2013 (2013) - [c44]Gerold Schneider, Simon Clematide, Tilia Ellendorff, Don Tuggener, Fabio Rinaldi, Gintare Grigonyte:
UZH in BioNLP 2013. BioNLP@ACL (Shared Task) 2013: 116-120 - [c43]Simon Clematide, Martin Davtyan, Fabio Rinaldi, Dietrich Rebholz-Schuhmann:
Exploiting BabelNet for Multilingual Biomedical Synonym Expansion. CLEF (Working Notes) 2013 - [c42]Dietrich Rebholz-Schuhmann, Simon Clematide, Fabio Rinaldi, Senay Kafkas, Erik M. van Mulligen, Quoc-Chinh Bui, Johannes Hellrich, Ian Lewin, David Milward, Michael Poprat, Antonio Jimeno-Yepes, Udo Hahn, Jan A. Kors:
Entity Recognition in Parallel Multi-lingual Biomedical Corpora: The CLEF-ER Laboratory Overview. CLEF 2013: 353-367 - [c41]Dietrich Rebholz-Schuhmann, Simon Clematide, Fabio Rinaldi, Senay Kafkas, Erik M. van Mulligen, Quoc-Chinh Bui, Johannes Hellrich, Ian Lewin, David Milward, Michael Poprat, Antonio Jimeno-Yepes, Udo Hahn, Jan A. Kors:
Multilingual Semantic Resources and Parallel Corpora in the Biomedical Domain: the CLEF-ER Challenge. CLEF (Working Notes) 2013 - [c40]Fabio Rinaldi:
Assisted editing in the biomedical domain: motivation and challenges. ACM Symposium on Document Engineering 2013: 197-200 - 2012
- [j16]Fabio Rinaldi, Simon Clematide, Yael Garten, Michelle Whirl Carrillo, Li Gong, Joan M. Hebert, Katrin Sangkuhl, Caroline F. Thorn, Teri E. Klein, Russ B. Altman:
Using ODIN for a PharmGKB revalidation experiment. Database J. Biol. Databases Curation 2012 (2012) - [j15]Simon Clematide, Fabio Rinaldi:
Ranking relations between diseases, drugs and genes for a curation task. J. Biomed. Semant. 3(S-3): S5 (2012) - [j14]Fabio Rinaldi, Gerold Schneider, Simon Clematide:
Relation mining experiments in the pharmacogenomics domain. J. Biomed. Informatics 45(5): 851-861 (2012) - [c39]Gintare Grigonyte, Fabio Rinaldi, Martin Volk:
Term Evolution: Use of Biomedical Terminologies. AAAI Fall Symposium: Information Retrieval and Knowledge Discovery in Biomedical Text 2012 - [c38]Fabio Rinaldi, Simon Clematide, Gerold Schneider, Gintare Grigonyte:
Notes about the OntoGene Pipeline. AAAI Fall Symposium: Information Retrieval and Knowledge Discovery in Biomedical Text 2012 - [c37]Gintare Grigonyte, Fabio Rinaldi, Martin Volk:
Change of Biomedical Domain Terminology Over Time. Baltic HLT 2012: 74-81 - [c36]Gerold Schneider, Fabio Rinaldi, Simon Clematide:
Dependency parsing for interaction detection in pharmacogenomics. LREC 2012: 2075-2082 - [c35]Fabio Rinaldi:
Using biomedical databases as knowledge sources for large-scale text mining. E-LKR 2012 - 2011
- [j13]Fabio Rinaldi, Kaarel Kaljurand, Rune Sætre:
Terminological resources for text mining over biomedical scientific literature. Artif. Intell. Medicine 52(2): 107-114 (2011) - [j12]Dietrich Rebholz-Schuhmann, Fabio Rinaldi, Sampo Pyysalo, Nigel Collier, Udo Hahn:
Towards mature use of semantic resources for biomedical analyses. J. Biomed. Semant. 2(S-5): I1 (2011) - [j11]Dietrich Rebholz-Schuhmann, Antonio Jimeno-Yepes, Chen Li, Senay Kafkas, Ian Lewin, Ning Kang, Peter T. Corbett, David Milward, Ekaterina Buyko, Elena Beisswanger, Kerstin Hornbostel, Alexandre Kouznetsov, René Witte, Jonas B. Laurila, Christopher J. O. Baker, Cheng-Ju Kuo, Simon Clematide, Fabio Rinaldi, Richárd Farkas, György Móra, Kazuo Hara, Laura Inés Furlong, Michael Rautschka, Mariana L. Neves, Alberto D. Pascual-Montano, Qi Wei, Nigel Collier, Md. Faisal Mahbub Chowdhury, Alberto Lavelli, Rafael Berlanga Llavori, Roser Morante, Vincent Van Asch, Walter Daelemans, José Luís Marina, Erik M. van Mulligen, Jan A. Kors, Udo Hahn:
Assessment of NER solutions against the first and second CALBC Silver Standard Corpus. J. Biomed. Semant. 2(S-5): S11 (2011) - [j10]Gerold Schneider, Simon Clematide, Fabio Rinaldi:
Detection of interaction articles and experimental methods in biomedical literature. BMC Bioinform. 12(S-8): S13 (2011) - [j9]Zhiyong Lu, Hung-Yu Kao, Chih-Hsuan Wei, Minlie Huang, Jingchen Liu, Cheng-Ju Kuo, Chun-Nan Hsu, Richard Tzong-Han Tsai, Hong-Jie Dai, Naoaki Okazaki, Han-Cheol Cho, Martin Gerner, Illés Solt, Shashank Agarwal, Feifan Liu, Dina Vishnyakova, Patrick Ruch, Martin Romacker, Fabio Rinaldi, Sanmitra Bhattacharya, Padmini Srinivasan, Hongfang Liu, Manabu Torii, Sérgio Matos, David Campos, Karin Verspoor, Kevin M. Livingston, W. John Wilbur:
The gene normalization task in BioCreative III. BMC Bioinform. 12(S-8): S2 (2011) - [j8]Martin Krallinger, Miguel Vazquez, Florian Leitner, David Salgado, Andrew Chatr-aryamontri, Andrew G. Winter, Livia Perfetto, Leonardo Briganti, Luana Licata, Marta Iannuccelli, Luisa Castagnoli, Gianni Cesareni, Mike Tyers, Gerold Schneider, Fabio Rinaldi, Robert Leaman, Graciela Gonzalez, Sérgio Matos, Sun Kim, W. John Wilbur, Luis M. Rocha, Hagit Shatkay, Ashish V. Tendulkar, Shashank Agarwal, Feifan Liu, Xinglong Wang, Rafal Rak, Keith Noto, Charles Elkan, Zhiyong Lu:
The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text. BMC Bioinform. 12(S-8): S3 (2011) - [j7]Cecilia N. Arighi, Phoebe M. Roberts, Shashank Agarwal, Sanmitra Bhattacharya, Gianni Cesareni, Andrew Chatr-aryamontri, Simon Clematide, Pascale Gaudet, Michelle G. Giglio, Ian Harrow, Eva Huala, Martin Krallinger, Ulf Leser, Donghui Li, Feifan Liu, Zhiyong Lu, Lois J. Maltais, Naoaki Okazaki, Livia Perfetto, Fabio Rinaldi, Rune Sætre, David Salgado, Padmini Srinivasan, Philippe E. Thomas, Luca Toldo, Lynette Hirschman, Cathy H. Wu:
BioCreative III interactive task: an overview. BMC Bioinform. 12(S-8): S4 (2011) - [c34]Don Tuggener, Manfred Klenner, Gerold Schneider, Simon Clematide, Fabio Rinaldi:
An Incremental Model for the Coreference Resolution Task of BioNLP 2011. BioNLP@ACL (Shared Task) 2011: 151-152 - [c33]Simon Clematide, Fabio Rinaldi:
Ranking Interactions for a Curation Task. ICMLA (2) 2011: 100-105 - [e1]Nigel Collier, Udo Hahn, Dietrich Rebholz-Schuhmann, Fabio Rinaldi, Sampo Pyysalo:
Proceedings of the Fourth International Symposium for Semantic Mining in Biomedicine, Cambridge, United Kingdom, October, 2010. CEUR Workshop Proceedings 714, CEUR-WS.org 2011 [contents] - 2010
- [j6]Fabio Rinaldi, Gerold Schneider, Kaarel Kaljurand, Simon Clematide, Thérèse Vachon, Martin Romacker:
OntoGene in BioCreative II.5. IEEE ACM Trans. Comput. Biol. Bioinform. 7(3): 472-480 (2010) - [c32]Dietrich Rebholz-Schuhmann, Antonio Jimeno-Yepes, Chen Li, Senay Kafkas, Ian Lewin, Ning Kang, Peter T. Corbett, David Milward, Ekaterina Buyko, Elena Beisswanger, Kerstin Hornbostel, Alexandre Kouznetsov, René Witte, Jonas B. Laurila, Christopher J. O. Baker, Cheng-Ju Kuo, Simon Clematide, Fabio Rinaldi, Richárd Farkas, György Móra, Kazuo Hara, Laura Inés Furlong, Michael Rautschka, Mariana L. Neves, Alberto D. Pascual-Montano, Qi Wei, Nigel Collier, Md. Faisal Mahbub Chowdhury, Alberto Lavelli, Rafael Berlanga Llavori, Roser Morante, Vincent Van Asch, Walter Daelemans, José Luís Marina, Erik M. van Mulligen, Jan A. Kors, Udo Hahn:
Assessment of NER solutions against the first and second CALBC silver standard corpus. Semantic Mining in Biomedicine 2010
2000 – 2009
- 2009
- [c31]Kaarel Kaljurand, Fabio Rinaldi, Thomas Kappeler, Gerold Schneider:
Using Existing Biomedical Resources to Detect and Ground Terms in Biomedical Literature. AIME 2009: 225-234 - [c30]Kaarel Kaljurand, Gerold Schneider, Fabio Rinaldi:
UZurich in the BioNLP 2009 Shared Task. BioNLP@HLT-NAACL (Shared Task) 2009: 28-36 - [c29]Thomas Kappeler, Kaarel Kaljurand, Fabio Rinaldi:
TX Task: Automatic Detection of Focus Organisms in Biomedical Publications. BioNLP@HLT-NAACL 2009: 80-88 - [c28]Gerold Schneider, Kaarel Kaljurand, Fabio Rinaldi:
Detecting Protein-Protein Interactions in Biomedical Texts Using a Parser and Linguistic Resources. CICLing 2009: 406-417 - [c27]Fabio Rinaldi, Dietrich Rebholz-Schuhmann:
Support tools for literature-based information access in molecular biology. IUCS 2009: 273-277 - 2008
- [c26]Fabio Rinaldi, Gerold Schneider, Kaarel Kaljurand, Michael Hess:
Dependency-Based Relation Mining for Biomedical Literature. LREC 2008 - 2007
- [j5]Fabio Rinaldi, Gerold Schneider, Kaarel Kaljurand, Michael Hess, Christos Andronis, Ourania Konstanti, Andreas Persidis:
Mining of relations between proteins over biomedical scientific literature using a deep-linguistic approach. Artif. Intell. Medicine 39(2): 127-136 (2007) - [c25]Gerold Schneider, Kaarel Kaljurand, Fabio Rinaldi, Tobias Kuhn:
Pro3Gres Parser in the CoNLL Domain Adaptation Shared Task. EMNLP-CoNLL 2007: 1161-1165 - 2006
- [j4]Fabio Rinaldi, Gerold Schneider, Kaarel Kaljurand, Michael Hess, Martin Romacker:
An environment for relation mining over richly annotated corpora: the case of GENIA. BMC Bioinform. 7(S-3) (2006) - [c24]Fabio Rinaldi, Gerold Schneider, Kaarel Kaljurand, Michael Hess:
Tools for Text Mining over Biomedical Literature. ECAI 2006: 825-826 - [c23]Fabio Rinaldi, Gerold Schneider, Kaarel Kaljurand, Michael Hess, Martin Romacker:
An Environment for Relation Mining over Richly Annotated Corpora: the case of GENIA. SMBM 2006 - 2005
- [j3]Eric SanJuan, James Dowdall, Fidelia Ibekwe-Sanjuan, Fabio Rinaldi:
A symbolic approach to automatic multiword term structuring. Comput. Speech Lang. 19(4): 524-542 (2005) - [c22]Fabio Rinaldi, Gerold Schneider, Kaarel Kaljurand, Michael Hess, Christos Andronis, Andreas Persidis, Ourania Konstanti:
Relation Mining over a Corpus of Scientific Literature. AIME 2005: 535-544 - [c21]Gerold Schneider, Fabio Rinaldi, Kaarel Kaljurand, Michael Hess:
Closing the Gap: Cognitively Adequate, Fast Broad-Coverage Grammatical Role Parsing. NLUCS 2005: 178-184 - [c20]Norbert E. Fuchs, Stefan Höfler, Kaarel Kaljurand, Fabio Rinaldi, Gerold Schneider:
Attempto Controlled English: A Knowledge Representation Language Readable by Humans and Machines. Reasoning Web 2005: 213-250 - 2004
- [c19]Fabio Rinaldi, Elia Yuste:
Exploiting Technical Terminology for Knowledge Management. LSTKM@EKAW 2004 - [c18]James Dowdall, Will Lowe, Jeremy Ellman, Fabio Rinaldi, Michael Hess:
The Role of MultiWord Terminology in Knowledge Management. LREC 2004 - [c17]Kaarel Kaljurand, Fabio Rinaldi, James Dowdall, Michael Hess:
Exploiting Language Resources for Semantic Web Annotations. LREC 2004 - [c16]