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ORCIDGunnar Rätsch
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- affiliation: ETH Zurich, Switzerland
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2020 – today
- 2022
[c79]Gideon Dresdner, Maria-Luiza Vladarean, Gunnar Rätsch, Francesco Locatello, Volkan Cevher, Alp Yurtsever:
Faster One-Sample Stochastic Conditional Gradient Method for Composite Convex Minimization. AISTATS 2022: 8439-8457- [c78]Mikhail Karasikov, Harun Mustafa, Gunnar Rätsch, André Kahles:
Lossless Indexing with Counting de Bruijn Graphs. RECOMB 2022: 374-376 - [i38]Alexander Immer, Tycho F. A. van der Ouderaa, Vincent Fortuin, Gunnar Rätsch, Mark van der Wilk:
Invariance Learning in Deep Neural Networks with Differentiable Laplace Approximations. CoRR abs/2202.10638 (2022) - [i37]Gideon Dresdner, Maria-Luiza Vladarean, Gunnar Rätsch, Francesco Locatello, Volkan Cevher, Alp Yurtsever:
Faster One-Sample Stochastic Conditional Gradient Method for Composite Convex Minimization. CoRR abs/2202.13212 (2022) - 2021
- [j54]Vincent Fortuin
, Gideon Dresdner, Heiko Strathmann, Gunnar Rätsch:
Sparse Gaussian Processes on Discrete Domains. IEEE Access 9: 76750-76758 (2021) - [j53]Daniel Danciu, Mikhail Karasikov, Harun Mustafa, André Kahles, Gunnar Rätsch:
Topology-based sparsification of graph annotations. Bioinform. 37(Supplement): 169-176 (2021) - [j52]Linda K. Sundermann, Jeff Wintersinger, Gunnar Rätsch, Jens Stoye, Quaid Morris:
Reconstructing tumor evolutionary histories and clone trees in polynomial-time with SubMARine. PLoS Comput. Biol. 17(1) (2021) - [c77]Metod Jazbec, Matthew Ashman, Vincent Fortuin, Michael Pearce, Stephan Mandt, Gunnar Rätsch:
Scalable Gaussian Process Variational Autoencoders. AISTATS 2021: 3511-3519 - [c76]Laura Manduchi, Matthias Hüser, Martin Faltys, Julia E. Vogt, Gunnar Rätsch, Vincent Fortuin:
T-DPSOM: an interpretable clustering method for unsupervised learning of patient health states. CHIL 2021: 236-245 - [c75]Alexander Immer, Matthias Bauer, Vincent Fortuin, Gunnar Rätsch, Mohammad Emtiyaz Khan:
Scalable Marginal Likelihood Estimation for Model Selection in Deep Learning. ICML 2021: 4563-4573 - [c74]Hugo Yèche, Gideon Dresdner, Francesco Locatello, Matthias Hüser, Gunnar Rätsch:
Neighborhood Contrastive Learning Applied to Online Patient Monitoring. ICML 2021: 11964-11974 - [c73]Gideon Dresdner, Saurav Shekhar, Fabian Pedregosa, Francesco Locatello, Gunnar Rätsch:
Boosting Variational Inference With Locally Adaptive Step-Sizes. IJCAI 2021: 2337-2343 - [c72]Hugo Yèche, Rita Kuznetsova, Marc Zimmermann, Matthias Hüser, Xinrui Lyu, Martin Faltys, Gunnar Rätsch:
HiRID-ICU-Benchmark - A Comprehensive Machine Learning Benchmark on High-resolution ICU Data. NeurIPS Datasets and Benchmarks 2021 - [i36]Simon Bing, Vincent Fortuin, Gunnar Rätsch:
On Disentanglement in Gaussian Process Variational Autoencoders. CoRR abs/2102.05507 (2021) - [i35]Vincent Fortuin, Adrià Garriga-Alonso, Florian Wenzel, Gunnar Rätsch, Richard E. Turner, Mark van der Wilk, Laurence Aitchison:
Bayesian Neural Network Priors Revisited. CoRR abs/2102.06571 (2021) - [i34]Alexander Immer, Matthias Bauer, Vincent Fortuin, Gunnar Rätsch, Mohammad Emtiyaz Khan:
Scalable Marginal Likelihood Estimation for Model Selection in Deep Learning. CoRR abs/2104.04975 (2021) - [i33]Matthias Hüser, Martin Faltys, Xinrui Lyu, Chris Barber, Stephanie L. Hyland, Tobias M. Merz, Gunnar Rätsch:
Early prediction of respiratory failure in the intensive care unit. CoRR abs/2105.05728 (2021) - [i32]Gideon Dresdner, Saurav Shekhar, Fabian Pedregosa, Francesco Locatello, Gunnar Rätsch:
Boosting Variational Inference With Locally Adaptive Step-Sizes. CoRR abs/2105.09240 (2021) - [i31]Hugo Yèche, Gideon Dresdner, Francesco Locatello, Matthias Hüser, Gunnar Rätsch:
Neighborhood Contrastive Learning Applied to Online Patient Monitoring. CoRR abs/2106.05142 (2021) - [i30]Hugo Yèche, Rita Kuznetsova, Marc Zimmermann, Matthias Hüser, Xinrui Lyu, Martin Faltys, Gunnar Rätsch:
HiRID-ICU-Benchmark - A Comprehensive Machine Learning Benchmark on High-resolution ICU Data. CoRR abs/2111.08536 (2021) - 2020
- [j51]Xinrui Lyu, Jean Garret, Gunnar Rätsch, Kjong-Van Lehmann:
Mutational signature learning with supervised negative binomial non-negative matrix factorization. Bioinform. 36(Supplement-1): i154-i160 (2020) - [j50]Mikhail Karasikov, Harun Mustafa, Amir Joudaki, Sara Javadzadeh-No, Gunnar Rätsch, André Kahles:
Sparse Binary Relation Representations for Genome Graph Annotation. J. Comput. Biol. 27(4): 626-639 (2020) - [j49]Francesco Locatello, Stefan Bauer, Mario Lucic, Gunnar Rätsch, Sylvain Gelly, Bernhard Schölkopf, Olivier Bachem:
A Sober Look at the Unsupervised Learning of Disentangled Representations and their Evaluation. J. Mach. Learn. Res. 21: 209:1-209:62 (2020) - [j48]Claudia Calabrese, Natalie R. Davidson, Deniz Demircioglu, Nuno A. Fonseca, Yao He, André Kahles, Kjong-Van Lehmann, Fenglin Liu, Yuichi Shiraishi, Cameron M. Soulette, Lara Urban, Liliana Greger, Siliang Li, Dongbing Liu, Marc D. Perry, Qian Xiang, Fan Zhang, Junjun Zhang, Peter Bailey, Serap Erkek, Katherine A. Hoadley, Yong Hou, Matthew R. Huska, Helena Kilpinen, Jan O. Korbel, Maximillian G. Marin, Julia Markowski, Tannistha Nandi, Qiang Pan-Hammarström, Chandra Sekhar Pedamallu, Reiner Siebert, Stefan G. Stark, Hong Su, Patrick Tan, Sebastian M. Waszak, Christina K. Yung, Shida Zhu, Philip Awadalla, Matthew Meyerson, B. F. Francis Ouellette, Kui Wu, Huanming Yang, Samirkumar B. Amin, Aurélien Chateigner, Isidro Cortés-Ciriano, Brian Craft, Milana Frenkel-Morgenstern, Mary Goldman, Ekta Khurana, Fabien C. Lamaze, Chang Li, Xiaobo Li, Xinyue Li, Xingmin Liu, Morten Muhlig Nielsen, Akinyemi I. Ojesina, Peter J. Park, Jakob Skou Pedersen, Bin Tean Teh, Jian Wang, Heng Xiong, Sergei Yakneen, Chen Ye, Xiuqing Zhang, Liangtao Zheng, Jingchun Zhu, Chad Creighton, Jonathan Göke, Roland F. Schwarz, Oliver Stegle, Zemin Zhang, Alvis Brazma, Gunnar Rätsch, Angela N. Brooks:
Genomic basis for RNA alterations in cancer. Nat. 578(7793): 129-136 (2020) - [c71]Francesco Locatello, Stefan Bauer, Mario Lucic, Gunnar Rätsch, Sylvain Gelly, Bernhard Schölkopf, Olivier Bachem:
A Commentary on the Unsupervised Learning of Disentangled Representations. AAAI 2020: 13681-13684 - [c70]Vincent Fortuin, Dmitry Baranchuk, Gunnar Rätsch, Stephan Mandt:
GP-VAE: Deep Probabilistic Time Series Imputation. AISTATS 2020: 1651-1661 - [c69]Francesco Locatello, Michael Tschannen, Stefan Bauer, Gunnar Rätsch, Bernhard Schölkopf, Olivier Bachem:
Disentangling Factors of Variations Using Few Labels. ICLR 2020 - [c68]Francesco Locatello, Ben Poole, Gunnar Rätsch, Bernhard Schölkopf, Olivier Bachem, Michael Tschannen:
Weakly-Supervised Disentanglement Without Compromises. ICML 2020: 6348-6359 - [c67]Maciej Besta, Raghavendra Kanakagiri, Harun Mustafa, Mikhail Karasikov, Gunnar Rätsch, Torsten Hoefler, Edgar Solomonik:
Communication-Efficient Jaccard similarity for High-Performance Distributed Genome Comparisons. IPDPS 2020: 1122-1132 - [c66]Adrian Egli, Manuel Battegay, Andrea C. Büchler, Peter Bühlmann, Thierry Calandra, Philippe Eckert, Hansjakob Furrer, Gilbert Greub, Stephan M. Jakob, Laurent Kaiser, Stephen L. Leib, Stephan Marsch, Nicolai Meinshausen, Jean-Luc Pagani, Jerome Pugin, Gunnar Rätsch, Jacques Schrenzel, Reto Schüpbach, Martin Siegemund, Nicola Zamboni, Reinhard Zbinden, Annelies Zinkernagel, Karsten M. Borgwardt:
SPHN/PHRT: Forming a Swiss-Wide Infrastructure for Data-Driven Sepsis Research. MIE 2020: 1163-1167 - [c65]Pesho Ivanov, Benjamin Bichsel, Harun Mustafa, André Kahles, Gunnar Rätsch, Martin T. Vechev:
AStarix: Fast and Optimal Sequence-to-Graph Alignment. RECOMB 2020: 104-119 - [i29]Francesco Locatello, Ben Poole, Gunnar Rätsch, Bernhard Schölkopf, Olivier Bachem, Michael Tschannen:
Weakly-Supervised Disentanglement Without Compromises. CoRR abs/2002.02886 (2020) - [i28]Francesco Locatello, Stefan Bauer, Mario Lucic, Gunnar Rätsch, Sylvain Gelly, Bernhard Schölkopf, Olivier Bachem:
A Commentary on the Unsupervised Learning of Disentangled Representations. CoRR abs/2007.14184 (2020) - [i27]Metod Jazbec, Vincent Fortuin, Michael Pearce, Stephan Mandt, Gunnar Rätsch:
Scalable Gaussian Process Variational Autoencoders. CoRR abs/2010.13472 (2020) - [i26]Francesco Locatello, Stefan Bauer, Mario Lucic, Gunnar Rätsch, Sylvain Gelly, Bernhard Schölkopf, Olivier Bachem:
A Sober Look at the Unsupervised Learning of Disentangled Representations and their Evaluation. CoRR abs/2010.14766 (2020) - [i25]Jonathan Heitz, Joanna Ficek, Martin Faltys, Tobias M. Merz, Gunnar Rätsch, Matthias Hüser:
WRSE - a non-parametric weighted-resolution ensemble for predicting individual survival distributions in the ICU. CoRR abs/2011.00865 (2020)
2010 – 2019
- 2019
- [j47]Harun Mustafa, Ingo Schilken, Mikhail Karasikov, Carsten Eickhoff, Gunnar Rätsch, André Kahles:
Dynamic compression schemes for graph coloring. Bioinform. 35(3): 407-414 (2019) - [c64]Vincent Fortuin, Matthias Hüser, Francesco Locatello, Heiko Strathmann, Gunnar Rätsch:
SOM-VAE: Interpretable Discrete Representation Learning on Time Series. ICLR (Poster) 2019 - [c63]Francesco Locatello, Stefan Bauer, Mario Lucic, Gunnar Rätsch, Sylvain Gelly, Bernhard Schölkopf, Olivier Bachem:
Challenging Common Assumptions in the Unsupervised Learning of Disentangled Representations. RML@ICLR 2019 - [c62]Francesco Locatello, Stefan Bauer, Mario Lucic, Gunnar Rätsch, Sylvain Gelly, Bernhard Schölkopf, Olivier Bachem:
Challenging Common Assumptions in the Unsupervised Learning of Disentangled Representations. ICML 2019: 4114-4124 - [c61]Mikhail Karasikov, Harun Mustafa, Amir Joudaki, Sara Javadzadeh-No, Gunnar Rätsch, André Kahles:
Sparse Binary Relation Representations for Genome Graph Annotation. RECOMB 2019: 120-135 - [i24]Vincent Fortuin, Gunnar Rätsch:
Deep Mean Functions for Meta-Learning in Gaussian Processes. CoRR abs/1901.08098 (2019) - [i23]Stephanie L. Hyland, Martin Faltys, Matthias Hüser, Xinrui Lyu, Thomas Gumbsch, Cristóbal Esteban, Christian Bock, Max Horn, Michael Moor, Bastian Rieck, Marc Zimmermann, Dean A. Bodenham, Karsten M. Borgwardt, Gunnar Rätsch, Tobias M. Merz:
Machine learning for early prediction of circulatory failure in the intensive care unit. CoRR abs/1904.07990 (2019) - [i22]Stefan G. Stark, Stephanie L. Hyland, Melanie Fernandes Pradier, Kjong Lehmann, Andreas Wicki, Fernando Pérez-Cruz, Julia E. Vogt, Gunnar Rätsch:
Unsupervised Extraction of Phenotypes from Cancer Clinical Notes for Association Studies. CoRR abs/1904.12973 (2019) - [i21]Francesco Locatello, Michael Tschannen, Stefan Bauer, Gunnar Rätsch, Bernhard Schölkopf, Olivier Bachem:
Disentangling Factors of Variation Using Few Labels. CoRR abs/1905.01258 (2019) - [i20]Vincent Fortuin, Gunnar Rätsch, Stephan Mandt:
Multivariate Time Series Imputation with Variational Autoencoders. CoRR abs/1907.04155 (2019) - [i19]Andreas Georgiou, Vincent Fortuin, Harun Mustafa, Gunnar Rätsch:
Deep Multiple Instance Learning for Taxonomic Classification of Metagenomic read sets. CoRR abs/1909.13146 (2019) - [i18]Laura Manduchi, Matthias Hüser, Gunnar Rätsch, Vincent Fortuin:
Variational PSOM: Deep Probabilistic Clustering with Self-Organizing Maps. CoRR abs/1910.01590 (2019) - [i17]Maciej Besta, Raghavendra Kanakagiri, Harun Mustafa, Mikhail Karasikov, Gunnar Rätsch, Torsten Hoefler, Edgar Solomonik:
Communication-Efficient Jaccard Similarity for High-Performance Distributed Genome Comparisons. CoRR abs/1911.04200 (2019) - 2018
- [c60]Francesco Locatello, Rajiv Khanna, Joydeep Ghosh, Gunnar Rätsch:
Boosting Variational Inference: an Optimization Perspective. AISTATS 2018: 464-472 - [c59]Stephanie L. Hyland, Martin Faltys, Matthias Hüser, Xinrui Lyu, Cristóbal Esteban, Gunnar Rätsch, Tobias Merz:
A Machine Learning-based Early Warning System for Circulatory System Deterioration in Intensive Care Unit Patients. AMIA 2018 - [c58]Francesco Locatello, Damien Vincent, Ilya O. Tolstikhin, Gunnar Rätsch, Sylvain Gelly, Bernhard Schölkopf:
Clustering Meets Implicit Generative Models. ICLR (Workshop) 2018 - [c57]Francesco Locatello, Anant Raj, Sai Praneeth Karimireddy, Gunnar Rätsch, Bernhard Schölkopf, Sebastian U. Stich, Martin Jaggi:
On Matching Pursuit and Coordinate Descent. ICML 2018: 3204-3213 - [c56]Stephanie L. Hyland, Matthias Hüser, Xinrui Lyu, Martin Faltys, Tobias Merz, Gunnar Rätsch:
Predicting circulatory system deterioration in intensive care unit patients. AIH@IJCAI 2018: 87-92 - [c55]Francesco Locatello, Gideon Dresdner, Rajiv Khanna, Isabel Valera, Gunnar Rätsch:
Boosting Black Box Variational Inference. NeurIPS 2018: 3405-3415 - [i16]Francesco Locatello, Anant Raj, Sai Praneeth Karimireddy, Gunnar Rätsch, Bernhard Schölkopf, Sebastian U. Stich, Martin Jaggi:
Revisiting First-Order Convex Optimization Over Linear Spaces. CoRR abs/1803.09539 (2018) - [i15]Francesco Locatello, Damien Vincent, Ilya O. Tolstikhin, Gunnar Rätsch, Sylvain Gelly, Bernhard Schölkopf:
Clustering Meets Implicit Generative Models. CoRR abs/1804.11130 (2018) - [i14]Francesco Locatello, Gideon Dresdner, Rajiv Khanna, Isabel Valera, Gunnar Rätsch:
Boosting Black Box Variational Inference. CoRR abs/1806.02185 (2018) - [i13]Vincent Fortuin, Matthias Hüser, Francesco Locatello, Heiko Strathmann, Gunnar Rätsch:
Deep Self-Organization: Interpretable Discrete Representation Learning on Time Series. CoRR abs/1806.02199 (2018) - [i12]Vincent Fortuin, Gideon Dresdner, Heiko Strathmann, Gunnar Rätsch:
Scalable Gaussian Processes on Discrete Domains. CoRR abs/1810.10368 (2018) - [i11]Xinrui Lyu, Matthias Hüser, Stephanie L. Hyland, George Zerveas, Gunnar Rätsch:
Improving Clinical Predictions through Unsupervised Time Series Representation Learning. CoRR abs/1812.00490 (2018) - 2017
- [j46]Yi Zhong, Theofanis Karaletsos, Philipp Drewe, Vipin T. Sreedharan, David Kuo, Kamini Singh, Hans-Guido Wendel, Gunnar Rätsch:
RiboDiff: detecting changes of mRNA translation efficiency from ribosome footprints. Bioinform. 33(1): 139-141 (2017) - [c54]Stephanie L. Hyland, Gunnar Rätsch:
Learning Unitary Operators with Help From u(n). AAAI 2017: 2050-2058 - [c53]Francesco Locatello, Michael Tschannen, Gunnar Rätsch, Martin Jaggi:
Greedy Algorithms for Cone Constrained Optimization with Convergence Guarantees. NIPS 2017: 773-784 - [i10]Francesco Locatello, Michael Tschannen, Gunnar Rätsch, Martin Jaggi:
Greedy Algorithms for Cone Constrained Optimization with Convergence Guarantees. CoRR abs/1705.11041 (2017) - [i9]Cristóbal Esteban, Stephanie L. Hyland, Gunnar Rätsch:
Real-valued (Medical) Time Series Generation with Recurrent Conditional GANs. CoRR abs/1706.02633 (2017) - [i8]Francesco Locatello, Rajiv Khanna, Joydeep Ghosh, Gunnar Rätsch:
Boosting Variational Inference: an Optimization Perspective. CoRR abs/1708.01733 (2017) - 2016
- [j45]André Kahles, Jonas Behr, Gunnar Rätsch:
MMR: a tool for read multi-mapper resolution. Bioinform. 32(5): 770-772 (2016) - [j44]Kana Shimizu, Koji Nuida, Gunnar Rätsch:
Efficient privacy-preserving string search and an application in genomics. Bioinform. 32(11): 1652-1661 (2016) - [j43]André Kahles, Cheng Soon Ong, Yi Zhong, Gunnar Rätsch:
SplAdder: identification, quantification and testing of alternative splicing events from RNA-Seq data. Bioinform. 32(12): 1840-1847 (2016) - [c52]Stephanie L. Hyland, Theofanis Karaletsos, Gunnar Rätsch:
A Generative Model of Words and Relationships from Multiple Sources. AAAI 2016: 2622-2629 - [c51]Theofanis Karaletsos, Serge J. Belongie, Gunnar Rätsch:
When crowds hold privileges: Bayesian unsupervised representation learning with oracle constraints. ICLR (Poster) 2016 - [i7]Stephanie L. Hyland, Theofanis Karaletsos, Gunnar Rätsch:
Knowledge Transfer with Medical Language Embeddings. CoRR abs/1602.03551 (2016) - [i6]Stephanie L. Hyland, Gunnar Rätsch:
Learning Unitary Operators with Help From u(n). CoRR abs/1607.04903 (2016) - 2015
- [j42]Yi Zhong, Philipp Drewe, Andrew L. Wolfe, Kamini Singh, Hans-Guido Wendel, Gunnar Rätsch:
Protein translational control and its contribution to oncogenesis revealed by computational methods. BMC Bioinform. 16(S-2): A6 (2015) - [j41]Julia E. Vogt, Marius Kloft, Stefan Stark, Sudhir Raman, Sandhya Prabhakaran, Volker Roth, Gunnar Rätsch:
Probabilistic clustering of time-evolving distance data. Mach. Learn. 100(2-3): 635-654 (2015) - [c50]Marina M.-C. Vidovic, Nico Görnitz, Klaus-Robert Müller, Gunnar Rätsch, Marius Kloft:
Opening the Black Box: Revealing Interpretable Sequence Motifs in Kernel-Based Learning Algorithms. ECML/PKDD (2) 2015: 137-153 - [c49]Søren Brunak, Francisco M. de la Vega, Adam A. Margolin, Benjamin J. Raphael, Gunnar Rätsch, Joshua M. Stuart:
Session Introduction. Pacific Symposium on Biocomputing 2015: 8-9 - [c48]Kjong-Van Lehmann, André Kahles, Cyriac Kandoth, William Lee, Nikolaus Schultz, Oliver Stegle, Gunnar Rätsch:
Integrative Genome-wide Analysis of the Determinants of RNA Splicing in Kidney Renal Clear Cell Carcinoma. Pacific Symposium on Biocomputing 2015: 44-55 - [i5]Julia E. Vogt, Marius Kloft, Stefan Stark, Sudhir Raman, Sandhya Prabhakaran, Volker Roth, Gunnar Rätsch:
Probabilistic Clustering of Time-Evolving Distance Data. CoRR abs/1504.03701 (2015) - [i4]Christian Widmer, Marius Kloft, Vipin T. Sreedharan, Gunnar Rätsch:
Framework for Multi-task Multiple Kernel Learning and Applications in Genome Analysis. CoRR abs/1506.09153 (2015) - [i3]Stephanie L. Hyland, Theofanis Karaletsos, Gunnar Rätsch:
A Generative Model of Words and Relationships from Multiple Sources. CoRR abs/1510.00259 (2015) - [i2]Trevor Darrell, Marius Kloft, Massimiliano Pontil, Gunnar Rätsch, Erik Rodner:
Machine Learning with Interdependent and Non-identically Distributed Data (Dagstuhl Seminar 15152). Dagstuhl Reports 5(4): 18-55 (2015) - 2014
- [j40]Vipin T. Sreedharan, Sebastian J. Schultheiß, Géraldine Jean, André Kahles, Regina Bohnert, Philipp Drewe, Pramod Mudrakarta, Nico Görnitz, Georg Zeller, Gunnar Rätsch:
Oqtans: the RNA-seq workbench in the cloud for complete and reproducible quantitative transcriptome analysis. Bioinform. 30(9): 1300-1301 (2014) - [j39]Vipin T. Sreedharan, Sebastian J. Schultheiß, Géraldine Jean, André Kahles, Regina Bohnert, Philipp Drewe, Pramod Mudrakarta, Nico Görnitz, Georg Zeller, Gunnar Rätsch:
Oqtans: a multifunctional workbench for RNA-seq data analysis. BMC Bioinform. 15(S-3): A7 (2014) - [j38]Christian Widmer, Marius Kloft, Xinghua Lou, Gunnar Rätsch:
Regularization-Based Multitask Learning With Applications to Genome Biology and Biological Imaging. Künstliche Intell. 28(1): 29-33 (2014) - [c47]Søren Brunak, Francisco M. de la Vega, Gunnar Rätsch, Joshua M. Stuart:
Session Introduction. Pacific Symposium on Biocomputing 2014: 1-2 - 2013
- [j37]Jonas Behr, André Kahles, Yi Zhong, Vipin T. Sreedharan, Philipp Drewe, Gunnar Rätsch:
MITIE: Simultaneous RNA-Seq-based transcript identification and quantification in multiple samples. Bioinform. 29(20): 2529-2538 (2013) - [j36]Richard R. Stein, Vanni Bucci, Nora C. Toussaint, Charlie G. Buffie, Gunnar Rätsch, Eric G. Pamer, Chris Sander, João B. Xavier:
Ecological Modeling from Time-Series Inference: Insight into Dynamics and Stability of Intestinal Microbiota. PLoS Comput. Biol. 9(12) (2013) - [c46]Christian Widmer, Marius Kloft, Gunnar Rätsch:
Multi-task Learning for Computational Biology: Overview and Outlook. Empirical Inference 2013: 117-127 - [c45]Katherine Redfield Chan, Xinghua Lou, Theofanis Karaletsos, Christopher Crosbie, Stuart M. Gardos, David Artz, Gunnar Rätsch:
An Empirical Analysis of Topic Modeling for Mining Cancer Clinical Notes. ICDM Workshops 2013: 56-63 - [i1]Christian Widmer, Philipp Drewe, Xinghua Lou, Shefali Umrania, Stephanie Heinrich, Gunnar Rätsch:
GRED: Graph-Regularized 3D Shape Reconstruction from Highly Anisotropic and Noisy Images. CoRR abs/1309.4426 (2013) - 2012
- [c44]Christian Widmer, Marius Kloft, Nico Görnitz, Gunnar Rätsch:
Efficient Training of Graph-Regularized Multitask SVMs. ECML/PKDD (1) 2012: 633-647 - [c43]Christian Widmer, Gunnar Rätsch:
Multitask Learning in Computational Biology. ICML Unsupervised and Transfer Learning 2012: 207-216 - 2011
- [j35]Johannes Eichner, Georg Zeller, Sascha Laubinger, Gunnar Rätsch:
Support vector machines-based identification of alternative splicing in Arabidopsis thaliana from whole-genome tiling arrays. BMC Bioinform. 12: 55 (2011) - [j34]Sebastian J. Schultheiß, Géraldine Jean, Jonas Behr, Regina Bohnert, Philipp Drewe, Nico Görnitz, André Kahles, Pramod Mudrakarta, Vipin T. Sreedharan, Georg Zeller, Gunnar Rätsch:
Oqtans: a Galaxy-integrated workflow for quantitative transcriptome analysis from NGS Data. BMC Bioinform. 12(S-11): A7 (2011) - [c42]Nico Görnitz, Christian Widmer, Georg Zeller, André Kahles, Sören Sonnenburg, Gunnar Rätsch:
Hierarchical Multitask Structured Output Learning for Large-scale Sequence Segmentation. NIPS 2011: 2690-2698 - 2010
- [j33]Jonas Behr, Regina Bohnert, Georg Zeller, Gabriele Beate Schweikert, Lisa Hartmann, Gunnar Rätsch:
Next generation genome annotation with mGene.ngs. BMC Bioinform. 11(S-10): O8 (2010) - [j32]Christian Widmer, Nora C. Toussaint, Yasemin Altun, Gunnar Rätsch:
Inferring latent task structure for Multitask Learning by Multiple Kernel Learning. BMC Bioinform. 11(S-8): S5 (2010) - [j31]Nora C. Toussaint, Christian Widmer, Oliver Kohlbacher, Gunnar Rätsch:
Exploiting physico-chemical properties in string kernels. BMC Bioinform. 11(S-8): S7 (2010) - [j30]Sören Sonnenburg, Gunnar Rätsch, Sebastian Henschel, Christian Widmer, Jonas Behr, Alexander Zien, Fabio De Bona, Alexander Binder, Christian Gehl, Vojtech Franc:
The SHOGUN Machine Learning Toolbox. J. Mach. Learn. Res. 11: 1799-1802 (2010) - [j29]Regina Bohnert, Gunnar Rätsch:
rQuant.web: a tool for RNA-Seq-based transcript quantitation. Nucleic Acids Res. 38(Web-Server-Issue): 348-351 (2010) - [c41]Christian Widmer, Nora C. Toussaint, Yasemin Altun, Oliver Kohlbacher, Gunnar Rätsch:
Novel Machine Learning Methods for MHC Class I Binding Prediction. PRIB 2010: 98-109 - [c40]Christian Widmer, Jose Leiva, Yasemin Altun, Gunnar Rätsch:
Leveraging Sequence Classification by Taxonomy-Based Multitask Learning. RECOMB 2010: 522-534
2000 – 2009
- 2009
- [j28]Sebastian J. Schultheiß, Wolfgang Busch, Jan Lohmann, Oliver Kohlbacher, Gunnar Rätsch:
KIRMES: kernel-based identification of regulatory modules in euchromatic sequences. Bioinform. 25(16): 2126-2133 (2009) - [j27]Regina Bohnert, Jonas Behr, Gunnar Rätsch:
Transcript quantification with RNA-Seq data. BMC Bioinform. 10(S-13): 0 (2009) - [j26]Sebastian J. Schultheiß, Wolfgang Busch, Jan Lohmann, Oliver Kohlbacher, Gunnar Rätsch:
KIRMES: kernel-based identification of regulatory modules in euchromatic sequences. BMC Bioinform. 10(S-13): 0 (2009) - [j25]Gabriele Beate Schweikert, Jonas Behr, Alexander Zien, Georg Zeller, Cheng Soon Ong, Sören Sonnenburg, Gunnar Rätsch:
mGene.web: a web service for accurate computational gene finding. Nucleic Acids Res. 37(Web-Server-Issue): 312-316 (2009) - [j24]Arnulf B. A. Graf, Olivier Bousquet, Gunnar Rätsch, Bernhard Schölkopf:
Prototype Classification: Insights from Machine Learning. Neural Comput. 21(1): 272-300 (2009) - [c39]Alexander Zien, Nicole Krämer, Sören Sonnenburg, Gunnar Rätsch:
The Feature Importance Ranking Measure. ECML/PKDD (2) 2009: 694-709 - 2008
- [j23]Regina Bohnert, Georg Zeller, Richard M. Clark, Kevin L. Childs, Victor Jun M. Ulat, Renee Stokowski, Dennis Ballinger, Kelly Frazer, David Cox, Richard M. Bruskiewich, C. Robin Buell, Jan Leach, Hei Leung, Kenneth L. McNally, Detlef Weigel, Gunnar Rätsch:
Revealing sequence variation patterns in rice with machine learning methods. BMC Bioinform. 9(S-10) (2008) - [j22]Fabio De Bona, Stephan Ossowski, Korbinian Schneeberger, Gunnar Rätsch:
Optimal spliced alignments of short sequence reads. BMC Bioinform. 9(S-10) (2008) - [j21]Asa Ben-Hur, Cheng Soon Ong, Sören Sonnenburg, Bernhard Schölkopf, Gunnar Rätsch:
Support Vector Machines and Kernels for Computational Biology. PLoS Comput. Biol. 4(10) (2008) - [c38]Fabio De Bona, Stephan Ossowski, Korbinian Schneeberger, Gunnar Rätsch:
Optimal spliced alignments of short sequence reads. ECCB 2008: 174-180