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Journal of Biomedical Semantics, Volume 2 - Supplement
Volume 2, Number S-1, March 2011
- Andrea Splendiani, Albert Burger, Adrian Paschke, Paolo Romano, M. Scott Marshall:
Biomedical semantics in the Semantic Web. S1 - Ernesto Jiménez-Ruiz, Bernardo Cuenca Grau, Ian Horrocks, Rafael Berlanga Llavori:
Logic-based assessment of the compatibility of UMLS ontology sources. S2 - Syed Hamid Tirmizi, Stuart Aitken, Dilvan A. Moreira, Chris Mungall, Juan F. Sequeda, Nigam H. Shah, Daniel P. Miranker:
Mapping between the OBO and OWL ontology languages. S3 - Hammad Afzal, James M. Eales, Robert Stevens, Goran Nenadic:
Mining semantic networks of bioinformatics e-resources from the literature. S4 - Anna-Lena Lamprecht, Stefan Naujokat, Tiziana Margaria, Bernhard Steffen:
Semantics-based composition of EMBOSS services. S5 - Egon L. Willighagen, Jonathan Alvarsson, Annsofie Andersson, Martin Eklund, Samuel Lampa, Maris Lapins, Ola Spjuth, Jarl E. S. Wikberg:
Linking the Resource Description Framework to cheminformatics and proteochemometrics. S6
Volume 2, Number S-2, May 2011
- Larisa N. Soldatova, Susanna-Assunta Sansone, Susie Stephens, Nigam H. Shah:
Selected papers from the 13th Annual Bio-Ontologies Special Interest Group Meeting. I1 - Joanne S. Luciano, Bosse Andersson, Colin R. Batchelor, Olivier Bodenreider, Tim Clark, Christine K. Denney, Christopher Domarew, Thomas Gambet, Lee Harland, Anja Jentzsch, Vipul Kashyap, Peter J. Kos, Julia Kozlovsky, Timothy Lebo, M. Scott Marshall, Jamie P. McCusker, Deborah L. McGuinness, Chimezie Ogbuji, Elgar Pichler, Robert L. Powers, Eric Prud'hommeaux, Matthias Samwald, Lynn M. Schriml, Peter J. Tonellato, Patricia L. Whetzel, Jun Zhao, Susie Stephens, Michel Dumontier:
The Translational Medicine Ontology and Knowledge Base: driving personalized medicine by bridging the gap between bench and bedside. S1 - Amir Ghazvinian, Natalya Fridman Noy, Mark A. Musen:
How orthogonal are the OBO Foundry ontologies? S2 - Alison Callahan, Michel Dumontier, Nigam H. Shah:
HyQue: evaluating hypotheses using Semantic Web technologies. S3 - Paolo Ciccarese, Marco Ocana, Leyla Jael García Castro, Sudeshna Das, Tim Clark:
An open annotation ontology for science on web 3.0. S4 - Robert Stevens, James Malone, Sandra Williams, Richard Power, Allan Third:
Automating generation of textual class definitions from OWL to English. S5 - Stefan Schulz, Kent A. Spackman, Andrew G. James, Cristian Cocos, Martin Boeker:
Scalable representations of diseases in biomedical ontologies. S6 - Simon Jupp, Julie Klein, Joost Schanstra, Robert Stevens:
Developing a kidney and urinary pathway knowledge base. S7 - Arzucan Özgür, Zuoshuang Xiang, Dragomir R. Radev, Yongqun He:
Mining of vaccine-associated IFN-γ gene interaction networks using the Vaccine Ontology. S8 - Larisa N. Soldatova, Andrey Rzhetsky:
Representation of research hypotheses. S9 - Adrien Coulet, Yael Garten, Michel Dumontier, Russ B. Altman, Mark A. Musen, Nigam H. Shah:
Integration and publication of heterogeneous text-mined relationships on the Semantic Web. S10
Volume 2, Number S-3, July 2011
- Hercules Dalianis, Martin Hassel, Sumithra Velupillai:
Louhi 2010: Special issue on Text and Data Mining of Health Documents. I1 - Helen Allvin, Elin Carlsson, Hercules Dalianis, Riitta Danielsson-Ojala, Vidas Daudaravicius, Martin Hassel, Dimitrios Kokkinakis, Heljä Lundgrén-Laine, Gunnar H. Nilsson, Øystein Nytrø, Sanna Salanterä, Maria Skeppstedt, Hanna Suominen, Sumithra Velupillai:
Characteristics of Finnish and Swedish intensive care nursing narratives: a comparative analysis to support the development of clinical language technologies. S1 - Scott R. Halgrim, Fei Xia, Imre Solti, Eithon Cadag, Özlem Uzuner:
A cascade of classifiers for extracting medication information from discharge summaries. S2 - Maria Skeppstedt:
Negation detection in Swedish clinical text: An adaption of NegEx to Swedish. S3 - Karin Heppin:
MedEval - A Swedish medical test collection with doctors and patients user groups. S4 - Melanie J. Martin:
Reliability and type of consumer health documents on the World Wide Web: an annotation study. S5
Volume 2, Number S-4, August 2011
- Heinrich Herre, Robert Hoehndorf, Janet Kelso, Frank Loebe, Stefan Schulz:
OBML - Ontologies in Biomedicine and Life Sciences. I1 - Alexandr Uciteli, Silvia Groß, Sergej Kireyev, Heinrich Herre:
An ontologically founded architecture for information systems in clinical and epidemiological research. S1 - Ludger Jansen, Stefan Schulz:
Grains, components and mixtures in biomedical ontologies. S2 - Ravensara S. Travillian, Tomasz Adamusiak, Tony Burdett, Michael Gruenberger, John M. Hancock, Ann-Marie Mallon, James Malone, Paul N. Schofield, Helen E. Parkinson:
Anatomy ontologies and potential users: bridging the gap. S3 - Johannes Röhl, Ludger Jansen:
Representing dispositions. S4
Volume 2, Number S-5, October 2011
- Dietrich Rebholz-Schuhmann, Fabio Rinaldi, Sampo Pyysalo, Nigel Collier, Udo Hahn:
Towards mature use of semantic resources for biomedical analyses. I1 - Robert Hoehndorf, Axel-Cyrille Ngonga Ngomo
, Sampo Pyysalo, Tomoko Ohta, Anika Oellrich, Dietrich Rebholz-Schuhmann:
Ontology design patterns to disambiguate relations between genes and gene products in GENIA. S1 - Tomoko Ohta, Sampo Pyysalo, Makoto Miwa, Jun'ichi Tsujii:
Event extraction for DNA methylation. S2 - Jung-Jae Kim, Dietrich Rebholz-Schuhmann:
Improving the extraction of complex regulatory events from scientific text by using ontology-based inference. S3 - Asma Ben Abacha, Pierre Zweigenbaum:
Automatic extraction of semantic relations between medical entities: a rule based approach. S4 - Sampo Pyysalo, Tomoko Ohta, Jun'ichi Tsujii:
An analysis of gene/protein associations at PubMed scale. S5 - Katsumasa Yoshikawa, Sebastian Riedel, Tsutomu Hirao, Masayuki Asahara, Yuji Matsumoto:
Coreference based event-argument relation extraction on biomedical text. S6 - Erik Velldal:
Predicting speculation: a simple disambiguation approach to hedge detection in biomedical literature. S7 - Veronika Vincze, György Szarvas, György Móra, Tomoko Ohta, Richárd Farkas:
Linguistic scope-based and biological event-based speculation and negation annotations in the BioScope and Genia Event corpora. S8 - Nigel Collier, Nguyen Truong Son, Ngoc Mai Nguyen:
OMG U got flu? Analysis of shared health messages for bio-surveillance. S9 - Nigel Collier:
Towards cross-lingual alerting for bursty epidemic events. S10 - Dietrich Rebholz-Schuhmann, Antonio Jimeno-Yepes, Chen Li, Senay Kafkas, Ian Lewin, Ning Kang, Peter T. Corbett, David Milward, Ekaterina Buyko, Elena Beisswanger, Kerstin Hornbostel, Alexandre Kouznetsov, René Witte, Jonas B. Laurila, Christopher J. O. Baker, Cheng-Ju Kuo, Simon Clematide, Fabio Rinaldi, Richárd Farkas, György Móra, Kazuo Hara, Laura Inés Furlong, Michael Rautschka, Mariana L. Neves, Alberto D. Pascual-Montano, Qi Wei, Nigel Collier, Md. Faisal Mahbub Chowdhury, Alberto Lavelli, Rafael Berlanga Llavori, Roser Morante, Vincent Van Asch, Walter Daelemans, José Luís Marina, Erik M. van Mulligen, Jan A. Kors, Udo Hahn:
Assessment of NER solutions against the first and second CALBC Silver Standard Corpus. S11
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