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Christos A. Ouzounis
Person information
- affiliation: Centre for Research & Technology Hellas, Thessalonica, Greece
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Journal Articles
- 2024
- [j45]Christos A. Ouzounis
:
The Net of Life, a short story: Intricate patterns of gene flows across hundreds of extant genomes, all the way to LUCA. Biosyst. 239: 105199 (2024) - 2023
- [j44]Dimitrios Vasileiou, Christos Karapiperis, Ismini Baltsavia, Anastasia Chasapi, Dag G. Ahrén, Paul J. Janssen
, Ioannis Iliopoulos, Vasilis J. Promponas, Anton J. Enright, Christos A. Ouzounis
:
CGG toolkit: Software components for computational genomics. PLoS Comput. Biol. 19(11) (2023) - 2022
- [j43]Federica Quaglia
, Bálint Mészáros
, Edoardo Salladini
, András Hatos
, Rita Pancsa
, Lucía B. Chemes
, Mátyás Pajkos
, Tamas Lazar
, Samuel Peña-Díaz
, Jaime Santos
, Veronika Ács
, Nazanin Farahi
, Erzsébet Fichó
, Maria Cristina Aspromonte
, Claudio Bassot
, Anastasia Chasapi
, Norman E. Davey
, Radoslav Davidovic
, Laszlo Dobson
, Arne Elofsson
, Gábor Erdös
, Pascale Gaudet
, Michelle G. Giglio
, Juliana Glavina
, Javier Iserte
, Valentín Iglesias
, Zsófia L. Kálmán
, Matteo Lambrughi
, Emanuela Leonardi
, Sonia Longhi
, Sandra Macedo-Ribeiro
, Emiliano Maiani
, Julia Marchetti
, Cristina Marino Buslje
, Attila Meszaros
, Alexander Miguel Monzon
, Giovanni Minervini
, Suvarna Nadendla
, Juliet F. Nilsson
, Marián Novotný
, Christos A. Ouzounis
, Nicolas Palopoli
, Elena Papaleo
, Pedro J. Barbosa Pereira
, Gabriele Pozzati
, Vasilis J. Promponas
, Jordi Pujols
, Alma Carolina Sanchez Rocha
, Martin Salas
, Luciana Rodriguez Sawicki
, Éva Schád, Aditi Shenoy
, Tamás Szaniszló
, Konstantinos D. Tsirigos
, Nevena Veljkovic
, Gustavo D. Parisi
, Salvador Ventura
, Zsuzsanna Dosztányi
, Peter Tompa
, Silvio C. E. Tosatto
, Damiano Piovesan
:
DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation. Nucleic Acids Res. 50(D1): 480-487 (2022) - 2021
- [j42]Christos Karapiperis, Anastasia Chasapi
, Lefteris Angelis, Zacharias G. Scouras, Pier G. Mastroberardino, Soile Tapio, Michael Atkinson, Christos A. Ouzounis
:
The Coming of Age for Big Data in Systems Radiobiology, an Engineering Perspective. Big Data 9(1): 63-71 (2021) - 2020
- [j41]Pablo Mier
, Lisanna Paladin
, Stella Tamana
, Sophia Petrosian, Borbála Hajdu-Soltész, Annika Urbanek, Aleksandra Gruca, Dariusz Plewczynski, Marcin Grynberg
, Pau Bernadó
, Zoltán Gáspári, Christos A. Ouzounis
, Vasilis J. Promponas
, Andrey V. Kajava
, John M. Hancock
, Silvio C. E. Tosatto
, Zsuzsanna Dosztányi, Miguel A. Andrade-Navarro
:
Disentangling the complexity of low complexity proteins. Briefings Bioinform. 21(2): 458-472 (2020) - [j40]Anastasia Chasapi
, Vasilis J. Promponas
, Christos A. Ouzounis
:
The bioinformatics wealth of nations. Bioinform. 36(9): 2963-2965 (2020) - [j39]András Hatos
, Borbála Hajdu-Soltész, Alexander Miguel Monzon
, Nicolas Palopoli, Lucía Álvarez
, Burcu Aykaç Fas
, Claudio Bassot, Guillermo I. Benítez, Martina Bevilacqua
, Anastasia Chasapi
, Lucía B. Chemes
, Norman E. Davey
, Radoslav Davidovic
, A. Keith Dunker, Arne Elofsson, Julien Gobeill, Nicolás S. González Foutel, Govindarajan Sudha, Mainak Guharoy
, Tamás Horváth, Valentin Iglesias
, Andrey V. Kajava
, Orsolya P. Kovács, John Lamb, Matteo Lambrughi
, Tamas Lazar
, Jeremy Y. Leclercq
, Emanuela Leonardi
, Sandra Macedo-Ribeiro
, Mauricio Macossay-Castillo, Emiliano Maiani
, José A. Manso
, Cristina Marino Buslje
, Elizabeth Martínez-Pérez
, Bálint Mészáros
, Ivan Micetic, Giovanni Minervini
, Nikoletta Murvai
, Marco Necci
, Christos A. Ouzounis
, Mátyás Pajkos, Lisanna Paladin, Rita Pancsa, Elena Papaleo
, Gustavo D. Parisi, Emilie Pasche
, Pedro J. Barbosa Pereira
, Vasilis J. Promponas
, Jordi Pujols, Federica Quaglia
, Patrick Ruch
, Marco Salvatore, Éva Schád, Beáta Szabó
, Tamás Szaniszló
, Stella Tamana
, Ágnes Tantos, Nevena Veljkovic, Salvador Ventura
, Wim F. Vranken, Zsuzsanna Dosztányi
, Peter Tompa
, Silvio C. E. Tosatto
, Damiano Piovesan:
DisProt: intrinsic protein disorder annotation in 2020. Nucleic Acids Res. 48(Database-Issue): D269-D276 (2020) - 2019
- [j38]Anastasia Chasapi, Michalis Aivaliotis, Lefteris Angelis, Anastasios Chanalaris, Ioannis Iliopoulos, Ilias Kappas, Christos Karapiperis, Nikos Kyrpides
, Evangelos Pafilis, Eleftherios Panteris, Pantelis Topalis, George Tsiamis, Ioannis S. Vizirianakis, Metaxia Vlassi, Vasilis J. Promponas, Christos A. Ouzounis:
Establishment of computational biology in Greece and Cyprus: Past, present, and future. PLoS Comput. Biol. 15(12) (2019) - 2017
- [j37]Fotis E. Psomopoulos
, Dimitrios M. Vitsios
, Shakuntala Baichoo
, Christos A. Ouzounis
:
BioPAXViz: a cytoscape application for the visual exploration of metabolic pathway evolution. Bioinform. 33(9): 1418-1420 (2017) - [j36]Shakuntala Baichoo
, Christos A. Ouzounis
:
Computational complexity of algorithms for sequence comparison, short-read assembly and genome alignment. Biosyst. 156: 72-85 (2017) - 2016
- [j35]Christos Karapiperis, Stefan J. Kempf, Roel Quintens
, Omid Azimzadeh
, Victoria Linares Vidal
, Simonetta Pazzaglia, Dimitry Bazyka, Pier G. Mastroberardino, Zacharias G. Scouras, Soile Tapio
, Mohammed Abderrafi Benotmane
, Christos A. Ouzounis
:
Brain Radiation Information Data Exchange (BRIDE): integration of experimental data from low-dose ionising radiation research for pathway discovery. BMC Bioinform. 17: 212 (2016) - 2015
- [j34]Nikolas Papanikolaou, Georgios A. Pavlopoulos
, Evangelos Pafilis, Theodosios Theodosiou
, Reinhard Schneider
, Venkata P. Satagopam
, Christos A. Ouzounis
, Aristides G. Eliopoulos
, Vasilis J. Promponas
, Ioannis Iliopoulos:
BioTextQuest+: a knowledge integration platform for literature mining and concept discovery. Bioinform. 31(6): 979 (2015) - [j33]Dimitrios M. Vitsios, Fotis E. Psomopoulos
, Pericles A. Mitkas, Christos A. Ouzounis:
Inference of Pathway Decomposition Across Multiple Species Through Gene Clustering. Int. J. Artif. Intell. Tools 24(1): 1540003:1-1540003:27 (2015) - 2014
- [j32]Vasilis J. Promponas
, Christos A. Ouzounis
, Ioannis Iliopoulos:
Experimental evidence validating the computational inference of functional associations from gene fusion events: a critical survey. Briefings Bioinform. 15(3): 443-454 (2014) - [j31]Nikolas Papanikolaou, Georgios A. Pavlopoulos
, Evangelos Pafilis, Theodosios Theodosiou
, Reinhard Schneider
, Venkata P. Satagopam
, Christos A. Ouzounis
, Aristides G. Eliopoulos
, Vasilis J. Promponas
, Ioannis Iliopoulos:
BioTextQuest+: a knowledge integration platform for literature mining and concept discovery. Bioinform. 30(22): 3249-3256 (2014) - 2012
- [j30]Christos A. Ouzounis
:
Rise and Demise of Bioinformatics? Promise and Progress. PLoS Comput. Biol. 8(4) (2012) - 2011
- [j29]Nikolas Papanikolaou, Evangelos Pafilis, Stavros Nikolaou, Christos A. Ouzounis
, Ioannis Iliopoulos, Vasilis J. Promponas
:
BioTextQuest: a web-based biomedical text mining suite for concept discovery. Bioinform. 27(23): 3327-3328 (2011) - 2010
- [j28]Chrysa Pantzartzi, Elena Drosopoulou
, Minas Yiangou, Ignat Drozdov
, Sophia Tsoka
, Christos A. Ouzounis
, Zacharias G. Scouras:
Promoter Complexity and Tissue-Specific Expression of Stress Response Components in Mytilus galloprovincialis, a Sessile Marine Invertebrate Species. PLoS Comput. Biol. 6(7) (2010) - [j27]Najl V. Valeyev, Christian Hundhausen, Yoshinori Umezawa, Nikolai V. Kotov, Gareth Williams, Alex Clop, Crysanthi Ainali, Christos A. Ouzounis
, Sophia Tsoka
, Frank O. Nestle:
A Systems Model for Immune Cell Interactions Unravels the Mechanism of Inflammation in Human Skin. PLoS Comput. Biol. 6(12) (2010) - 2009
- [j26]Shiri Freilich, Leon Goldovsky, Assaf Gottlieb, Eric Blanc, Sophia Tsoka
, Christos A. Ouzounis
:
Stratification of co-evolving genomic groups using ranked phylogenetic profiles. BMC Bioinform. 10: 355 (2009) - 2008
- [j25]Theodosios Theodosiou
, Nikos Darzentas, Lefteris Angelis, Christos A. Ouzounis
:
PuReD-MCL: a graph-based PubMed document clustering methodology. Bioinform. 24(17): 1935-1941 (2008) - 2007
- [j24]Benjamin Audit
, Emmanuel D. Levy, Walter R. Gilks, Leon Goldovsky, Christos A. Ouzounis
:
CORRIE: enzyme sequence annotation with confidence estimates. BMC Bioinform. 8(S-4) (2007) - 2006
- [j23]Núria López-Bigas
, Benjamin J. Blencowe, Christos A. Ouzounis
:
Highly consistent patterns for inherited human diseases at the molecular level. Bioinform. 22(3): 269-277 (2006) - 2005
- [j22]Victor Kunin
, Sarah A. Teichmann
, Martijn A. Huynen
, Christos A. Ouzounis
:
The properties of protein family space depend on experimental design. Bioinform. 21(11): 2618-2622 (2005) - [j21]Mike Smith, Victor Kunin
, Leon Goldovsky, Anton J. Enright
, Christos A. Ouzounis
:
MagicMatch - cross-referencing sequence identifiers across databases. Bioinform. 21(16): 3429-3430 (2005) - [j20]Leon Goldovsky, Paul J. Janssen
, Dag G. Ahrén, Benjamin Audit
, Ildefonso Cases
, Nikos Darzentas, Anton J. Enright
, Núria López-Bigas
, José M. Peregrín-Alvarez
, Mike Smith, Sophia Tsoka
, Victor Kunin
, Christos A. Ouzounis
:
CoGenT++: an extensive and extensible data environment for computational genomics. Bioinform. 21(19): 3806-3810 (2005) - [j19]Victor Kunin
, Christos A. Ouzounis
:
Clustering the annotation space of proteins. BMC Bioinform. 6: 24 (2005) - [j18]Emmanuel D. Levy, Christos A. Ouzounis
, Walter R. Gilks, Benjamin Audit
:
Probabilistic annotation of protein sequences based on functional classifications. BMC Bioinform. 6: 302 (2005) - 2004
- [j17]Dag G. Ahrén, Christos A. Ouzounis
:
Robustness of Metabolic Map Reconstruction. J. Bioinform. Comput. Biol. 2(3): 589-593 (2004) - 2003
- [j16]Ioannis Iliopoulos, Sophia Tsoka
, Miguel A. Andrade, Anton J. Enright
, Mark Carroll, Patrick Poullet
, Vasilis J. Promponas
, Theodore Liakopoulos, Giorgos Palaios, Claude Pasquier
, Stavros J. Hamodrakas, Javier Tamames
, Asutosh T. Yagnik, Anna Tramontano, Damien Devos
, Christian Blaschke, Alfonso Valencia, David Brett, David M. A. Martin
, Christophe Leroy, Isidore Rigoutsos
, Chris Sander, Christos A. Ouzounis
:
Evaluation of annotation strategies using an entire genome sequence. Bioinform. 19(6): 717-726 (2003) - [j15]Victor Kunin
, Christos A. Ouzounis
:
GeneTRACE - Reconstruction of Gene Content of Ancestral Species. Bioinform. 19(11): 1412-1416 (2003) - [j14]Paul J. Janssen
, Anton J. Enright
, Benjamin Audit
, Ildefonso Cases
, Leon Goldovsky, Nicola Harte, Victor Kunin
, Christos A. Ouzounis
:
COmplete GENome Tracking (COGENT): A Flexible Data Environment for Computational Genomics. Bioinform. 19(11): 1451-1452 (2003) - [j13]Christian Weinel, Maria D. Ermolaeva, Christos A. Ouzounis
:
PseuRECA: genome annotation and gene context analysis for Pseudomonas aeruginosa PAO1. Bioinform. 19(12): 1457-1460 (2003) - [j12]David P. Kreil, Christos A. Ouzounis
:
Comparison of sequence masking algorithms and the detection of biased protein sequence regions. Bioinform. 19(13): 1672-1681 (2003) - [j11]Christos A. Ouzounis
, Alfonso Valencia:
Early bioinformatics: the birth of a discipline - a personal view. Bioinform. 19(17): 2176-2190 (2003) - 2002
- [j10]Christos A. Ouzounis
:
Bioinformatics and the theoretical foundations of molecular biology. Bioinform. 18(3): 377-378 (2002) - [j9]Walter R. Gilks, Benjamin Audit
, Daniela De Angelis
, Sophia Tsoka
, Christos A. Ouzounis
:
Modeling the percolation of annotation errors in a database of protein sequences. Bioinform. 18(12): 1641-1649 (2002) - 2001
- [j8]Richard M. R. Coulson, Anton J. Enright
, Christos A. Ouzounis
:
Transcription-associated protein families are primarily taxon-specific. Bioinform. 17(1): 95-97 (2001) - [j7]Anton J. Enright
, Christos A. Ouzounis
:
BioLayout-an automatic graph layout algorithm for similarity visualization. Bioinform. 17(9): 853-854 (2001) - 2000
- [j6]Christos A. Ouzounis
:
Two or three myths about bioinformatics. Bioinform. 16(3): 187-189 (2000) - [j5]Anton J. Enright
, Christos A. Ouzounis
:
GeneRAGE: a robust algorithm for sequence clustering and domain detection. Bioinform. 16(5): 451-457 (2000) - [j4]Vasilis J. Promponas
, Anton J. Enright
, Sophia Tsoka
, David P. Kreil, Christophe Leroy, Stavros J. Hamodrakas, Chris Sander, Christos A. Ouzounis
:
CAST: an iterative algorithm for the complexity analysis of sequence tracts. Bioinform. 16(10): 915-922 (2000) - 1999
- [j3]Miguel A. Andrade, Nigel P. Brown
, Christophe Leroy, S. Hörsch, Antoine de Daruvar, C. Reich, Angelo Franchini
, Javier Tamames
, Alfonso Valencia, Christos A. Ouzounis
, Chris Sander:
Automated genome sequence analysis and annotation. Bioinform. 15(5): 391-412 (1999) - 1998
- [j2]Javier Tamames
, Christos A. Ouzounis
, Georg Casari, Chris Sander, Alfonso Valencia:
EUCLID: automatic classification of proteins in functional classes by their database annotations. Bioinform. 14(6): 542-543 (1998) - 1997
- [j1]Miguel A. Andrade, Georg Casari, Antoine de Daruvar, Chris Sander, Reinhard Schneider, Javier Tamames
, Alfonso Valencia, Christos A. Ouzounis
:
Sequence analysis of the Methanococcus jannaschii genome and the prediction of protein function. Comput. Appl. Biosci. 13(4): 481-483 (1997)
Conference and Workshop Papers
- 2023
- [c13]Konstantinos F. Kantelis
, Vassilios Asteriou
, Aliki Papadimitriou
, Anthi Petrou
, Christos A. Ouzounis
, Lefteris Angelis
, Ioannis S. Vizirianakis
, Petros Nicopolitidis
, Georgios I. Papadimitriou
:
Bio-Electrical Nanonetworks: A New Paradigm of Biological Nanocommunication based on Living Cable Bacteria Filaments. NANOCOM 2023: 148-149 - 2017
- [c12]Christos A. Ouzounis, Alex Kilias, Christos Mousas
:
Kernel Projection of Latent Structures Regression for Facial Animation Retargeting. VRIPHYS 2017: 59-65 - 2015
- [c11]Christos A. Ouzounis, Christos Mousas
, Christos-Nikolaos Anagnostopoulos, Paul Newbury:
Using Personalized Finger Gestures for Navigating Virtual Characters. VRIPHYS 2015: 5-14 - 2012
- [c10]Metin Akay, Yuan-Ting Zhang, Konstantina S. Nikita, Miguel A. Andrade, Christos A. Ouzounis:
Keynote lectures. BIBE 2012: 1-10 - [c9]Dimitrios M. Vitsios, Fotis E. Psomopoulos
, Pericles A. Mitkas, Christos A. Ouzounis:
Multi-genome Core Pathway Identification through Gene Clustering. AIAI (2) 2012: 545-555 - 2004
- [c8]Núria López-Bigas, Christos A. Ouzounis:
Properties of Genes involved in Human Genetic Disease. Spanish Bioinformatics Conference 2004: 45-46 - 2001
- [c7]Ioannis Iliopoulos, Anton J. Enright, Christos A. Ouzounis:
TEXTQUEST: Document Clustering of MEDLINE Abstracts For Concept Discovery In Molecular Biology. Pacific Symposium on Biocomputing 2001: 384-395 - 2000
- [c6]Christos A. Ouzounis:
A Million Annotations for the Molecular Biologist. German Conference on Bioinformatics 2000: 1-2 - 1999
- [c5]Christian Blaschke, Miguel A. Andrade, Christos A. Ouzounis, Alfonso Valencia:
Automatic Extraction of Biological Information from Scientific Text: Protein-Protein Interactions. ISMB 1999: 60-67 - 1997
- [c4]Marie desJardins, Peter D. Karp, Markus Krummenacker, Thomas J. Lee, Christos A. Ouzounis:
Prediction of Enzyme Classification from Protein Sequence without the Use of Sequence Similarity. ISMB 1997: 92-99 - 1996
- [c3]Peter D. Karp, Christos A. Ouzounis, Suzanne M. Paley:
HinCyc: A Knowledge Base of the Complete Genome and Metabolic Pathways of H. influenzae. ISMB 1996: 116-124 - 1995
- [c2]Christos A. Ouzounis, Alfonso Valencia, Javier Tamames
, Peer Bork, Chris Sander:
The Functional Composition of Living Machines as a Design Principle for Artificial Organisms. ECAL 1995: 843-851 - 1994
- [c1]Michael Scharf, Reinhard Schneider, Georg Casari, Peer Bork, Alfonso Valencia, Christos A. Ouzounis, Chris Sander:
GeneQuiz: A Workbench for Sequence Analysis. ISMB 1994: 348-353
Editorship
- 1997
- [e1]Terry Gaasterland, Peter D. Karp, Kevin Karplus, Christos A. Ouzounis, Chris Sander, Alfonso Valencia:
Proceedings of the 5th International Conference on Intelligent Systems for Molecular Biology, Halkidiki, Greece, June 21-26, 1997. AAAI 1997, ISBN 1-57735-022-7 [contents]
Informal and Other Publications
- 2017
- [i1]Christos A. Ouzounis, Alex Kilias, Christos Mousas:
Kernel Projection of Latent Structures Regression for Facial Animation Retargeting. CoRR abs/1707.09629 (2017)
Coauthor Index
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