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Christos A. Ouzounis

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affiliation: Centre for Research & Technology Hellas, Thessalonica, Greece

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2024
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Christos A. Ouzounis:
The Net of Life, a short story: Intricate patterns of gene flows across hundreds of extant genomes, all the way to LUCA. Biosyst. 239: 105199 (2024)
2023
[j44]
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Dimitrios Vasileiou, Christos Karapiperis, Ismini Baltsavia, Anastasia Chasapi, Dag G. Ahrén, Paul J. Janssen, Ioannis Iliopoulos, Vasilis J. Promponas, Anton J. Enright, Christos A. Ouzounis:
CGG toolkit: Software components for computational genomics. PLoS Comput. Biol. 19(11) (2023)
2022
[j43]
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Federica Quaglia, Bálint Mészáros, Edoardo Salladini, András Hatos, Rita Pancsa, Lucía B. Chemes, Mátyás Pajkos, Tamas Lazar, Samuel Peña-Díaz, Jaime Santos, Veronika Ács, Nazanin Farahi, Erzsébet Fichó, Maria Cristina Aspromonte, Claudio Bassot, Anastasia Chasapi, Norman E. Davey, Radoslav Davidovic, Laszlo Dobson, Arne Elofsson, Gábor Erdös, Pascale Gaudet, Michelle G. Giglio, Juliana Glavina, Javier Iserte, Valentín Iglesias, Zsófia L. Kálmán, Matteo Lambrughi, Emanuela Leonardi, Sonia Longhi, Sandra Macedo-Ribeiro, Emiliano Maiani, Julia Marchetti, Cristina Marino Buslje, Attila Meszaros, Alexander Miguel Monzon, Giovanni Minervini, Suvarna Nadendla, Juliet F. Nilsson, Marián Novotný, Christos A. Ouzounis, Nicolas Palopoli, Elena Papaleo, Pedro J. Barbosa Pereira, Gabriele Pozzati, Vasilis J. Promponas, Jordi Pujols, Alma Carolina Sanchez Rocha, Martin Salas, Luciana Rodriguez Sawicki, Éva Schád, Aditi Shenoy, Tamás Szaniszló, Konstantinos D. Tsirigos, Nevena Veljkovic, Gustavo D. Parisi, Salvador Ventura, Zsuzsanna Dosztányi, Peter Tompa, Silvio C. E. Tosatto, Damiano Piovesan:
DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation. Nucleic Acids Res. 50(D1): 480-487 (2022)
2021
[j42]
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Christos Karapiperis, Anastasia Chasapi, Lefteris Angelis, Zacharias G. Scouras, Pier G. Mastroberardino, Soile Tapio, Michael Atkinson, Christos A. Ouzounis:
The Coming of Age for Big Data in Systems Radiobiology, an Engineering Perspective. Big Data 9(1): 63-71 (2021)
2020
[j41]
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  - journals/bib/MierPTPHUGPGBGO20
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Pablo Mier, Lisanna Paladin, Stella Tamana, Sophia Petrosian, Borbála Hajdu-Soltész, Annika Urbanek, Aleksandra Gruca, Dariusz Plewczynski, Marcin Grynberg, Pau Bernadó, Zoltán Gáspári, Christos A. Ouzounis, Vasilis J. Promponas, Andrey V. Kajava, John M. Hancock, Silvio C. E. Tosatto, Zsuzsanna Dosztányi, Miguel A. Andrade-Navarro:
Disentangling the complexity of low complexity proteins. Briefings Bioinform. 21(2): 458-472 (2020)
[j40]
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Anastasia Chasapi, Vasilis J. Promponas, Christos A. Ouzounis:
The bioinformatics wealth of nations. Bioinform. 36(9): 2963-2965 (2020)
[j39]
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András Hatos, Borbála Hajdu-Soltész, Alexander Miguel Monzon, Nicolas Palopoli, Lucía Álvarez, Burcu Aykaç Fas, Claudio Bassot, Guillermo I. Benítez, Martina Bevilacqua, Anastasia Chasapi, Lucía B. Chemes, Norman E. Davey, Radoslav Davidovic, A. Keith Dunker, Arne Elofsson, Julien Gobeill, Nicolás S. González Foutel, Govindarajan Sudha, Mainak Guharoy, Tamás Horváth, Valentin Iglesias, Andrey V. Kajava, Orsolya P. Kovács, John Lamb, Matteo Lambrughi, Tamas Lazar, Jeremy Y. Leclercq, Emanuela Leonardi, Sandra Macedo-Ribeiro, Mauricio Macossay-Castillo, Emiliano Maiani, José A. Manso, Cristina Marino Buslje, Elizabeth Martínez-Pérez, Bálint Mészáros, Ivan Micetic, Giovanni Minervini, Nikoletta Murvai, Marco Necci, Christos A. Ouzounis, Mátyás Pajkos, Lisanna Paladin, Rita Pancsa, Elena Papaleo, Gustavo D. Parisi, Emilie Pasche, Pedro J. Barbosa Pereira, Vasilis J. Promponas, Jordi Pujols, Federica Quaglia, Patrick Ruch, Marco Salvatore, Éva Schád, Beáta Szabó, Tamás Szaniszló, Stella Tamana, Ágnes Tantos, Nevena Veljkovic, Salvador Ventura, Wim F. Vranken, Zsuzsanna Dosztányi, Peter Tompa, Silvio C. E. Tosatto, Damiano Piovesan:
DisProt: intrinsic protein disorder annotation in 2020. Nucleic Acids Res. 48(Database-Issue): D269-D276 (2020)
2019
[j38]
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Anastasia Chasapi, Michalis Aivaliotis, Lefteris Angelis, Anastasios Chanalaris, Ioannis Iliopoulos, Ilias Kappas, Christos Karapiperis, Nikos Kyrpides, Evangelos Pafilis, Eleftherios Panteris, Pantelis Topalis, George Tsiamis, Ioannis S. Vizirianakis, Metaxia Vlassi, Vasilis J. Promponas, Christos A. Ouzounis:
Establishment of computational biology in Greece and Cyprus: Past, present, and future. PLoS Comput. Biol. 15(12) (2019)
2017
[j37]
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Fotis E. Psomopoulos, Dimitrios M. Vitsios, Shakuntala Baichoo, Christos A. Ouzounis:
BioPAXViz: a cytoscape application for the visual exploration of metabolic pathway evolution. Bioinform. 33(9): 1418-1420 (2017)
[j36]
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Shakuntala Baichoo, Christos A. Ouzounis:
Computational complexity of algorithms for sequence comparison, short-read assembly and genome alignment. Biosyst. 156: 72-85 (2017)
2016
[j35]
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Christos Karapiperis, Stefan J. Kempf, Roel Quintens, Omid Azimzadeh, Victoria Linares Vidal, Simonetta Pazzaglia, Dimitry Bazyka, Pier G. Mastroberardino, Zacharias G. Scouras, Soile Tapio, Mohammed Abderrafi Benotmane, Christos A. Ouzounis:
Brain Radiation Information Data Exchange (BRIDE): integration of experimental data from low-dose ionising radiation research for pathway discovery. BMC Bioinform. 17: 212 (2016)
2015
[j34]
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Nikolas Papanikolaou, Georgios A. Pavlopoulos, Evangelos Pafilis, Theodosios Theodosiou, Reinhard Schneider, Venkata P. Satagopam, Christos A. Ouzounis, Aristides G. Eliopoulos, Vasilis J. Promponas, Ioannis Iliopoulos:
BioTextQuest+: a knowledge integration platform for literature mining and concept discovery. Bioinform. 31(6): 979 (2015)
[j33]
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Dimitrios M. Vitsios, Fotis E. Psomopoulos, Pericles A. Mitkas, Christos A. Ouzounis:
Inference of Pathway Decomposition Across Multiple Species Through Gene Clustering. Int. J. Artif. Intell. Tools 24(1): 1540003:1-1540003:27 (2015)
2014
[j32]
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Vasilis J. Promponas, Christos A. Ouzounis, Ioannis Iliopoulos:
Experimental evidence validating the computational inference of functional associations from gene fusion events: a critical survey. Briefings Bioinform. 15(3): 443-454 (2014)
[j31]
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Nikolas Papanikolaou, Georgios A. Pavlopoulos, Evangelos Pafilis, Theodosios Theodosiou, Reinhard Schneider, Venkata P. Satagopam, Christos A. Ouzounis, Aristides G. Eliopoulos, Vasilis J. Promponas, Ioannis Iliopoulos:
BioTextQuest⁺: a knowledge integration platform for literature mining and concept discovery. Bioinform. 30(22): 3249-3256 (2014)
2012
[j30]
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Christos A. Ouzounis:
Rise and Demise of Bioinformatics? Promise and Progress. PLoS Comput. Biol. 8(4) (2012)
2011
[j29]
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Nikolas Papanikolaou, Evangelos Pafilis, Stavros Nikolaou, Christos A. Ouzounis, Ioannis Iliopoulos, Vasilis J. Promponas:
BioTextQuest: a web-based biomedical text mining suite for concept discovery. Bioinform. 27(23): 3327-3328 (2011)
2010
[j28]
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  - journals/ploscb/PantzartziDYDTOS10
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Chrysa Pantzartzi, Elena Drosopoulou, Minas Yiangou, Ignat Drozdov, Sophia Tsoka, Christos A. Ouzounis, Zacharias G. Scouras:
Promoter Complexity and Tissue-Specific Expression of Stress Response Components in Mytilus galloprovincialis, a Sessile Marine Invertebrate Species. PLoS Comput. Biol. 6(7) (2010)
[j27]
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Najl V. Valeyev, Christian Hundhausen, Yoshinori Umezawa, Nikolai V. Kotov, Gareth Williams, Alex Clop, Crysanthi Ainali, Christos A. Ouzounis, Sophia Tsoka, Frank O. Nestle:
A Systems Model for Immune Cell Interactions Unravels the Mechanism of Inflammation in Human Skin. PLoS Comput. Biol. 6(12) (2010)
2009
[j26]
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  - journals/bmcbi/FreilichGGBTO09
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Shiri Freilich, Leon Goldovsky, Assaf Gottlieb, Eric Blanc, Sophia Tsoka, Christos A. Ouzounis:
Stratification of co-evolving genomic groups using ranked phylogenetic profiles. BMC Bioinform. 10: 355 (2009)
2008
[j25]
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Theodosios Theodosiou, Nikos Darzentas, Lefteris Angelis, Christos A. Ouzounis:
PuReD-MCL: a graph-based PubMed document clustering methodology. Bioinform. 24(17): 1935-1941 (2008)
2007
[j24]
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Benjamin Audit, Emmanuel D. Levy, Walter R. Gilks, Leon Goldovsky, Christos A. Ouzounis:
CORRIE: enzyme sequence annotation with confidence estimates. BMC Bioinform. 8(S-4) (2007)
2006
[j23]
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Núria López-Bigas, Benjamin J. Blencowe, Christos A. Ouzounis:
Highly consistent patterns for inherited human diseases at the molecular level. Bioinform. 22(3): 269-277 (2006)
2005
[j22]
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Victor Kunin, Sarah A. Teichmann, Martijn A. Huynen, Christos A. Ouzounis:
The properties of protein family space depend on experimental design. Bioinform. 21(11): 2618-2622 (2005)
[j21]
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Mike Smith, Victor Kunin, Leon Goldovsky, Anton J. Enright, Christos A. Ouzounis:
MagicMatch - cross-referencing sequence identifiers across databases. Bioinform. 21(16): 3429-3430 (2005)
[j20]
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Leon Goldovsky, Paul J. Janssen, Dag G. Ahrén, Benjamin Audit, Ildefonso Cases, Nikos Darzentas, Anton J. Enright, Núria López-Bigas, José M. Peregrín-Alvarez, Mike Smith, Sophia Tsoka, Victor Kunin, Christos A. Ouzounis:
CoGenT++: an extensive and extensible data environment for computational genomics. Bioinform. 21(19): 3806-3810 (2005)
[j19]
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Victor Kunin, Christos A. Ouzounis:
Clustering the annotation space of proteins. BMC Bioinform. 6: 24 (2005)
[j18]
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Emmanuel D. Levy, Christos A. Ouzounis, Walter R. Gilks, Benjamin Audit:
Probabilistic annotation of protein sequences based on functional classifications. BMC Bioinform. 6: 302 (2005)
2004
[j17]
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Dag G. Ahrén, Christos A. Ouzounis:
Robustness of Metabolic Map Reconstruction. J. Bioinform. Comput. Biol. 2(3): 589-593 (2004)
2003
[j16]
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Ioannis Iliopoulos, Sophia Tsoka, Miguel A. Andrade, Anton J. Enright, Mark Carroll, Patrick Poullet, Vasilis J. Promponas, Theodore Liakopoulos, Giorgos Palaios, Claude Pasquier, Stavros J. Hamodrakas, Javier Tamames, Asutosh T. Yagnik, Anna Tramontano, Damien Devos, Christian Blaschke, Alfonso Valencia, David Brett, David M. A. Martin, Christophe Leroy, Isidore Rigoutsos, Chris Sander, Christos A. Ouzounis:
Evaluation of annotation strategies using an entire genome sequence. Bioinform. 19(6): 717-726 (2003)
[j15]
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Victor Kunin, Christos A. Ouzounis:
GeneTRACE - Reconstruction of Gene Content of Ancestral Species. Bioinform. 19(11): 1412-1416 (2003)
[j14]
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Paul J. Janssen, Anton J. Enright, Benjamin Audit, Ildefonso Cases, Leon Goldovsky, Nicola Harte, Victor Kunin, Christos A. Ouzounis:
COmplete GENome Tracking (COGENT): A Flexible Data Environment for Computational Genomics. Bioinform. 19(11): 1451-1452 (2003)
[j13]
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Christian Weinel, Maria D. Ermolaeva, Christos A. Ouzounis:
PseuRECA: genome annotation and gene context analysis for Pseudomonas aeruginosa PAO1. Bioinform. 19(12): 1457-1460 (2003)
[j12]
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David P. Kreil, Christos A. Ouzounis:
Comparison of sequence masking algorithms and the detection of biased protein sequence regions. Bioinform. 19(13): 1672-1681 (2003)
[j11]
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Christos A. Ouzounis, Alfonso Valencia:
Early bioinformatics: the birth of a discipline - a personal view. Bioinform. 19(17): 2176-2190 (2003)
2002
[j10]
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Christos A. Ouzounis:
Bioinformatics and the theoretical foundations of molecular biology. Bioinform. 18(3): 377-378 (2002)
[j9]
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Walter R. Gilks, Benjamin Audit, Daniela De Angelis, Sophia Tsoka, Christos A. Ouzounis:
Modeling the percolation of annotation errors in a database of protein sequences. Bioinform. 18(12): 1641-1649 (2002)
2001
[j8]
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Richard M. R. Coulson, Anton J. Enright, Christos A. Ouzounis:
Transcription-associated protein families are primarily taxon-specific. Bioinform. 17(1): 95-97 (2001)
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Anton J. Enright, Christos A. Ouzounis:
BioLayout-an automatic graph layout algorithm for similarity visualization. Bioinform. 17(9): 853-854 (2001)
2000
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Christos A. Ouzounis:
Two or three myths about bioinformatics. Bioinform. 16(3): 187-189 (2000)
[j5]
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Anton J. Enright, Christos A. Ouzounis:
GeneRAGE: a robust algorithm for sequence clustering and domain detection. Bioinform. 16(5): 451-457 (2000)
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Vasilis J. Promponas, Anton J. Enright, Sophia Tsoka, David P. Kreil, Christophe Leroy, Stavros J. Hamodrakas, Chris Sander, Christos A. Ouzounis:
CAST: an iterative algorithm for the complexity analysis of sequence tracts. Bioinform. 16(10): 915-922 (2000)
1999
[j3]
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Miguel A. Andrade, Nigel P. Brown, Christophe Leroy, S. Hörsch, Antoine de Daruvar, C. Reich, Angelo Franchini, Javier Tamames, Alfonso Valencia, Christos A. Ouzounis, Chris Sander:
Automated genome sequence analysis and annotation. Bioinform. 15(5): 391-412 (1999)
1998
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Javier Tamames, Christos A. Ouzounis, Georg Casari, Chris Sander, Alfonso Valencia:
EUCLID: automatic classification of proteins in functional classes by their database annotations. Bioinform. 14(6): 542-543 (1998)
1997
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Miguel A. Andrade, Georg Casari, Antoine de Daruvar, Chris Sander, Reinhard Schneider, Javier Tamames, Alfonso Valencia, Christos A. Ouzounis:
Sequence analysis of the Methanococcus jannaschii genome and the prediction of protein function. Comput. Appl. Biosci. 13(4): 481-483 (1997)

Conference and Workshop Papers

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2023
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Konstantinos F. Kantelis, Vassilios Asteriou, Aliki Papadimitriou, Anthi Petrou, Christos A. Ouzounis, Lefteris Angelis, Ioannis S. Vizirianakis, Petros Nicopolitidis, Georgios I. Papadimitriou:
Bio-Electrical Nanonetworks: A New Paradigm of Biological Nanocommunication based on Living Cable Bacteria Filaments. NANOCOM 2023: 148-149
2017
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  - conf/vriphys/OuzounisKM17
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Christos A. Ouzounis, Alex Kilias, Christos Mousas:
Kernel Projection of Latent Structures Regression for Facial Animation Retargeting. VRIPHYS 2017: 59-65
2015
[c11]
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Christos A. Ouzounis, Christos Mousas, Christos-Nikolaos Anagnostopoulos, Paul Newbury:
Using Personalized Finger Gestures for Navigating Virtual Characters. VRIPHYS 2015: 5-14
2012
[c10]
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  - conf/bibe/AkayZNAO12
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Metin Akay, Yuan-Ting Zhang, Konstantina S. Nikita, Miguel A. Andrade, Christos A. Ouzounis:
Keynote lectures. BIBE 2012: 1-10
[c9]
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Dimitrios M. Vitsios, Fotis E. Psomopoulos, Pericles A. Mitkas, Christos A. Ouzounis:
Multi-genome Core Pathway Identification through Gene Clustering. AIAI (2) 2012: 545-555
2004
[c8]
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Núria López-Bigas, Christos A. Ouzounis:
Properties of Genes involved in Human Genetic Disease. Spanish Bioinformatics Conference 2004: 45-46
2001
[c7]
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Ioannis Iliopoulos, Anton J. Enright, Christos A. Ouzounis:
TEXTQUEST: Document Clustering of MEDLINE Abstracts For Concept Discovery In Molecular Biology. Pacific Symposium on Biocomputing 2001: 384-395
2000
[c6]
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Christos A. Ouzounis:
A Million Annotations for the Molecular Biologist. German Conference on Bioinformatics 2000: 1-2
1999
[c5]
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Christian Blaschke, Miguel A. Andrade, Christos A. Ouzounis, Alfonso Valencia:
Automatic Extraction of Biological Information from Scientific Text: Protein-Protein Interactions. ISMB 1999: 60-67
1997
[c4]
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Marie desJardins, Peter D. Karp, Markus Krummenacker, Thomas J. Lee, Christos A. Ouzounis:
Prediction of Enzyme Classification from Protein Sequence without the Use of Sequence Similarity. ISMB 1997: 92-99
1996
[c3]
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Peter D. Karp, Christos A. Ouzounis, Suzanne M. Paley:
HinCyc: A Knowledge Base of the Complete Genome and Metabolic Pathways of H. influenzae. ISMB 1996: 116-124
1995
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Christos A. Ouzounis, Alfonso Valencia, Javier Tamames, Peer Bork, Chris Sander:
The Functional Composition of Living Machines as a Design Principle for Artificial Organisms. ECAL 1995: 843-851
1994
[c1]
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Michael Scharf, Reinhard Schneider, Georg Casari, Peer Bork, Alfonso Valencia, Christos A. Ouzounis, Chris Sander:
GeneQuiz: A Workbench for Sequence Analysis. ISMB 1994: 348-353

Editorship

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1997
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Terry Gaasterland, Peter D. Karp, Kevin Karplus, Christos A. Ouzounis, Chris Sander, Alfonso Valencia:
Proceedings of the 5th International Conference on Intelligent Systems for Molecular Biology, Halkidiki, Greece, June 21-26, 1997. AAAI 1997, ISBN 1-57735-022-7 [contents]

Informal and Other Publications

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2017
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Christos A. Ouzounis, Alex Kilias, Christos Mousas:
Kernel Projection of Latent Structures Regression for Facial Animation Retargeting. CoRR abs/1707.09629 (2017)

Coauthor Index

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