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Publication search results
found 29 matches
- 2024
- Hamdiye Uzuner, Annette Paschen, Dirk Schadendorf, Johannes Köster:
Orthanq: transparent and uncertainty-aware haplotype quantification with application in HLA-typing. BMC Bioinform. 25(1): 240 (2024) - 2023
- Till Hartmann
, Christopher Schröder, Elias Kuthe, David Laehnemann
, Johannes Köster:
Insane in the vembrane: filtering and transforming VCF/BCF files. Bioinform. 39(1) (2023) - 2022
- Wolfgang Ecker, Peer Adelt, Wolfgang Müller, Reinhold Heckmann, Milos Krstic
, Vladimir Herdt, Rolf Drechsler
, Gerhard Angst, Ralf Wimmer, Andreas Mauderer, Rafael Stahl, Karsten Emrich, Daniel Mueller-Gritschneder
, Bernd Becker
, Philipp Scholl, Eyck Jentzsch, Jan Schlamelcher, Kim Grüttner, Paul Palomero Bernardo, Oliver Bringmann, Mihaela Damian, Julian Oppermann, Andreas Koch, Jörg Bormann, Johannes Partzsch
, Christian Mayr, Wolfgang Kunz:
The Scale4Edge RISC-V Ecosystem. DATE 2022: 808-813 - Sven Rahmann, Alexander Schramm, Johannes Köster:
Cancer Diagnostics and Therapy from Molecular Data. Mach. Learn. under Resour. Constraints Vol. 3 (3) 2022: 43-57 - Bianca K. Stöcker, Till Schäfer, Petra Mutzel, Johannes Köster, Nils M. Kriege, Sven Rahmann:
Protein Complex Similarity. Mach. Learn. under Resour. Constraints Vol. 3 (3) 2022: 85-102 - 2021
- Yingbo Cui
, Zihang Wang, Johannes Köster, Xiangke Liao, Shaoliang Peng
, Tao Tang, Chun Huang, Canqun Yang:
VISPR-online: a web-based interactive tool to visualize CRISPR screening experiments. BMC Bioinform. 22(1): 344 (2021) - Felix Mölder
, Kim Philipp Jablonski
, Brice Letcher
, Michael B. Hall
, Christopher Tomkins-Tinch
, Vanessa V. Sochat
, Jan Forster, Soohyun Lee
, Sven Twardziok, Alexander Kanitz
, Andreas Wilm, Manuel Holtgrewe, Sven Rahmann, Sven Nahnsen, Johannes Köster
:
Sustainable data analysis with Snakemake. F1000Research 10: 33 (2021) - 2019
- Jasmijn A. Baaijens
, Bastiaan Van der Roest, Johannes Köster, Leen Stougie, Alexander Schönhuth
:
Full-length de novo viral quasispecies assembly through variation graph construction. Bioinform. 35(24): 5086-5094 (2019) - Johannes Köster, Myles Brown, Xiaole Shirley Liu:
A Bayesian model for single cell transcript expression analysis on MERFISH data. Bioinform. 35(6): 995-1001 (2019) - Johannes Köster, Myles Brown, Xiaole Shirley Liu:
A Bayesian model for single cell transcript expression analysis on MERFISH data. Bioinform. 35(13): 2347 (2019) - Lars Klitzke
, Johannes Meyer
, Tilman Leune, Carsten Koch, Frank Köster:
DAGMaR: A DAG-based Robust Road Membership Estimation Framework for Scenario Mining. IoTSMS 2019: 358-365 - Bianca K. Stöcker
, Till Schäfer
, Petra Mutzel
, Johannes Köster
, Nils M. Kriege
, Sven Rahmann
:
Protein Complex Similarity Based on Weisfeiler-Lehman Labeling. SISAP 2019: 308-322 - David Laehnemann
, Johannes Köster
, Ewa Szczurek, Davis J. McCarthy
, Stephanie C. Hicks
, Mark D. Robinson
, Catalina A. Vallejos
, Niko Beerenwinkel, Kieran R. Campbell, Ahmed Mahfouz
, Luca Pinello, Pavel Skums, Alexandros Stamatakis
, Camille Stephan-Otto Attolini, Samuel Aparicio, Jasmijn A. Baaijens
, Marleen Balvert, Buys de Barbanson, Antonio Cappuccio, Giacomo Corleone, Bas E. Dutilh
, Maria Florescu
, Victor Guryev, Rens Holmer
, Katharina Jahn, Thamar Jessurun Lobo
, Emma M. Keizer, Indu Khatri
, Szymon M. Kielbasa
, Jan O. Korbel, Alexey M. Kozlov
, Tzu-Hao Kuo, Boudewijn P. F. Lelieveldt, Ion I. Mandoiu
, John C. Marioni
, Tobias Marschall
, Felix Mölder
, Amir Niknejad, Lukasz Raczkowski, Marcel J. T. Reinders, Jeroen de Ridder
, Antoine-Emmanuel Saliba
, Antonios Somarakis, Oliver Stegle, Fabian J. Theis, Huan Yang, Alex Zelikovsky, Alice C. McHardy, Benjamin J. Raphael, Sohrab P. Shah, Alexander Schönhuth:
12 Grand Challenges in Single-Cell Data Science. PeerJ Prepr. 7: e27885 (2019) - 2018
- Johannes Köster, Sven Rahmann
:
Snakemake - a scalable bioinformatics workflow engine. Bioinform. 34(20): 3600 (2018) - M. Kösters, Johannes Leufken
, Stefan Schulze
, K. Sugimoto, Joshua Klein
, R. P. Zahedi, Michael Hippler
, S. A Leidel, Christian Fufezan
:
pymzML v2.0: introducing a highly compressed and seekable gzip format. Bioinform. 34(14): 2513-2514 (2018) - MacIntosh Cornwell, Mahesh Vangala, Len Taing, Zachary Herbert, Johannes Köster, Bo Li, Hanfei Sun, Taiwen Li
, Jian Zhang
, Xintao Qiu, Matthew Pun, Rinath Jeselsohn, Myles Brown, Xiaole Shirley Liu, Henry W. Long:
VIPER: Visualization Pipeline for RNA-seq, a Snakemake workflow for efficient and complete RNA-seq analysis. BMC Bioinform. 19(1): 135:1-135:14 (2018) - Johannes Wienke
, Dennis Leroy Wigand, Norman Köster
, Sebastian Wrede
:
Model-Based Performance Testing for Robotics Software Components. IRC 2018: 25-32 - 2017
- Nadine Bergner, Hilde Köster, Johannes Magenheim, Kathrin Müller, Ralf Romeike, Ulrik Schroeder, Carsten Schulte:
Zieldimensionen für frühe informatische Bildung im Kindergarten und in der Grundschule. INFOS 2017: 53-62 - 2016
- Johannes Köster:
Rust-Bio: a fast and safe bioinformatics library. Bioinform. 32(3): 444-446 (2016) - Jian Ma, Johannes Köster, Qian Qin
, Shengen Hu, Wei Li, Chenhao Chen, Qingyi Cao, Jinzeng Wang, Shenglin Mei, Qi Liu, Han Xu, Xiaole Shirley Liu:
CRISPR-DO for genome-wide CRISPR design and optimization. Bioinform. 32(21): 3336-3338 (2016) - Bianca K. Stöcker, Johannes Köster, Sven Rahmann
:
SimLoRD: Simulation of Long Read Data. Bioinform. 32(17): 2704-2706 (2016) - 2015
- Matteo Michel, Johannes Koesters, Benedikt Geukes:
Modulare Verifikation von Non-Mainline Chip-Level Funktionen. MBMV 2015: 14-19 - Johannes Köster:
Rust-Bio - a fast and safe bioinformatics library. CoRR abs/1509.02796 (2015) - 2014
- Johannes Köster:
Parallelization, scalability, and reproducibility in next generation sequencing analysis. Dortmund University, Germany, 2014 - Johannes Koesters, Alex Goryachev:
Verification of Non-Mainline Functions in Todays Processor Chips. DAC 2014: 1:1-1:3 - Johannes Köster, Sven Rahmann:
Massively parallel read mapping on GPUs with PEANUT. CoRR abs/1403.1706 (2014) - 2012
- Johannes Köster, Sven Rahmann
:
Snakemake - a scalable bioinformatics workflow engine. Bioinform. 28(19): 2520-2522 (2012) - Johannes Köster, Sven Rahmann:
Building and Documenting Workflows with Python-Based Snakemake. GCB 2012: 49-56 - 2006
- Christoph Jäschke, Ralf Winkelmann, Johannes Kösters:
Control Register Specification and Verification in Complex Systems. MBMV 2006: 349-358
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