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ORCIDIsaac S. Kohane
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- affiliation: Harvard Medical School, Boston, MA, USA
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2020 – today
- 2024
[i10]Amelia L. M. Tan, Rafael S. Gonçalves
, William Yuan, Gabriel A. Brat, The Consortium for Clinical Characterization of COVID-19 by EHR, Robert Gentleman, Isaac S. Kohane:
Implications of mappings between ICD clinical diagnosis codes and Human Phenotype Ontology terms. CoRR abs/2407.08874 (2024)- [i9]Isaac S. Kohane:
Systematic Characterization of the Effectiveness of Alignment in Large Language Models for Categorical Decisions. CoRR abs/2409.18995 (2024) - 2023
- [c83]Matthew B. A. McDermott, Bret Nestor, Peniel N. Argaw, Isaac S. Kohane:
Event Stream GPT: A Data Pre-processing and Modeling Library for Generative, Pre-trained Transformers over Continuous-time Sequences of Complex Events. NeurIPS 2023 - [i8]Matthew B. A. McDermott, Bret Nestor, Peniel N. Argaw, Isaac S. Kohane:
Event Stream GPT: A Data Pre-processing and Modeling Library for Generative, Pre-trained Transformers over Continuous-time Sequences of Complex Events. CoRR abs/2306.11547 (2023) - 2022
- [j91]Alba Gutiérrez-Sacristán, Carlos Sáez, Carlos De Niz, Niloofar Jalali, Thomas N. Desain, Ranjay Kumar, Joany M. Zachariasse, Kathe P. Fox, Nathan P. Palmer, Isaac S. Kohane, Paul Avillach:
Multi-PheWAS intersection approach to identify sex differences across comorbidities in 59 140 pediatric patients with autism spectrum disorder. J. Am. Medical Informatics Assoc. 29(2): 230-238 (2022) - [j90]Vladimir I. Valtchinov, Shawn N. Murphy, Ronilda Lacson, Nikolay Ikonomov, Bingxue K. Zhai, Katherine P. Andriole, Justin F. Rousseau, Dick Hanson, Isaac S. Kohane, Ramin Khorasani:
Analytics to monitor local impact of the Protecting Access to Medicare Act's imaging clinical decision support requirements. J. Am. Medical Informatics Assoc. 29(11): 1870-1878 (2022) - [j89]Xuan Wang, Harrison G. Zhang, Xin Xiong, Chuan Hong, Griffin M. Weber, Gabriel A. Brat, Clara-Lea Bonzel, Yuan Luo, Rui Duan, Nathan P. Palmer, Meghan R. Hutch, Alba Gutiérrez-Sacristán, Riccardo Bellazzi, Luca Chiovato, Kelly Cho, Arianna Dagliati, Hossein Estiri, Noelia García-Barrio, Romain Griffier, David A. Hanauer, Yuk-Lam Ho, John H. Holmes, Mark S. Keller, Jeffrey G. Klann, Sehi L'Yi, Sara Lozano-Zahonero, Sarah E. Maidlow, Adeline Makoudjou, Alberto Malovini, Bertrand Moal, Jason H. Moore, Michele Morris, Danielle L. Mowery, Shawn N. Murphy, Antoine Neuraz, Kee Yuan Ngiam, Gilbert S. Omenn, Lav P. Patel, Miguel Pedrera-Jiménez, Andrea Prunotto, Malarkodi J. Samayamuthu, Fernando J. Sanz Vidorreta, Emily Schriver, Petra Schubert, Pablo Serrano-Balazote, Andrew M. South, Amelia L. M. Tan, Byorn W. L. Tan, Valentina Tibollo, Patric Tippmann, Shyam Visweswaran, Zongqi Xia, William Yuan, Daniela Zöller, Isaac S. Kohane, Paul Avillach, Zijian Guo, Tianxi Cai:
SurvMaximin: Robust federated approach to transporting survival risk prediction models. J. Biomed. Informatics 134: 104176 (2022) - [j88]Harrison G. Zhang, Arianna Dagliati, Zahra Shakeri Hossein Abad, Xin Xiong, Clara-Lea Bonzel, Zongqi Xia, Bryce W. Q. Tan, Paul Avillach, Gabriel A. Brat, Chuan Hong, Michele Morris, Shyam Visweswaran, Lav P. Patel, Alba Gutiérrez-Sacristán, David A. Hanauer, John H. Holmes, Malarkodi Jebathilagam Samayamuthu, Florence T. Bourgeois, Sehi L'Yi, Sarah E. Maidlow, Bertrand Moal, Shawn N. Murphy, Zachary H. Strasser, Antoine Neuraz, Kee Yuan Ngiam, Ne-Hooi Will Loh, Gilbert S. Omenn, Andrea Prunotto, Lauren A. Dalvin, Jeffrey G. Klann, Petra Schubert, Fernando J. Sanz Vidorreta, Vincent Benoit, Guillaume Verdy, Ramakanth Kavuluru, Hossein Estiri, Yuan Luo, Alberto Malovini, Valentina Tibollo, Riccardo Bellazzi, Kelly Cho, Yuk-Lam Ho, Amelia L. M. Tan, Byorn W. L. Tan, Nils Gehlenborg, Sara Lozano-Zahonero, Vianney Jouhet, Luca Chiovato, Bruce J. Aronow, Emma M. S. Toh, Wei Gen Scott Wong, Sara Pizzimenti, Kavishwar B. Wagholikar, Mauro Bucalo, Tianxi Cai, Andrew M. South, Isaac S. Kohane, Griffin M. Weber:
International electronic health record-derived post-acute sequelae profiles of COVID-19 patients. npj Digit. Medicine 5 (2022) - [c82]Miguel Pedrera-Jiménez, Noelia García-Barrio, Gema Hernandez-Ibarburu, Blanca Baselga, Alvar Javier Blanco-Martínez, Fernando Calvo-Boyero, Alba Gutiérrez-Sacristán, Víctor Quiros, Juan Luis Cruz-Bermúdez, José Luis Bernal-Sobrino, Laura Meloni, David Pérez-Rey, Matvey B. Palchuk, Isaac S. Kohane, Pablo Serrano:
Building an i2b2-Based Population Repository for COVID-19 Research. MIE 2022: 287-291 - [c81]Peniel N. Argaw, Elizabeth Healey, Isaac S. Kohane:
Identifying Heterogeneous Treatment Effects in Multiple Outcomes using Joint Confidence Intervals. ML4H@NeurIPS 2022: 141-170 - [i7]Peniel N. Argaw, Elizabeth Healey, Isaac S. Kohane:
Identifying Heterogeneous Treatment Effects in Multiple Outcomes using Joint Confidence Intervals. CoRR abs/2212.01437 (2022) - [i6]Dianbo Liu, Karmel W. Choi, Paulo Lizano, William Yuan, Kun-Hsing Yu, Jordan Smoller, Isaac S. Kohane:
Construction of extra-large scale screening tools for risks of severe mental illnesses using real world healthcare data. CoRR abs/2212.10320 (2022) - 2021
- [j87]Subha Madhavan, Lisa Bastarache, Jeffrey S. Brown, Atul J. Butte, David A. Dorr, Peter J. Embí, Charles P. Friedman, Kevin B. Johnson, Jason H. Moore, Isaac S. Kohane, Philip R. O. Payne, Jessica D. Tenenbaum, Mark G. Weiner, Adam B. Wilcox, Lucila Ohno-Machado:
Use of electronic health records to support a public health response to the COVID-19 pandemic in the United States: a perspective from 15 academic medical centers. J. Am. Medical Informatics Assoc. 28(2): 393-401 (2021) - [j86]Jeffrey G. Klann, Hossein Estiri, Griffin M. Weber, Bertrand Moal, Paul Avillach, Chuan Hong, Amelia L. M. Tan, Brett K. Beaulieu-Jones, Victor M. Castro, Thomas Maulhardt, Alon Geva, Alberto Malovini, Andrew M. South, Shyam Visweswaran, Michele Morris, Malarkodi J. Samayamuthu, Gilbert S. Omenn, Kee Yuan Ngiam, Kenneth D. Mandl, Martin Boeker, Karen L. Olson, Danielle L. Mowery, Robert W. Follett, David A. Hanauer, Riccardo Bellazzi, Jason H. Moore, Ne-Hooi Will Loh, Douglas S. Bell, Kavishwar B. Wagholikar, Luca Chiovato, Valentina Tibollo, Siegbert Rieg, Anthony L. L. J. Li, Vianney Jouhet, Emily Schriver, Zongqi Xia, Meghan Hutch, Yuan Luo, Isaac S. Kohane, Gabriel A. Brat, Shawn N. Murphy:
Validation of an internationally derived patient severity phenotype to support COVID-19 analytics from electronic health record data. J. Am. Medical Informatics Assoc. 28(7): 1411-1420 (2021) - [j85]Josephine Yates, Alba Gutiérrez-Sacristán, Vianney Jouhet, Kimberly Leblanc, Cecilia Esteves, Thomas N. Desain, Nick Benik, Jason Stedman, Nathan P. Palmer, Guillaume Mellon, Isaac S. Kohane, Paul Avillach:
Finding commonalities in rare diseases through the undiagnosed diseases network. J. Am. Medical Informatics Assoc. 28(8): 1694-1702 (2021) - [j84]William J. Gordon, Daniel Gottlieb, David A. Kreda, Joshua C. Mandel, Kenneth D. Mandl, Isaac S. Kohane:
Patient-led data sharing for clinical bioinformatics research: USCDI and beyond. J. Am. Medical Informatics Assoc. 28(10): 2298-2300 (2021) - [j83]Harrison G. Zhang, Boris P. Hejblum, Griffin M. Weber, Nathan P. Palmer, Susanne E. Churchill, Peter Szolovits, Shawn N. Murphy, Katherine P. Liao, Isaac S. Kohane, Tianxi Cai:
ATLAS: an automated association test using probabilistically linked health records with application to genetic studies. J. Am. Medical Informatics Assoc. 28(12): 2582-2592 (2021) - [j82]Brett K. Beaulieu-Jones, William Yuan, Gabriel A. Brat, Andrew L. Beam, Griffin M. Weber, Marshall Ruffin, Isaac S. Kohane:
Machine learning for patient risk stratification: standing on, or looking over, the shoulders of clinicians? npj Digit. Medicine 4 (2021) - [c80]Hadi Amiri, Mitra Mohtarami, Isaac S. Kohane:
Attentive Multiview Text Representation for Differential Diagnosis. ACL/IJCNLP (2) 2021: 1012-1019 - [c79]Samuel G. Finlayson, Matthew B. A. McDermott, Alex V. Pickering, Scott L. Lipnick, Isaac S. Kohane:
Cross-modal representation alignment of molecular structure and perturbation-induced transcriptional profiles. PSB 2021 - 2020
- [j81]Luke A. D. Hutchison, Bonnie Berger, Isaac S. Kohane:
Meta-analysis of Caenorhabditis elegans single-cell developmental data reveals multi-frequency oscillation in gene activation. Bioinform. 36(13): 4047-4057 (2020) - [j80]Kun-Hsing Yu, Feiran Wang, Gerald J. Berry, Christopher Ré, Russ B. Altman, Michael Snyder, Isaac S. Kohane:
Classifying non-small cell lung cancer types and transcriptomic subtypes using convolutional neural networks. J. Am. Medical Informatics Assoc. 27(5): 757-769 (2020) - [j79]Benjamin D. Wissel, P. J. Van Camp, Michal Kouril, Chad Weis, Tracy A. Glauser, Peter S. White, Isaac S. Kohane, Judith W. Dexheimer:
An interactive online dashboard for tracking COVID-19 in U.S. counties, cities, and states in real time. J. Am. Medical Informatics Assoc. 27(7): 1121-1125 (2020) - [j78]Inès Krissaane, Carlos De Niz, Alba Gutiérrez-Sacristán, Gabor Korodi, Nneka Ede, Ranjay Kumar, Jessica Lyons, Arjun K. Manrai, Chirag J. Patel, Isaac S. Kohane, Paul Avillach:
Scalability and cost-effectiveness analysis of whole genome-wide association studies on Google Cloud Platform and Amazon Web Services. J. Am. Medical Informatics Assoc. 27(9): 1425-1430 (2020) - [j77]Gabriel A. Brat, Griffin M. Weber, Nils Gehlenborg, Paul Avillach, Nathan P. Palmer, Luca Chiovato, James J. Cimino, Lemuel R. Waitman, Gilbert S. Omenn, Alberto Malovini, Jason H. Moore, Brett K. Beaulieu-Jones, Valentina Tibollo, Shawn N. Murphy, Sehi L'Yi, Mark S. Keller, Riccardo Bellazzi, David A. Hanauer, Arnaud Serret-Larmande, Alba Gutiérrez-Sacristán, John J. Holmes, Douglas S. Bell, Kenneth D. Mandl, Robert W. Follett, Jeffrey G. Klann, Douglas A. Murad, Luigia Scudeller, Mauro Bucalo, Katie G. Kirchoff, Jean B. Craig, Jihad S. Obeid, Vianney Jouhet, Romain Griffier, Sébastien Cossin, Bertrand Moal, Lav P. Patel, Antonio Bellasi, Hans-Ulrich Prokosch, Detlef Kraska, Piotr Sliz, Amelia L. M. Tan, Kee Yuan Ngiam, Alberto Zambelli, Danielle L. Mowery, Emily Schriver, Batsal Devkota, Robert L. Bradford, Mohamad Daniar, Christel Daniel, Vincent Benoit, Romain Bey, Nicolas Paris, Patricia Serre, Nina Orlova, Julien Dubiel, Martin Hilka, Anne-Sophie Jannot, Stéphane Bréant, Judith Leblanc, Nicolas Griffon, Anita Burgun, Mélodie Bernaux, Arnaud Sandrin, Elisa Salamanca, Sylvie Cormont, Thomas Ganslandt, Tobias Gradinger, Julien Champ, Martin Boeker, Patricia Martel, Loic Esteve, Alexandre Gramfort, Olivier Grisel, Damien Leprovost, Thomas Moreau, Gaël Varoquaux, Jill-Jênn Vie, Demian Wassermann, Arthur Mensch, Charlotte Caucheteux, Christian Haverkamp, Guillaume Lemaitre, Silvano Bosari, Ian D. Krantz, Andrew M. South, Tianxi Cai, Isaac S. Kohane:
International electronic health record-derived COVID-19 clinical course profiles: the 4CE consortium. npj Digit. Medicine 3 (2020) - [j76]Matthew B. A. McDermott, Jennifer Wang, Wen-Ning Zhao, Steven Sheridan, Peter Szolovits, Isaac S. Kohane, Stephen J. Haggarty, Roy H. Perlis:
Deep Learning Benchmarks on L1000 Gene Expression Data. IEEE ACM Trans. Comput. Biol. Bioinform. 17(6): 1846-1857 (2020) - [c78]Kun-Hsing Yu, Vincent Hu, Feiran Wang, Ursula Matulonis, George Mutter, Jeffrey Golden, Isaac S. Kohane:
Deciphering Serous Ovarian Carcinoma Histopathology and Platinum Response by Convolutional Neural Networks. AMIA 2020 - [c77]Andrew L. Beam, Benjamin Kompa, Allen Schmaltz, Inbar Fried, Griffin M. Weber, Nathan P. Palmer, Xu Shi, Tianxi Cai, Isaac S. Kohane:
Clinical Concept Embeddings Learned from Massive Sources of Multimodal Medical Data. PSB 2020: 295-306
2010 – 2019
- 2019
- [j75]Judith Somekh, Shai S. Shen-Orr, Isaac S. Kohane:
Batch correction evaluation framework using a-priori gene-gene associations: applied to the GTEx dataset. BMC Bioinform. 20(1): 268:1-268:10 (2019) - [j74]Katherine P. Liao, Jiehuan Sun, Tianrun A. Cai, Nicholas B. Link, Chuan Hong, Jie Huang, Jennifer E. Huffman, Jessica L. Gronsbell, Yichi Zhang, Yuk-Lam Ho, Victor M. Castro, Vivian S. Gainer, Shawn N. Murphy, Christopher J. O'Donnell, J. Michael Gaziano, Kelly Cho, Peter Szolovits, Isaac S. Kohane, Sheng Yu:
High-throughput multimodal automated phenotyping (MAP) with application to PheWAS. J. Am. Medical Informatics Assoc. 26(11): 1255-1262 (2019) - [j73]Wenxin Ning, Stephanie Chan, Andrew Beam, Ming Yu, Alon Geva, Katherine P. Liao, Mary Mullen, Kenneth D. Mandl, Isaac S. Kohane, Tianxi Cai, Sheng Yu:
Feature extraction for phenotyping from semantic and knowledge resources. J. Biomed. Informatics 91 (2019) - [j72]Luwan Zhang, Yichi Zhang, Tianrun A. Cai, Yuri Ahuja, Zeling He, Yuk-Lam Ho, Andrew Beam, Kelly Cho, Robert J. Carroll, Joshua C. Denny, Isaac S. Kohane, Katherine P. Liao, Tianxi Cai:
Automated grouping of medical codes via multiview banded spectral clustering. J. Biomed. Informatics 100 (2019) - [c76]Hadi Amiri, Andrew Beam, Isaac S. Kohane:
Learning to Estimate Nutrition Facts from Food Descriptions. AMIA 2019 - [c75]Kun-Hsing Yu, Feiran Wang, Gerald J. Berry, Christopher Ré, Russ B. Altman, Michael Snyder, Isaac S. Kohane:
Classifying Non-Small Cell Lung Cancer Histopathology Types and Transcriptomic Subtypes using Convolutional Neural Networks. AMIA 2019 - [c74]Brett K. Beaulieu-Jones, Isaac S. Kohane, Andrew L. Beam:
Learning Contextual Hierarchical Structure of Medical Concepts with Poincairé Embeddings to Clarify Phenotypes. PSB 2019: 8-17 - [i5]Samuel G. Finlayson, Matthew B. A. McDermott, Alex V. Pickering, Scott L. Lipnick, William Yuan, Isaac S. Kohane:
Approaching Small Molecule Prioritization as a Cross-Modal Information Retrieval Task through Coordinated Representation Learning. CoRR abs/1911.10241 (2019) - 2018
- [j71]Alba Gutiérrez-Sacristán, Romain Guedj, Gabor Korodi, Jason Stedman, Laura Inés Furlong, Chirag J. Patel, Isaac S. Kohane, Paul Avillach:
Rcupcake: an R package for querying and analyzing biomedical data through the BD2K PIC-SURE RESTful API. Bioinform. 34(8): 1431-1432 (2018) - [j70]Sheng Yu, Yumeng Ma, Jessica L. Gronsbell, Tianrun A. Cai, Ashwin N. Ananthakrishnan, Vivian S. Gainer, Susanne E. Churchill, Peter Szolovits, Shawn N. Murphy, Isaac S. Kohane, Katherine P. Liao, Tianxi Cai:
Enabling phenotypic big data with PheNorm. J. Am. Medical Informatics Assoc. 25(1): 54-60 (2018) - [j69]Jennifer A. Sinnott, Fiona Cai, Sheng Yu, Boris P. Hejblum, Chuan Hong, Isaac S. Kohane, Katherine P. Liao:
PheProb: probabilistic phenotyping using diagnosis codes to improve power for genetic association studies. J. Am. Medical Informatics Assoc. 25(10): 1359-1365 (2018) - [c73]Katherine P. Liao, Jiehuan Sun, Tianrun A. Cai, Nicholas B. Link, Chuan Hong, Jie Huang, Jennifer E. Huffman, Jessica L. Gronsbell, Lauren Costa, Victor M. Castro, Vivian S. Gainer, Shawn N. Murphy, J. Michael Gaziano, Kelly Cho, Peter Szolovits, Isaac S. Kohane, Sheng Yu, Tianxi Cai:
High-Throughput Multimodal Automated Phenotyping (MAP) Incorporating Natural Language Processing with Application to PheWAS. AMIA 2018 - [i4]Andrew L. Beam, Benjamin Kompa, Inbar Fried, Nathan P. Palmer, Xu Shi, Tianxi Cai, Isaac S. Kohane:
Clinical Concept Embeddings Learned from Massive Sources of Medical Data. CoRR abs/1804.01486 (2018) - [i3]Samuel G. Finlayson, Isaac S. Kohane, Andrew L. Beam:
Adversarial Attacks Against Medical Deep Learning Systems. CoRR abs/1804.05296 (2018) - [i2]Brett K. Beaulieu-Jones, Isaac S. Kohane, Andrew L. Beam:
Learning Contextual Hierarchical Structure of Medical Concepts with Poincairé Embeddings to Clarify Phenotypes. CoRR abs/1811.01294 (2018) - [i1]Samuel G. Finlayson, Hyunkwang Lee, Isaac S. Kohane, Luke Oakden-Rayner:
Towards generative adversarial networks as a new paradigm for radiology education. CoRR abs/1812.01547 (2018) - 2017
- [j68]Sheng Yu, Abhishek Chakrabortty, Katherine P. Liao, Tianrun A. Cai, Ashwin N. Ananthakrishnan, Vivian S. Gainer, Susanne E. Churchill, Peter Szolovits, Shawn N. Murphy, Isaac S. Kohane, Tianxi Cai:
Surrogate-assisted feature extraction for high-throughput phenotyping. J. Am. Medical Informatics Assoc. 24(e1): e143-e149 (2017) - [c72]Sheng Yu, Yumeng Ma, Jessica L. Gronsbell, Katherine P. Liao, Tianrun A. Cai, Ashwin N. Ananthakrishnan, Vivian S. Gainer, Susanne E. Churchill, Peter Szolovits, Shawn N. Murphy, Isaac S. Kohane, Tianxi Cai:
High-throughput Phenotyping via Denoised Normal Mixture Transformation. AMIA 2017 - [c71]Kun-Hsing Yu, Nathan P. Palmer, Isaac S. Kohane:
Subtype Discovery for Autism Spectrum Disorder by Comorbidity Analysis. AMIA 2017 - [c70]Shawn N. Murphy, Christopher D. Herrick, Michael Mendis, Lori C. Phillips, Wayne Chan, Alyssa J. Porter, Griffin M. Weber, Susanne E. Churchill, Isaac S. Kohane:
Creating a Patient Information Commons from Multiple Research Informatics Platforms. CRI 2017 - 2016
- [j67]Cassandra Brady, Bahram Namjou, Stephanie Kennebeck, Jonathan Bickel, Nandan Patibandla, Yizhao Ni, Sara Van Driest, Lixin Chen, Ashton Roach, Beth Cobb, Jacqueline Kirby, Joshua C. Denny, Lisa Bailey-Davis, Marc S. Williams, Keith Marsolo, Imre Solti, Ingrid A. Holm, John Harley, Isaac S. Kohane, Guergana Savova, Nancy Crimmins, Todd Lingren, Vidhu Thaker:
Developing an Algorithm to Detect Early Childhood Obesity in Two Tertiary Pediatric Medical Centers. Appl. Clin. Inform. 07(03): 693-706 (2016) - [j66]Adam S. Brown, Sek Won Kong, Isaac S. Kohane, Chirag J. Patel:
ksRepo: a generalized platform for computational drug repositioning. BMC Bioinform. 17: 78 (2016) - [j65]Jeremy L. Warner, Matthew J. Rioth, Kenneth D. Mandl, Joshua C. Mandel, David A. Kreda, Isaac S. Kohane, Daniel Carbone, Ross Oreto, Lucy Wang, Shilin Zhu, Heming Yao, Gil Alterovitz:
SMART precision cancer medicine: a FHIR-based app to provide genomic information at the point of care. J. Am. Medical Informatics Assoc. 23(4): 701-710 (2016) - [j64]Joshua C. Mandel, David A. Kreda, Kenneth D. Mandl, Isaac S. Kohane, Rachel B. Ramoni:
SMART on FHIR: a standards-based, interoperable apps platform for electronic health records. J. Am. Medical Informatics Assoc. 23(5): 899-908 (2016) - [j63]Judith Somekh, Mor Peleg, Alal Eran, Itay Koren, Ariel Feiglin, Alik Demishtein, Ruth Shiloh, Monika Heiner, Sek Won Kong, Zvulun Elazar, Isaac S. Kohane:
A model-driven methodology for exploring complex disease comorbidities applied to autism spectrum disorder and inflammatory bowel disease. J. Biomed. Informatics 63: 366-378 (2016) - [c69]Uri Kartoun, Andrew Beam, Jennifer Pai, Arnaub Chatterjee, Timothy P. Fitzgerald, Isaac S. Kohane, Stanley Y. Shaw:
The Spectrum of Insomnia-Associated Comorbidities in an Electronic Medical Records Cohort. AMIA 2016 - [c68]Efrat Muller, Alal Eran, Denis Agniel, Isaac S. Kohane, Eitan Bachmat:
Characterizing the Fever Effect in Autism Spectrum Disorder. AMIA 2016 - [c67]Arjun K. Manrai, Chirag J. Patel, Nils Gehlenborg, Nicholas P. Tatonetti, John P. A. Ioannidis, Isaac S. Kohane:
Session Introduction. PSB 2016: 180-182 - [c66]Arjun K. Manrai, Brice L. Wang, Chirag J. Patel, Isaac S. Kohane:
Reproducible and Shareable Quantifications of Pathogenicity. PSB 2016: 231-242 - 2015
- [j62]Sheng Yu, Katherine P. Liao, Stanley Y. Shaw, Vivian S. Gainer, Susanne E. Churchill, Peter Szolovits, Shawn N. Murphy, Isaac S. Kohane, Tianxi Cai:
Toward high-throughput phenotyping: unbiased automated feature extraction and selection from knowledge sources. J. Am. Medical Informatics Assoc. 22(5): 993-1000 (2015) - [j61]Gil Alterovitz, Jeremy L. Warner, Peijin Zhang, Yishen Chen, Mollie Ullman-Cullere, David A. Kreda, Isaac S. Kohane:
SMART on FHIR Genomics: facilitating standardized clinico-genomic apps. J. Am. Medical Informatics Assoc. 22(6): 1173-1178 (2015) - [j60]Yizhao Ni, Jordan Wright, John Perentesis, Todd Lingren, Louise Deléger, Megan Kaiser, Isaac S. Kohane, Imre Solti:
Increasing the efficiency of trial-patient matching: automated clinical trial eligibility Pre-screening for pediatric oncology patients. BMC Medical Informatics Decis. Mak. 15: 28 (2015) - [c65]Uri Kartoun, Vishesh Kumar, Su-Chun Cheng, Sheng Yu, Katherine P. Liao, Elizabeth W. Karlson, Ashwin N. Ananthakrishnan, Zongqi Xia, Vivian S. Gainer, Andrew Cagan, Guergana Savova, Pei J. Chen, Shawn N. Murphy, Susanne E. Churchill, Isaac S. Kohane, Peter Szolovits, Tianxi Cai, Stanley Y. Shaw:
Demonstrating the Advantages of Applying Data Mining Techniques on Time-Dependent Electronic Medical Records. AMIA 2015 - 2014
- [j59]Kenneth D. Mandl, Isaac S. Kohane, Douglas McFadden, Griffin M. Weber, Marc D. Natter, Joshua C. Mandel, Sebastian Schneeweiss, Sarah Weiler, Jeffrey G. Klann, Jonathan P. Bickel, William G. Adams, Yaorong Ge, Xiaobo Zhou, James Perkins, Keith Marsolo, Elmer V. Bernstam, John Showalter, Alexander Quarshie, Elizabeth O. Ofili, George Hripcsak, Shawn N. Murphy:
Brief communication: Scalable Collaborative Infrastructure for a Learning Healthcare System (SCILHS): Architecture. J. Am. Medical Informatics Assoc. 21(4): 615-620 (2014) - [j58]John D. D'Amore, Joshua C. Mandel, David A. Kreda, Ashley Swain, George A. Koromia, Sumesh Sundareswaran, Liora Alschuler, Robert H. Dolin, Kenneth D. Mandl, Isaac S. Kohane, Rachel B. Ramoni:
Are Meaningful Use Stage 2 certified EHRs ready for interoperability? Findings from the SMART C-CDA Collaborative. J. Am. Medical Informatics Assoc. 21(6): 1060-1068 (2014) - [c64]David McCallie, Joshua C. Mandel, Stanley M. Huff, Kenneth D. Mandl, Isaac S. Kohane:
Smart on FHIR. AMIA 2014 - [c63]Shawn N. Murphy, Nich Wattanasin, Susanne E. Churchill, Isaac S. Kohane, Vivian S. Gainer:
Informatics for Integrating Biology and the Bedside (I2b2) Clinical Trials (CT) Patient Ascertainment Suite. AMIA 2014 - [c62]Nich Wattanasin, Michael Mendis, Kenneth D. Mandl, Isaac S. Kohane, Shawn N. Murphy:
Improving the Review of Individual Patients in a Clinical Data Repository. AMIA 2014 - [c61]Marc Olano, Alan T. Sherman, Linda Oliva, Ryan Cox, Deborah Firestone, Oliver Kubik, Milind Patil, John Seymour, Isaac S. Kohane, Donna Thomas:
SecurityEmpire: Development and Evaluation of a Digital Game to Promote Cybersecurity Education. 3GSE 2014 - 2013
- [j57]Eugene Kolker, Vural Özdemir, Lennart Martens, William Hancock, Gordon A. Anderson, Nathaniel Anderson, Sukru Aynacioglu, Ancha V. Baranova, Shawn R. Campagna, Rui Chen, John Choiniere, Stephen P. Dearth, Wu-Chun Feng, Lynnette Ferguson, Geoffrey C. Fox, Dmitrij Frishman, Robert Grossman, Allison P. Heath, Roger Higdon, Mara H. Hutz, Imre Janko, Lihua Jiang, Sanjay Joshi, Alexander E. Kel, Joseph W. Kemnitz, Isaac S. Kohane, Natali Kolker, Doron Lancet, Elaine Lee, Weizhong Li, Andrey Lisitsa, Adrian Llerena, Courtney MacNealy-Koch, Jean-Claude Marshall, Paola Masuzzo, Amanda May, George Mias, Matthew E. Monroe, Elizabeth Montague, Sean D. Mooney, Alexey I. Nesvizhskii, Santosh Noronha, Gilbert S. Omenn, Harsha Rajasimha, Preveen Ramamoorthy, Jerry Sheehan, Larry Smarr, Charles V. Smith, Todd Smith, Michael Snyder, Srikanth Rapole, Sanjeeva Srivastava, Larissa Stanberry, Elizabeth Stewart, Stefano Toppo, Peter Uetz, Kenneth Verheggen, Brynn H. Voy, Louise Warnich, Steven W. Wilhelm, Gregory Yandl:
Toward More Transparent and Reproducible Omics Studies Through a Common Metadata Checklist and Data Publications. Big Data 1(4): 196-201 (2013) - [j56]Andrew J. McMurry, Britt Fitch, Guergana Savova, Isaac S. Kohane, Ben Y. Reis:
Improved de-identification of physician notes through integrative modeling of both public and private medical text. BMC Medical Informatics Decis. Mak. 13: 112 (2013) - [c60]Lori C. Phillips, Shawn N. Murphy, Isaac S. Kohane:
Organization and Transformation of Next-Generation Sequencing Data for Use within i2b2. AMIA 2013 - [c59]Nich Wattanasin, Michael Mendis, Joshua C. Mandel, Rachel B. Ramoni, Kenneth D. Mandl, Isaac S. Kohane, Shawn N. Murphy:
Integrating the CCDA for Real-Time Patient Data in the i2b2 Platform. AMIA 2013 - 2012
- [j55]Isaac S. Kohane, Vladimir I. Valtchinov:
Quantifying the white blood cell transcriptome as an accessible window to the multiorgan transcriptome. Bioinform. 28(4): 538-545 (2012) - [j54]Isaac S. Kohane, Vladimir I. Valtchinov:
Quantifying the white blood cell transcriptome as an accessible window to the multiorgan transcriptome. Bioinform. 28(6): 905 (2012) - [j53]Isaac S. Kohane, Susanne E. Churchill, Shawn N. Murphy:
A translational engine at the national scale: informatics for integrating biology and the bedside. J. Am. Medical Informatics Assoc. 19(2): 181-185 (2012) - [j52]Kenneth D. Mandl, Joshua C. Mandel, Shawn N. Murphy, Elmer V. Bernstam, Rachel L. Ramoni, David A. Kreda, J. Michael McCoy, Ben Adida, Isaac S. Kohane:
The SMART Platform: early experience enabling substitutable applications for electronic health records. J. Am. Medical Informatics Assoc. 19(4): 597-603 (2012) - [j51]Daniel R. Masys, Gail P. Jarvik, Neil F. Abernethy, Nicholas R. Anderson, George J. Papanicolaou, Dina N. Paltoo, Mark A. Hoffman, Isaac S. Kohane, Howard P. Levy:
Technical desiderata for the integration of genomic data into Electronic Health Records. J. Biomed. Informatics 45(3): 419-422 (2012) - [j50]Patrick R. Schmid, Nathan P. Palmer, Isaac S. Kohane, Bonnie Berger:
Making sense out of massive data by going beyond differential expression. Proc. Natl. Acad. Sci. USA 109(15): 5594-5599 (2012) - [c58]Shawn N. Murphy, Michael Mendis, Nich Wattanasin, Alyssa Porter, Stella Ubaha, Lori C. Phillips, Joshua C. Mandel, Rachel L. Ramoni, Kenneth D. Mandl, Isaac S. Kohane:
Supporting Population Queries and Clinical Trials in i2b2 with SMART. AMIA 2012 - [c57]Nich Wattanasin, Alyssa Porter, Stella Ubaha, Michael Mendis, Lori C. Phillips, Joshua C. Mandel, Rachel L. Ramoni, Kenneth D. Mandl, Isaac S. Kohane, Shawn N. Murphy:
Apps to display patient data, making SMART available in the i2b2 platform. AMIA 2012 - [c56]Nich Wattanasin, Alyssa Porter, Stella Ubaha, Michael Mendis, Lori C. Phillips, Joshua C. Mandel, Rachel L. Ramoni, Kenneth D. Mandl, Isaac S. Kohane, Shawn N. Murphy:
Integrating Substitutable Medical Apps, Reusable Technologies (SMART) in the i2b2 Platform. AMIA 2012 - 2011
- [j49]Mark Y. Tong, Christopher A. Cassa, Isaac S. Kohane:
Automated validation of genetic variants from large databases: ensuring that variant references refer to the same genomic locations. Bioinform. 27(6): 891-893 (2011) - [j48]Shashank Agarwal, Hong Yu, Isaac S. Kohane:
BioNOT: A searchable database of biomedical negated sentences. BMC Bioinform. 12: 420 (2011) - [j47]Isaac S. Kohane, Peter Szolovits:
Marco Ramoni: an appreciation of academic achievement. J. Am. Medical Informatics Assoc. 18(4): 367-369 (2011) - [j46]Shawn N. Murphy, Vivian S. Gainer, Michael Mendis, Susanne E. Churchill, Isaac S. Kohane:
Strategies for maintaining patient privacy in i2b2. J. Am. Medical Informatics Assoc. 18(Supplement): 103-108 (2011) - [j45]Fulvia Ferrazzi, Felix B. Engel, Erxi Wu, Annie P. Moseman, Isaac S. Kohane, Riccardo Bellazzi, Marco Ramoni:
Inferring cell cycle feedback regulation from gene expression data. J. Biomed. Informatics 44(4): 565-575 (2011) - [j44]Susan L. Graham, Deborah Estrin, Eric Horvitz, Isaac S. Kohane, Elizabeth D. Mynatt, Ida Sim:
Information Technology research challenges for healthcare: from discovery to delivery. SIGHIT Rec. 1(1): 4-9 (2011) - 2010
- [j43]Jong-Min Lee, Jie Zhang, Andrew I. Su, John R. Walker, Tim Wiltshire, Kihwa Kang, Ella Dragileva, Tammy Gillis, Edith T. Lopez, Marie-Josee Boily, Michel Cyr, Isaac S. Kohane, James F. Gusella, Marcy E. MacDonald, Vanessa C. Wheeler:
A novel approach to investigate tissue-specific trinucleotide repeat instability. BMC Syst. Biol. 4: 29 (2010) - [j42]Shawn N. Murphy, Griffin M. Weber, Michael Mendis, Vivian S. Gainer, Henry C. Chueh, Susanne E. Churchill, Isaac S. Kohane:
Serving the enterprise and beyond with informatics for integrating biology and the bedside (i2b2). J. Am. Medical Informatics Assoc. 17(2): 124-130 (2010) - [c55]Ben Adida, Isaac S. Kohane, Kenneth D. Mandl:
Practical Health Information Exchange using a Personally Controlled Health Record. HealthSec 2010
2000 – 2009
- 2009
- [j41]Peter J. Park, Sek Won Kong, Toma Tebaldi, Weil R. Lai, Simon Kasif, Isaac S. Kohane:
Integration of heterogeneous expression data sets extends the role of the retinol pathway in diabetes and insulin resistance. Bioinform. 25(23): 3121-3127 (2009) - [j40]Blanca E. Himes, Yi Dai, Isaac S. Kohane, Scott T. Weiss, Marco Ramoni:
Research Paper: Prediction of Chronic Obstructive Pulmonary Disease (COPD) in Asthma Patients Using Electronic Medical Records. J. Am. Medical Informatics Assoc. 16(3): 371-379 (2009) - [j39]Griffin M. Weber, Shawn N. Murphy, Andrew J. McMurry, Douglas MacFadden, Daniel J. Nigrin, Susanne E. Churchill, Isaac S. Kohane:
Application of Information Technology: The Shared Health Research Information Network (SHRINE): A Prototype Federated Query Tool for Clinical Data Repositories. J. Am. Medical Informatics Assoc. 16(5): 624-630 (2009) - [c54]m. c. schraefel, Paul André, Ryen White, Desney S. Tan, Tim Berners-Lee, Sunny Consolvo, Robert Jacobs, Isaac S. Kohane, Christopher A. Le Dantec, Lena Mamykina, Gary Marsden, Ben Shneiderman, Peter Szolovits, Daniel J. Weitzner:
Interacting with eHealth: towards grand challenges for HCI. CHI Extended Abstracts 2009: 3309-3312 - 2008
- [j38]Özlem Uzuner, Ira Goldstein, Yuan Luo, Isaac S. Kohane:
Viewpoint Paper: Identifying Patient Smoking Status from Medical Discharge Records. J. Am. Medical Informatics Assoc. 15(1): 14-24 (2008) - [j37]Isaac S. Kohane, Özlem Uzuner:
Letters to the Editor: No Structure Before Its Time. J. Am. Medical Informatics Assoc. 15(5): 708 (2008) - [c53]Blanca E. Himes, Isaac S. Kohane, Marco Ramoni, Scott T. Weiss:
Characterization of Patients who Suffer Asthma Exacerbations using Data Extracted from Electronic Medical Records. AMIA 2008 - 2007
- [j36]Andrew J. McMurry, Clint A. Gilbert, Ben Y. Reis, Henry C. Chueh, Isaac S. Kohane, Kenneth D. Mandl:
Model Formulation: A Self-scaling, Distributed Information Architecture for Public Health, Research, and Clinical Care. J. Am. Medical Informatics Assoc. 14(4): 527-533 (2007) - [c52]Shawn N. Murphy, Michael Mendis, Kristel Hackett, Rajesh Kuttan, Wensong Pan, Lori C. Phillips, Vivian S. Gainer, David Berkowicz, John P. Glaser, Isaac S. Kohane, Henry C. Chueh:
Architecture of the Open-source Clinical Research Chart from Informatics for Integrating Biology and the Bedside. AMIA 2007 - 2006
- [j35]Voichita D. Marinescu, Isaac S. Kohane, Tae-Kyung Kim, David A. Harmin, Michael E. Greenberg, Alberto Riva:
START: an automated tool for serial analysis of chromatin occupancy data. Bioinform. 22(8): 999-1001 (2006) - [j34]Hidenori Inaoka, Yutaka Fukuoka, Isaac S. Kohane:
Lower expression of genes near microRNA in C. elegans germline. BMC Bioinform. 7: 112 (2006) - [c51]Kristel Hackett, Isaac S. Kohane, Henry C. Chueh, Shawn N. Murphy:
Mapping Tool for Maintaining Vocabulary Relationships. AMIA 2006 - [c50]Shawn N. Murphy, Michael Mendis, David A. Berkowitz, Isaac S. Kohane, Henry C. Chueh:
Integration of Clinical and Genetic Data in the i2b2 Architecture. AMIA 2006 - [c49]William W. Simons, John D. Halamka, Isaac S. Kohane, Daniel J. Nigrin, Nathan Finstein, Kenneth D. Mandl:
Integration of the Personally Controlled Electronic Medical Record into a Regional and Data Exchange: A National Demonstration. AMIA 2006 - [c48]Fulvia Ferrazzi, Paola Sebastiani, Isaac S. Kohane, Marco Ramoni, Riccardo Bellazzi:
Dynamic Bayesian Networks in Modelling Cellular Systems: a Critical Appraisal on Simulated Data. CBMS 2006: 544-549 - 2005
- [j33]Sek Won Kong, Kyu Baek Hwang, Richard D. Kim, Byoung-Tak Zhang, Steven A. Greenberg, Isaac S. Kohane, Peter J. Park:
CrossChip: a system supporting comparative analysis of different generations of Affymetrix arrays. Bioinform. 21(9): 2116-2117 (2005) - [j32]Voichita D. Marinescu, Isaac S. Kohane, Alberto Riva:
MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes. BMC Bioinform. 6: 79 (2005) - [j31]Scott L. Carter, Aron C. Eklund, Brigham H. Mecham, Isaac S. Kohane, Zoltan Szallasi:
Redefinition of Affymetrix probe sets by sequence overlap with cDNA microarray probes reduces cross-platform inconsistencies in cancer-associated gene expression measurements. BMC Bioinform. 6: 107 (2005) - [j30]Cecily J. Wolfe, Isaac S. Kohane, Atul J. Butte:
Systematic survey reveals general applicability of "guilt-by-association" within gene coexpression networks. BMC Bioinform. 6: 227 (2005) - [j29]William W. Simons, Kenneth D. Mandl, Isaac S. Kohane:
Model Formulation: The PING Personally Controlled Electronic Medical Record System: Technical Architecture. J. Am. Medical Informatics Assoc. 12(1): 47-54 (2005) - [j28]Ulrich Sax, Isaac S. Kohane, Kenneth D. Mandl:
Position Paper: Wireless Technology Infrastructures for Authentication of Patients: PKI that Rings. J. Am. Medical Informatics Assoc. 12(3): 263-268 (2005) - [j27]Stephen C. Porter, Isaac S. Kohane, Donald A. Goldmann:
Research Paper: Parents as Partners in Obtaining the Medication History. J. Am. Medical Informatics Assoc. 12(3): 299-305 (2005) - [j26]Voichita D. Marinescu, Isaac S. Kohane, Alberto Riva:
The MAPPER database: a multi-genome catalog of putative transcription factor binding sites. Nucleic Acids Res. 33(Database-Issue): 91-97 (2005) - [c47]John S. Brownstein, Christopher A. Cassa, Isaac S. Kohane, Kenneth D. Mandl:
Reverse Geocoding: Concerns about Patient Confidentiality in the Display of Geospatial Health Data. AMIA 2005 - [c46]Alexander Turchin, Merri L. Pendergrass, Isaac S. Kohane:
DITTO - a Tool for Identification of Patient Cohorts from the Text of Physician Notes in the Electronic Medical Record. AMIA 2005 - 2004
- [j25]Dominic J. Allocco, Isaac S. Kohane, Atul J. Butte:
Quantifying the relationship between co-expression, co-regulation and gene function. BMC Bioinform. 5: 18 (2004) - [j24]Alberto Riva, Isaac S. Kohane:
A SNP-centric database for the investigation of the human genome. BMC Bioinform. 5: 33 (2004) - [j23]Charles P. Friedman, Russ B. Altman, Isaac S. Kohane, Kathleen A. McCormick, Perry L. Miller, Judy G. Ozbolt, Edward H. Shortliffe, Gary D. Stormo, M. Cleat Szczepaniak, David Tuck, Jeffrey J. Williamson:
White Paper: Training the Next Generation of Informaticians: The Impact of "BISTI" and Bioinformatics - A Report from the American College of Medical Informatics. J. Am. Medical Informatics Assoc. 11(3): 167-172 (2004) - [j22]Stephen C. Porter, Zhaohui Cai, William Gribbons, Donald A. Goldmann, Isaac S. Kohane:
Application of Information Technology: The Asthma Kiosk: A Patient-centered Technology for Collaborative Decision Support in the Emergency Department. J. Am. Medical Informatics Assoc. 11(6): 458-467 (2004) - [c45]Ahmad H. Namini, David A. Berkowicz, Isaac S. Kohane, Henry Chueh:
A Submission Model for Use in the Indexing, Searching, and Retrieval of Distributed Pathology Case and Tissue Specimens. MedInfo 2004: 1264-1267 - 2003
- [j21]Kyungjoon Lee, Isaac S. Kohane, Atul J. Butte:
PGAGENE: integrating quantitative gene-specific results from the NHLBI Programs for Genomic Applications. Bioinform. 19(6): 778-779 (2003) - [j20]Ashish Nimgaonkar, Despina Sanoudou, Atul J. Butte, Judith N. Haslett, Louis M. Kunkel, Alan H. Beggs, Isaac S. Kohane:
Reproducibility of gene expression across generations of Affymetrix microarrays. BMC Bioinform. 4: 27 (2003) - [j19]Paola Sebastiani, Isaac S. Kohane, Marco Ramoni:
Editorial: Methods in Functional Genomics. Mach. Learn. 52(1-2): 5-9 (2003) - [c44]Sunil Saluja, Isaac S. Kohane:
Localization and Characterization of Mouse-Human Alignments Within the Human Genome. Does Evolutionary Conservation Suggest Functional Importance? AMIA 2003 - [c43]Francisco M. de la Vega, Kenneth K. Kidd, Isaac S. Kohane:
Human Genome Variation: Haplotypes, Linkage Disequilibrium, and Populations - Session Introduction. Pacific Symposium on Biocomputing 2003: 463-465 - 2002
- [j18]Winston Patrick Kuo, Tor-Kristian Jenssen, Atul J. Butte, Lucila Ohno-Machado, Isaac S. Kohane:
Analysis of matched mRNA measurements from two different microarray technologies. Bioinform. 18(3): 405-412 (2002) - [j17]Peter J. Park, Atul J. Butte, Isaac S. Kohane:
Comparing expression profiles of genes with similar promoter regions. Bioinform. 18(12): 1576-1584 (2002) - [j16]Alberto Riva, Isaac S. Kohane:
SNPper: retrieval and analysis of human SNPs. Bioinform. 18(12): 1681-1685 (2002) - [j15]Isaac S. Kohane:
Brief Review: The Contributions of Biomedical Informatics to the Fight Against Bioterrorism. J. Am. Medical Informatics Assoc. 9(2): 116-119 (2002) - [j14]Ju-Han Kim, Isaac S. Kohane, Lucila Ohno-Machado:
Visualization and evaluation of clusters for exploratory analysis of gene expression data. J. Biomed. Informatics 35(1): 25-36 (2002) - [c42]Zhaohui Cai, Isaac S. Kohane, Gary R. Fleisher, David S. Greenes:
Computerized reminders to physicians in the emergency department: a web-based system to report late-arriving abnormal laboratory results. AMIA 2002 - [c41]Matvey B. Palchuk, Eric C. Pan, Isaac S. Kohane:
Maximizing Data Portability in Patient-controlled Longitudinal Medical Records. AMIA 2002 - [c40]Eric C. Pan, Isaac S. Kohane, Kenneth D. Mandl:
Patient-controlled Pediatric Immunization Records. AMIA 2002 - [c39]Alberto Riva, Isaac S. Kohane:
Accessing genomic data through XML-based remote procedure calls. AMIA 2002 - [c38]Asher D. Schachter, Isaac S. Kohane:
An unsupervised self-optimizing gene clustering algorithm. AMIA 2002 - [c37]Christine L. Tsien, T. A. Libermann, X. Gu, A. Kho, Isaac S. Kohane:
CHIP TUNER: a web tool for evidence-based noise reduction in gene discovery. AMIA 2002 - [c36]Peter J. Park, Lu Tian, Isaac S. Kohane:
Linking gene expression data with patient survival times using partial least squares. ISMB 2002: 120-127 - [c35]Francisco M. de la Vega, Isaac S. Kohane, Julie A. Schneider, J. Claiborne Stephens:
Human Genome Variation: Disease, Drug Response, and Clinical Phenotypes - Session Introduction. Pacific Symposium on Biocomputing 2002: 3-5 - 2001
- [j13]Alberto Riva, Kenneth D. Mandl, Do Hoon Oh, Daniel J. Nigrin, Atul J. Butte, Peter Szolovits, Isaac S. Kohane:
The Personal Internetworked Notary and Guardian. Int. J. Medical Informatics 62(1): 27-40 (2001) - [j12]Ben Y. Reis, Atul J. Butte, Isaac S. Kohane:
Extracting Knowledge from Dynamics in Gene Expression. J. Biomed. Informatics 34(1): 15-27 (2001) - [j11]Ben Y. Reis, Atul J. Butte, Isaac S. Kohane:
Reply. J. Biomed. Informatics 34(4): 299-300 (2001) - [j10]Atul J. Butte, Ling Bao, Ben Y. Reis, Timothy W. Watkins, Isaac S. Kohane:
Comparing the Similarity of Time-Series Gene Expression Using Signal Processing Metrics. J. Biomed. Informatics 34(6): 396-405 (2001) - [c34]Alberto Riva, Isaac S. Kohane:
A web-based tool to retrieve human genome polymorphisms from public databases. AMIA 2001 - [c33]Christine L. Tsien, Isaac S. Kohane, Neil McIntosh:
Building ICU artifact detection models with more data in less time. AMIA 2001 - [c32]Kwonmoo Lee, Ju Han Kim, Tae Su Chung, Byoung-Sun Moon, Hoseung Lee, Isaac S. Kohane:
Evolution strategy applied to global optimization of clusters in gene expression data of DNA microarrays. CEC 2001: 845-850 - [c31]Stephen C. Porter, Isaac S. Kohane:
Optimal Data Entry by Patients: Effects of Interface Structure and Design. MedInfo 2001: 141-145 - [c30]Francisco M. de la Vega, Martin Kreitman, Isaac S. Kohane:
Human Genome Variation: Linking Genotypes to Clinical Phenotypes - Session Introduction. Pacific Symposium on Biocomputing 2001: 3-5 - [c29]Atul J. Butte, J. Ye, G. Niederfellner, K. Rett, H. U. Häring, M. F. White, Isaac S. Kohane:
Determining Significant Fold Differences in Gene Expression Analysis. Pacific Symposium on Biocomputing 2001: 6-17 - [c28]Ju-Han Kim, Lucila Ohno-Machado, Isaac S. Kohane:
Unsupervised Learning from Complex Data: The Matrix Incision Tree Algorithm. Pacific Symposium on Biocomputing 2001: 30-41 - [c27]Christine L. Tsien, T. A. Libermann, X. Gu, Isaac S. Kohane:
On Reporting Fold Differences. Pacific Symposium on Biocomputing 2001: 496-507 - 2000
- [j9]Christine L. Tsien, Isaac S. Kohane, Neil McIntosh:
Multiple signal integration by decision tree induction to detect artifacts in the neonatal intensive care unit. Artif. Intell. Medicine 19(3): 189-202 (2000) - [j8]Joseph Gonzalez-Heydrich, David Ray DeMaso, Connie Irwin, Ronald J. Steingard, Isaac S. Kohane, William R. Beardslee:
Implementation of an electronic medical record system in a pediatric psychopharmacology program. Int. J. Medical Informatics 57(2-3): 109-116 (2000) - [j7]Daniel J. Nigrin, Isaac S. Kohane:
Application of Information Technology: Temporal Expressiveness in Querying a Time-stamp - based Clinical Database. J. Am. Medical Informatics Assoc. 7(2): 152-163 (2000) - [j6]Isaac S. Kohane:
Bioinformatics and Clinical Informatics: The Imperative to Collaborate. J. Am. Medical Informatics Assoc. 7(5): 512-516 (2000) - [c26]Atul J. Butte, David A. Weinstein, Isaac S. Kohane:
Enrolling patients into clinical trials faster using RealTime Recuiting. AMIA 2000 - [c25]Isaac S. Kohane, Russ B. Altman:
The new peer review. AMIA 2000 - [c24]Kenneth D. Mandl, Alberto Riva, Isaac S. Kohane:
A Distributed, Secure File System For Personal Medical Records. AMIA 2000 - [c23]Daniel J. Nigrin, Isaac S. Kohane:
Glucoweb: a case study of secure, remote biomonitoring and communication. AMIA 2000 - [c22]Do Hoon Oh, Alberto Riva, Kenneth D. Mandl, Isaac S. Kohane:
Collating of a Distributed XML-based Medical Records into a Relational Database. AMIA 2000 - [c21]Lucila Ohno-Machado, Aziz A. Boxwala, Hamish Fraser, Robert A. Greenes, Isaac S. Kohane, Heimar F. Marin, Eduardo P. Marques, Eduardo Massad, Beatriz H. Rocha, Roberto A. Rocha, Laura M. Smeaton, Peter Szolovits:
First Steps Towards Implementing an International Training Program in Medical Informatics: The Brazil/USA Project. AMIA 2000 - [c20]Stephen C. Porter, Gary R. Fleisher, Isaac S. Kohane, Kenneth D. Mandl:
Development of a Parent-completed Electronic Interview to Assess Dehydration. AMIA 2000
1990 – 1999
- 1999
- [c19]Atul J. Butte, Isaac S. Kohane:
Unsupervised knowledge discovery in medical databases using relevance networks. AMIA 1999 - [c18]Cungen Cao, Isaac S. Kohane, Neil McIntosh:
Artifact detection in cardiovascular time series monitoring data from preterm infants. AMIA 1999 - [c17]Kenneth D. Mandl, Isaac S. Kohane:
Healthconnect: clinical grade patient-physician communication. AMIA 1999 - [c16]Daniel J. Nigrin, Isaac S. Kohane:
Scaling a data retrieval and mining application to the enterprise-wide level. AMIA 1999 - 1998
- [c15]Dilek A. Bishku, Charles J. Homer, Kenneth D. Mandl, Isaac S. Kohane:
ParentLink: A Web-Based Communications Tool for Parents and Pediatricians. AMIA 1998 - [c14]Karen L. Bradshaw, Kenneth D. Mandl, Isaac S. Kohane:
HealthConnect: A Structured Communication System for Health Management. AMIA 1998 - [c13]Hongmei Dong, David S. Greenes, Gary R. Fleisher, Isaac S. Kohane:
An Alert System for ED Laboratory Test Results. AMIA 1998 - [c12]Isaac S. Kohane, Hongmei Dong, Peter Szolovits:
Health information identification and de-identification toolkit. AMIA 1998 - [c11]Kenneth D. Mandl, S. B. Katz, Isaac S. Kohane:
Social equity and access to the World Wide Web and E-mail: implications for design and implementation of medical applications. AMIA 1998 - [c10]Daniel J. Nigrin, Isaac S. Kohane:
Data mining by clinicians. AMIA 1998 - [c9]Stephen C. Porter, Mary Silvia, Gary R. Fleisher, Isaac S. Kohane, Kenneth D. Mandl:
Parental Input into the Emergency Department Medical Record. AMIA 1998 - [c8]Christine L. Tsien, Daniel J. Nigrin, Isaac S. Kohane:
Methodology for Computer-Assisted Prediction of Growth Hormone Deficiency in Children. AMIA 1998 - [c7]F. J. van Wingerde, Yao Sun, Oren Harary, Kenneth D. Mandl, Susanne Salem-Schatz, Charles J. Homer, Isaac S. Kohane:
Linking multiple heterogeneous data sources to practice guidelines. AMIA 1998 - [c6]Christine L. Tsien, Hamish S. F. Fraser, Isaac S. Kohane:
LRTree: A Hybrid technique for Classifying Myocardial Infarction Data Containing Unknown Attribute Values. PAKDD 1998: 409-411 - 1997
- [c5]David M. Rind, Isaac S. Kohane, Peter Szolovits, Charles Safran, Henry C. Chueh, G. Octo Barnett:
Confidentiality of Medical Records in the W3-EMRS Project. AMIA 1997 - [c4]Kang Wang, F. J. van Wingerde, Karen L. Bradshaw, Peter Szolovits, Isaac S. Kohane:
A Java-based multi-institutional medical information retrieval system. AMIA 1997 - 1996
- [j5]Ira J. Haimowitz, Isaac S. Kohane:
Managing temporal worlds for medical trend diagnosis. Artif. Intell. Medicine 8(3): 299-321 (1996) - [j4]Isaac S. Kohane, Philip Greenspun, James C. Fackler, Christopher Cimino, Peter Szolovits:
Application of Technology: Building National Electronic Medical Record Systems via the World Wide Web. J. Am. Medical Informatics Assoc. 3(3): 191-207 (1996) - 1995
- [j3]Isaac S. Kohane:
Editorial. Artif. Intell. Medicine 7(6): 471-472 (1995) - [j2]Ira J. Haimowitz, P. P. Le, Isaac S. Kohane:
Clinical monitoring using regression-based trend templates. Artif. Intell. Medicine 7(6): 473-496 (1995) - 1994
- [j1]Peter Szolovits, Isaac S. Kohane:
Policy Forum: Against Simple Universal Health-Care Identifiers. J. Am. Medical Informatics Assoc. 1(4): 316-319 (1994) - 1993
- [c3]Ira J. Haimowitz, Isaac S. Kohane:
An Epistemology for Clinically Significant Trends. AAAI 1993: 176-181 - [c2]James C. Fackler, Isaac S. Kohane:
Integration of intermittent clinical data with continuous data from bedside monitors. CBMS 1993: 289-294 - [c1]Ira J. Haimowitz, Isaac S. Kohane:
Automated Trend Detection with Alternate Temporal Hypotheses. IJCAI 1993: 146-151
Coauthor Index
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